Rmu_co8185036.1_g000001

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8185036.1
OG0023067
Physical Location & Seq
Forward (+)
1 .. 691
691 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8185036.1_g000001.1.cds

Sequence Viewer

Length: 691 bp
tgtattactcgagtagggagttaaaacttgagaacccgaatttaggcactttaatccagaaccttacagagcttactgagttaaatcttggtggtctaaacctatcagctgagggatctcactggggccaaaccatatcatcttcacttccaaagctgagtctgttgaccttgtccggttgtcatctttcaggccctattcatgaatcattggtcaggcttcattctctatccatgttagtattggatgacaactacatctctggtccggttccaaaattctttgccaatttttcaagtttgatttccttgagtctctctgcctgtaacttgtacgaagcatttcccaaagagatattcctggtacctacactacagtctgttgacctatcagctaattcagagcttcgtggttccttgccggagtttccaaagaatggatctctccaatccctagttctatccgggactaagttctcaggagtcttgccggattctattggcaaccttaaaatgctgtctgaattacatcttaaagattgcaatttcacaggagcagttccaaagtcactggcaaacctaacacaattgggatatttggacttgtcatacaacaagttttctagtccgattaattctattcaatgggacaaactcatcaagcttgtggatctcgacttgtccgacaatct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

230

Amino Acids

25.06

Weight (kDa)

5.31

Isoelectric Point (pI)

35.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8185036.1_g000001 Rmu_sc0001431.1_g000001
rosa_samantha Rh1DG014000 Rh1DG014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 363
AccB1I GGYRCC 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 436
AclWI GGATC 3 cut(s) 123, 447, 677
AcsI RAATTY 2 cut(s) 39, 277
AfaI GTAC 2 cut(s) 334, 365
AfiI CCNNNNNNNGG 2 cut(s) 43, 436
AgsI TTSAA 2 cut(s) 296, 643
AjnI CCWGG 1 cut(s) 359
AjuI GAANNNNNNNTTGG 4 cut(s) 340, 372, 440, 472
AluBI AGCT 6 cut(s) 72, 109, 156, 394, 405, 663
AluI AGCT 6 cut(s) 72, 109, 156, 394, 405, 663
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 3 cut(s) 123, 447, 677
Ama87I CYCGRG 1 cut(s) 9
AoxI GGCC 2 cut(s) 126, 192
ApoI RAATTY 2 cut(s) 39, 277
AseI ATTAAT 1 cut(s) 632
Asp700I GAANNNNTTC 1 cut(s) 341
Asp718I GGTACC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 126, 193, 265
AsuC2I CCSGG 1 cut(s) 465
AvaI CYCGRG 1 cut(s) 9
AvaII GGWCC 1 cut(s) 265
BanI GGYRCC 1 cut(s) 363
BbvCI CCTCAGC 1 cut(s) 110
BciT130I CCWGG 1 cut(s) 361
BcnI CCSGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 319
BfaI CTAG 2 cut(s) 454, 623
BfmI CTRYAG 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 361, 465
Bme18I GGWCC 1 cut(s) 265
BmeT110I CYCGRG 1 cut(s) 9
BmgT120I GGNCC 3 cut(s) 126, 193, 265
BmiI GGNNCC 4 cut(s) 127, 272, 365, 414
BmrFI CCNGG 2 cut(s) 361, 465
BmrI ACTGGG 1 cut(s) 132
BmuI ACTGGG 1 cut(s) 132
Bpu10I CCTNAGC 1 cut(s) 110
BpuEI CTTGAG 2 cut(s) 49, 330
BpuMI CCSGG 1 cut(s) 465
BsaWI WCCGGW 2 cut(s) 175, 267
Bsc4I CCNNNNNNNGG 2 cut(s) 43, 436
Bse1I ACTGG 2 cut(s) 127, 575
BseBI CCWGG 1 cut(s) 361
BseGI GGATG 1 cut(s) 252
BseLI CCNNNNNNNGG 2 cut(s) 43, 436
BseMII CTCAG 4 cut(s) 68, 101, 148, 491
BseNI ACTGG 2 cut(s) 127, 575
BshFI GGCC 2 cut(s) 128, 194
BshNI GGYRCC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 9
BsiSI CCGG 5 cut(s) 176, 268, 421, 464, 490
BslFI GGGAC 2 cut(s) 480, 661
BslI CCNNNNNNNGG 2 cut(s) 43, 436
BsmAI GTCTC 1 cut(s) 319
BsmFI GGGAC 2 cut(s) 480, 661
BsnI GGCC 2 cut(s) 128, 194
BsoBI CYCGRG 1 cut(s) 9
Bsp143I GATC 3 cut(s) 115, 439, 669
BspANI GGCC 2 cut(s) 128, 194
BspCNI CTCAG 4 cut(s) 69, 102, 149, 490
BspHI TCATGA 1 cut(s) 201
BspLI GGNNCC 4 cut(s) 127, 272, 365, 414
BspPI GGATC 3 cut(s) 123, 447, 677
BspT107I GGYRCC 1 cut(s) 363
BsrI ACTGG 2 cut(s) 127, 575
BssMI GATC 3 cut(s) 115, 439, 669
Bst2UI CCWGG 1 cut(s) 361
Bst4CI ACNGT 1 cut(s) 377
BstDEI CTNAG 5 cut(s) 77, 110, 157, 470, 477
BstF5I GGATG 1 cut(s) 252
BstKTI GATC 3 cut(s) 118, 442, 672
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 3 cut(s) 115, 439, 669
BstNI CCWGG 1 cut(s) 361
BstSCI CCNGG 2 cut(s) 359, 463
BstSFI CTRYAG 1 cut(s) 373
BstX2I RGATCY 3 cut(s) 115, 439, 669
BstYI RGATCY 3 cut(s) 115, 439, 669
BsuRI GGCC 2 cut(s) 128, 194
BtsCI GGATG 1 cut(s) 252
BtsIMutI CAGTG 2 cut(s) 120, 568
CciI TCATGA 1 cut(s) 201
Cfr13I GGNCC 3 cut(s) 126, 193, 265
Csp6I GTAC 2 cut(s) 333, 364
CviAII CATG 2 cut(s) 202, 234
CviJI RGCY 9 cut(s) 72, 109, 128, 156, 194, 219, 394, 405, 663
CviKI_1 RGCY 9 cut(s) 72, 109, 128, 156, 194, 219, 394, 405, 663
CviQI GTAC 2 cut(s) 333, 364
DdeI CTNAG 5 cut(s) 77, 110, 157, 470, 477
DpnI GATC 3 cut(s) 117, 441, 671
DpnII GATC 3 cut(s) 115, 439, 669
Eco47I GGWCC 1 cut(s) 265
Eco88I CYCGRG 1 cut(s) 9
EcoO109I RGGNCCY 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 359
FaeI CATG 2 cut(s) 205, 237
FaiI YATR 4 cut(s) 136, 203, 235, 609
FaqI GGGAC 2 cut(s) 480, 661
FatI CATG 2 cut(s) 201, 233
FokI GGATG 1 cut(s) 259
FspBI CTAG 2 cut(s) 454, 623
HaeIII GGCC 2 cut(s) 128, 194
HapII CCGG 5 cut(s) 176, 268, 421, 464, 490
Hin1II CATG 2 cut(s) 205, 237
HincII GTYRAC 2 cut(s) 167, 384
HindII GTYRAC 2 cut(s) 167, 384
HindIII AAGCTT 1 cut(s) 661
HinfI GANTC 5 cut(s) 159, 205, 312, 482, 493
HpaII CCGG 5 cut(s) 176, 268, 421, 464, 490
Hpy166II GTNNAC 2 cut(s) 167, 384
Hpy188I TCNGA 4 cut(s) 402, 522, 629, 684
Hpy188III TCNNGA 4 cut(s) 57, 202, 479, 673
Hpy8I GTNNAC 2 cut(s) 167, 384
HpyCH4III ACNGT 1 cut(s) 377
HpyCH4V TGCA 1 cut(s) 542
HpyF3I CTNAG 5 cut(s) 77, 110, 157, 470, 477
Hsp92II CATG 2 cut(s) 205, 237
KpnI GGTACC 1 cut(s) 367
Kzo9I GATC 3 cut(s) 115, 439, 669
LmnI GCTCC 1 cut(s) 553
MaeI CTAG 2 cut(s) 454, 623
MaeIII GTNAC 2 cut(s) 325, 566
MalI GATC 3 cut(s) 117, 441, 671
MboI GATC 3 cut(s) 115, 439, 669
MboII GAAGA 1 cut(s) 134
MfeI CAATTG 1 cut(s) 586
MflI RGATCY 3 cut(s) 115, 439, 669
MluCI AATT 8 cut(s) 39, 277, 288, 396, 523, 543, 586, 633
MlyI GAGTC 3 cut(s) 168, 321, 491
MnlI CCTC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 341
MseI TTAA 6 cut(s) 22, 52, 82, 509, 533, 632
MspA1I CMGCKG 1 cut(s) 109
MspI CCGG 5 cut(s) 176, 268, 421, 464, 490
MspR9I CCNGG 2 cut(s) 361, 465
MunI CAATTG 1 cut(s) 586
MvaI CCWGG 1 cut(s) 361
NciI CCSGG 1 cut(s) 465
NdeII GATC 3 cut(s) 115, 439, 669
NlaIII CATG 2 cut(s) 205, 237
NlaIV GGNNCC 4 cut(s) 127, 272, 365, 414
NmuCI GTSAC 1 cut(s) 566
PaeR7I CTCGAG 1 cut(s) 9
PagI TCATGA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 1 cut(s) 680
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 2 cut(s) 205, 493
PflFI GACNNNGTC 1 cut(s) 171
PflMI CCANNNNNTGG 1 cut(s) 436
PfoI TCCNGGA 1 cut(s) 463
PleI GAGTC 3 cut(s) 167, 320, 490
PpsI GAGTC 3 cut(s) 167, 320, 490
PshBI ATTAAT 1 cut(s) 632
Psp6I CCWGG 1 cut(s) 359
PspGI CCWGG 1 cut(s) 359
PspN4I GGNNCC 4 cut(s) 127, 272, 365, 414
PspPI GGNCC 3 cut(s) 126, 193, 265
PspXI VCTCGAGB 1 cut(s) 9
PsuI RGATCY 3 cut(s) 115, 439, 669
PsyI GACNNNGTC 1 cut(s) 171
PvuII CAGCTG 1 cut(s) 109
RsaI GTAC 2 cut(s) 334, 365
RsaNI GTAC 2 cut(s) 333, 364
SaqAI TTAA 6 cut(s) 22, 52, 82, 509, 533, 632
Sau3AI GATC 3 cut(s) 115, 439, 669
Sau96I GGNCC 3 cut(s) 126, 193, 265
SchI GAGTC 3 cut(s) 168, 321, 491
ScrFI CCNGG 2 cut(s) 361, 465
SfcI CTRYAG 1 cut(s) 373
Sfr274I CTCGAG 1 cut(s) 9
SinI GGWCC 1 cut(s) 265
SlaI CTCGAG 1 cut(s) 9
SmlI CTYRAG 3 cut(s) 9, 28, 309
SmoI CTYRAG 3 cut(s) 9, 28, 309
Sse9I AATT 8 cut(s) 39, 277, 288, 396, 523, 543, 586, 633
SspMI CTAG 2 cut(s) 454, 623
StyD4I CCNGG 2 cut(s) 359, 463
TaaI ACNGT 1 cut(s) 377
TaqI TCGA 2 cut(s) 10, 674
TasI AATT 8 cut(s) 39, 277, 288, 396, 523, 543, 586, 633
TfiI GAWTC 2 cut(s) 205, 493
Tru1I TTAA 6 cut(s) 22, 52, 82, 509, 533, 632
Tru9I TTAA 6 cut(s) 22, 52, 82, 509, 533, 632
TscAI CASTG 2 cut(s) 127, 575
TseFI GTSAC 1 cut(s) 566
Tsp45I GTSAC 1 cut(s) 566
TspDTI ATGAA 3 cut(s) 190, 211, 218
TspRI CASTG 2 cut(s) 127, 575
Tth111I GACNNNGTC 1 cut(s) 171
Van91I CCANNNNNTGG 1 cut(s) 436
VpaK11BI GGWCC 1 cut(s) 265
VspI ATTAAT 1 cut(s) 632
XapI RAATTY 2 cut(s) 39, 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 240
XhoI CTCGAG 1 cut(s) 9
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 2 cut(s) 454, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.