Rh1DG014300

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0023067
Physical Location & Seq
Forward (+)
2328658 .. 2329577
920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG014300.1

Sequence Viewer

Length: 750 bp
ATGCTAATTCAGAACCTCACAGAGCTTACAGAATTATATCTTGATCATATAAACCTGTCGGCTGAGGGATCTCACTGGAGCCAAACCATATCATCTTCACTTCCAAAGCTGAGTGTGTTGACCTTGTCCTATTGTGATCTTTCAGGCCCTATTCATGAATCATTTGCCAAGCTTGATTCTCTATCCATGTTAAGATTGTATGGAAACAATATCTCTGGTCCGGTTCCAAAATTCTTTGCCAATTTTTCAAGCTTGATTTCCTTAAGTCTCTCCGCTTGTAACTTGTATGGAGCATTTCCCAGAGAGATATTCCAGGTACCTACACTACGGTTTGTTGACCTATCAGCTAATTCAGAGCTTCGTGGTTCCTTACCGGAATTTCTAAAGAATGGATCTCTCGAATCCTTAGTTCTATCCGGGACTAAGTTTTCAGGAGTCTTGCCGGACTCTATTGGCAACCTTGAAATGCTGTCTGGATTATATCTTTCAGATTGCAATTTCACAGGGGCAGTTCCAAAGTCACTGGCAAACCTAACACAATTGAGGTTTTTGGCCTTGTCATCCAACAAGTTTTCTGGTTCGATTAATTATATTCAATGGGACAAACTCATCAAGCTTGAGCTTCTCGACTTGTCCAACAATCTTCTTTACAGGAGTATTCCATTGTCTCCCTTTTCTATTCCCTGGCTGCGGAGGTTAGATCTTTCTGGAAATCACTTCTCTGGAGTCGAGAAATCTTTCACTTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

249

Amino Acids

27.47

Weight (kDa)

6.08

Isoelectric Point (pI)

34.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 103 - 191 1.3e-06 Leucine-rich repeat region
LRR_8 PF13855 132 - 191 7.2e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0023067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8185036.1_g000001 Rmu_sc0001431.1_g000001
rosa_samantha Rh1DG014000 Rh1DG014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 316
AccB1I GGYRCC 1 cut(s) 316
AciI CCGC 2 cut(s) 273, 691
AclWI GGATC 2 cut(s) 76, 400
AcsI RAATTY 2 cut(s) 230, 377
AfaI GTAC 1 cut(s) 318
AfiI CCNNNNNNNGG 1 cut(s) 690
AflII CTTAAG 1 cut(s) 262
AgsI TTSAA 3 cut(s) 249, 464, 596
AjnI CCWGG 2 cut(s) 312, 683
AluBI AGCT 8 cut(s) 25, 109, 172, 252, 347, 358, 616, 622
AluI AGCT 8 cut(s) 25, 109, 172, 252, 347, 358, 616, 622
Alw26I GTCTC 2 cut(s) 272, 672
AlwI GGATC 2 cut(s) 76, 400
AoxI GGCC 2 cut(s) 145, 552
ApeKI GCWGC 1 cut(s) 688
ApoI RAATTY 2 cut(s) 230, 377
AseI ATTAAT 1 cut(s) 585
Asp700I GAANNNNTTC 1 cut(s) 737
Asp718I GGTACC 1 cut(s) 316
AspS9I GGNCC 2 cut(s) 146, 218
AsuC2I CCSGG 1 cut(s) 418
AvaII GGWCC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 316
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 675
BciT130I CCWGG 2 cut(s) 314, 685
BclI TGATCA 1 cut(s) 43
BcnI CCSGG 1 cut(s) 418
BcoDI GTCTC 2 cut(s) 272, 672
BfrI CTTAAG 1 cut(s) 262
BglII AGATCT 1 cut(s) 700
BisI GCNGC 1 cut(s) 689
BlsI GCNGC 1 cut(s) 690
Bme1390I CCNGG 3 cut(s) 314, 418, 685
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 2 cut(s) 146, 218
BmiI GGNNCC 4 cut(s) 80, 225, 318, 367
BmrFI CCNGG 3 cut(s) 314, 418, 685
BpmI CTGGAG 2 cut(s) 97, 744
Bpu10I CCTNAGC 1 cut(s) 63
BpuEI CTTGAG 1 cut(s) 638
BpuMI CCSGG 1 cut(s) 418
BsaJI CCNNGG 1 cut(s) 683
BsaWI WCCGGW 2 cut(s) 220, 373
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse1I ACTGG 2 cut(s) 80, 528
BseBI CCWGG 2 cut(s) 314, 685
BseDI CCNNGG 1 cut(s) 683
BseGI GGATG 1 cut(s) 560
BseLI CCNNNNNNNGG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 54, 101
BseNI ACTGG 2 cut(s) 80, 528
BseXI GCAGC 1 cut(s) 675
BshFI GGCC 2 cut(s) 147, 554
BshNI GGYRCC 1 cut(s) 316
BsiSI CCGG 4 cut(s) 221, 374, 417, 443
BslFI GGGAC 2 cut(s) 433, 614
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 2 cut(s) 272, 672
BsmFI GGGAC 2 cut(s) 433, 614
BsnI GGCC 2 cut(s) 147, 554
Bsp143I GATC 5 cut(s) 43, 68, 136, 392, 700
BspACI CCGC 2 cut(s) 273, 691
BspANI GGCC 2 cut(s) 147, 554
BspCNI CTCAG 2 cut(s) 55, 102
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 4 cut(s) 80, 225, 318, 367
BspPI GGATC 2 cut(s) 76, 400
BspT107I GGYRCC 1 cut(s) 316
BspTI CTTAAG 1 cut(s) 262
BsrI ACTGG 2 cut(s) 80, 528
BssECI CCNNGG 1 cut(s) 683
BssMI GATC 5 cut(s) 43, 68, 136, 392, 700
Bst2UI CCWGG 2 cut(s) 314, 685
Bst4CI ACNGT 1 cut(s) 330
BstAFI CTTAAG 1 cut(s) 262
BstDEI CTNAG 4 cut(s) 63, 110, 406, 423
BstF5I GGATG 1 cut(s) 560
BstKTI GATC 5 cut(s) 46, 71, 139, 395, 703
BstMAI GTCTC 2 cut(s) 272, 672
BstMBI GATC 5 cut(s) 43, 68, 136, 392, 700
BstNI CCWGG 2 cut(s) 314, 685
BstSCI CCNGG 3 cut(s) 312, 416, 683
BstV1I GCAGC 1 cut(s) 675
BstX2I RGATCY 3 cut(s) 68, 392, 700
BstYI RGATCY 3 cut(s) 68, 392, 700
BsuRI GGCC 2 cut(s) 147, 554
BtsCI GGATG 1 cut(s) 560
BtsIMutI CAGTG 2 cut(s) 73, 521
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 146, 218
Csp6I GTAC 1 cut(s) 317
CviAII CATG 2 cut(s) 155, 187
CviQI GTAC 1 cut(s) 317
DdeI CTNAG 4 cut(s) 63, 110, 406, 423
DpnI GATC 5 cut(s) 45, 70, 138, 394, 702
DpnII GATC 5 cut(s) 43, 68, 136, 392, 700
Eco47I GGWCC 1 cut(s) 218
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 312, 683
FaeI CATG 2 cut(s) 158, 190
FaqI GGGAC 2 cut(s) 433, 614
FatI CATG 2 cut(s) 154, 186
FbaI TGATCA 1 cut(s) 43
Fnu4HI GCNGC 1 cut(s) 689
FokI GGATG 1 cut(s) 547
Fsp4HI GCNGC 1 cut(s) 689
GluI GCNGC 1 cut(s) 689
GsuI CTGGAG 2 cut(s) 97, 744
HaeIII GGCC 2 cut(s) 147, 554
HapII CCGG 4 cut(s) 221, 374, 417, 443
Hin1II CATG 2 cut(s) 158, 190
HincII GTYRAC 2 cut(s) 120, 337
HindII GTYRAC 2 cut(s) 120, 337
HindIII AAGCTT 3 cut(s) 170, 250, 614
HinfI GANTC 6 cut(s) 158, 176, 401, 435, 446, 726
HpaII CCGG 4 cut(s) 221, 374, 417, 443
Hpy166II GTNNAC 2 cut(s) 120, 337
Hpy188I TCNGA 3 cut(s) 12, 355, 490
Hpy8I GTNNAC 2 cut(s) 120, 337
HpyCH4III ACNGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 495
HpyF3I CTNAG 4 cut(s) 63, 110, 406, 423
Hsp92II CATG 2 cut(s) 158, 190
KpnI GGTACC 1 cut(s) 320
Ksp22I TGATCA 1 cut(s) 43
Kzo9I GATC 5 cut(s) 43, 68, 136, 392, 700
LmnI GCTCC 2 cut(s) 78, 290
Lsp1109I GCAGC 1 cut(s) 675
MaeIII GTNAC 2 cut(s) 278, 519
MalI GATC 5 cut(s) 45, 70, 138, 394, 702
MboI GATC 5 cut(s) 43, 68, 136, 392, 700
MboII GAAGA 2 cut(s) 87, 635
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 3 cut(s) 68, 392, 700
MluCI AATT 9 cut(s) 6, 32, 230, 241, 349, 377, 496, 539, 586
MlyI GAGTC 3 cut(s) 440, 444, 735
MmeI TCCRAC 2 cut(s) 588, 660
MnlI CCTC 4 cut(s) 26, 58, 537, 687
MroXI GAANNNNTTC 1 cut(s) 737
MseI TTAA 3 cut(s) 191, 263, 585
MspCI CTTAAG 1 cut(s) 262
MspI CCGG 4 cut(s) 221, 374, 417, 443
MspR9I CCNGG 3 cut(s) 314, 418, 685
MunI CAATTG 1 cut(s) 539
MvaI CCWGG 2 cut(s) 314, 685
NciI CCSGG 1 cut(s) 418
NdeII GATC 5 cut(s) 43, 68, 136, 392, 700
NlaIII CATG 2 cut(s) 158, 190
NlaIV GGNNCC 4 cut(s) 80, 225, 318, 367
NmuCI GTSAC 1 cut(s) 519
PagI TCATGA 1 cut(s) 154
PdmI GAANNNNTTC 1 cut(s) 737
PfeI GAWTC 3 cut(s) 158, 176, 401
PflFI GACNNNGTC 1 cut(s) 124
PfoI TCCNGGA 1 cut(s) 416
PkrI GCNGC 1 cut(s) 690
PleI GAGTC 3 cut(s) 440, 443, 734
PpsI GAGTC 3 cut(s) 440, 443, 734
PshBI ATTAAT 1 cut(s) 585
Psp6I CCWGG 2 cut(s) 312, 683
PspGI CCWGG 2 cut(s) 312, 683
PspN4I GGNNCC 4 cut(s) 80, 225, 318, 367
PspPI GGNCC 2 cut(s) 146, 218
PsuI RGATCY 3 cut(s) 68, 392, 700
PsyI GACNNNGTC 1 cut(s) 124
RsaI GTAC 1 cut(s) 318
RsaNI GTAC 1 cut(s) 317
SaqAI TTAA 3 cut(s) 191, 263, 585
SatI GCNGC 1 cut(s) 689
Sau3AI GATC 5 cut(s) 43, 68, 136, 392, 700
Sau96I GGNCC 2 cut(s) 146, 218
SchI GAGTC 3 cut(s) 440, 444, 735
ScrFI CCNGG 3 cut(s) 314, 418, 685
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 262, 617
SmoI CTYRAG 2 cut(s) 262, 617
Sse9I AATT 9 cut(s) 6, 32, 230, 241, 349, 377, 496, 539, 586
SsiI CCGC 2 cut(s) 273, 691
StyD4I CCNGG 3 cut(s) 312, 416, 683
TaaI ACNGT 1 cut(s) 330
TaqI TCGA 4 cut(s) 399, 581, 627, 729
TasI AATT 9 cut(s) 6, 32, 230, 241, 349, 377, 496, 539, 586
TfiI GAWTC 3 cut(s) 158, 176, 401
Tru1I TTAA 3 cut(s) 191, 263, 585
Tru9I TTAA 3 cut(s) 191, 263, 585
TscAI CASTG 2 cut(s) 80, 528
TseFI GTSAC 1 cut(s) 519
TseI GCWGC 1 cut(s) 688
Tsp45I GTSAC 1 cut(s) 519
TspDTI ATGAA 2 cut(s) 143, 171
TspRI CASTG 2 cut(s) 80, 528
Tth111I GACNNNGTC 1 cut(s) 124
Vha464I CTTAAG 1 cut(s) 262
VpaK11BI GGWCC 1 cut(s) 218
VspI ATTAAT 1 cut(s) 585
XapI RAATTY 2 cut(s) 230, 377
XmnI GAANNNNTTC 1 cut(s) 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.