Rmu_sc0001431.1_g000001

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001431.1
OG0023067
Physical Location & Seq
Forward (+)
102 .. 806
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001431.1_g000001.1.cds

Sequence Viewer

Length: 705 bp
atgaatgcattagactatatcatcacagagcttactgacctaaatcttaatggtctaaacctatcagctgagggatctctatggagccaaaccatatcatcttcacttccaaagctgagtgcgttgaccttgtctgattgtgagctttcaggccctattcatgaatcatttgccaggcttcattctctatccatgttaatattggataacaacaacatctctgctccagttcctaaaatttttgccaatttttcaagcttgatttccctagatctctcacattgtaacatccatggagcatttcccaaagagatattccaggtacctacactacagtctgttgtcctatcatataattcagagtttcgtggttccttaccggagtttccaaagaatggatctctcgaattcctagtccttagcaggactaaattttcaggagtcttgtcggactctattggcaaccttaaattgctgtctagattagatctttcatattgcaatttcacaggagtggttccaaagtcactggcaaacctaacacaattggaggatttggccttgtcatccaacaagttttctagtccgataaattctattcaatgggacaaactcatcaagcttgacagtctccacttggccaacaatctgctctatgggagtattccattgtctcccttttctattccttgctatagagcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

234

Amino Acids

25.61

Weight (kDa)

5.68

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023067)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8185036.1_g000001 Rmu_sc0001431.1_g000001
rosa_samantha Rh1DG014000 Rh1DG014300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 322
AccB1I GGYRCC 1 cut(s) 322
AccB7I CCANNNNNTGG 1 cut(s) 395
AclWI GGATC 2 cut(s) 82, 406
AcoI YGGCCR 1 cut(s) 639
AcsI RAATTY 4 cut(s) 237, 407, 431, 592
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 1 cut(s) 395
AgsI TTSAA 2 cut(s) 255, 602
AjnI CCWGG 2 cut(s) 173, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 7 cut(s) 31, 68, 115, 145, 258, 622, 701
AluI AGCT 7 cut(s) 31, 68, 115, 145, 258, 622, 701
Alw26I GTCTC 2 cut(s) 635, 678
AlwI GGATC 2 cut(s) 82, 406
AoxI GGCC 3 cut(s) 151, 558, 639
ApoI RAATTY 4 cut(s) 237, 407, 431, 592
ArsI GACNNNNNNTTYG 2 cut(s) 399, 431
Asp718I GGTACC 1 cut(s) 322
AspS9I GGNCC 1 cut(s) 152
BalI TGGCCA 1 cut(s) 641
BanI GGYRCC 1 cut(s) 322
BbvCI CCTCAGC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 175, 320
BcoDI GTCTC 2 cut(s) 635, 678
BfaI CTAG 4 cut(s) 269, 413, 480, 582
BfmI CTRYAG 2 cut(s) 332, 694
BglII AGATCT 2 cut(s) 271, 487
Bme1390I CCNGG 2 cut(s) 175, 320
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 4 cut(s) 86, 324, 373, 519
BmrFI CCNGG 2 cut(s) 175, 320
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 69, 419
BsaJI CCNNGG 1 cut(s) 292
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 395
Bse1I ACTGG 2 cut(s) 227, 534
BseBI CCWGG 2 cut(s) 175, 320
BseDI CCNNGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 288, 566
BseLI CCNNNNNNNGG 1 cut(s) 395
BseMII CTCAG 2 cut(s) 60, 107
BseNI ACTGG 2 cut(s) 227, 534
BshFI GGCC 3 cut(s) 153, 560, 641
BshNI GGYRCC 1 cut(s) 322
BsiSI CCGG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 620
BslI CCNNNNNNNGG 1 cut(s) 395
BsmAI GTCTC 2 cut(s) 635, 678
BsmFI GGGAC 1 cut(s) 620
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 3 cut(s) 153, 560, 641
Bsp143I GATC 4 cut(s) 74, 271, 398, 487
Bsp19I CCATGG 1 cut(s) 292
BspANI GGCC 3 cut(s) 153, 560, 641
BspCNI CTCAG 2 cut(s) 61, 108
BspHI TCATGA 1 cut(s) 160
BspLI GGNNCC 4 cut(s) 86, 324, 373, 519
BspPI GGATC 2 cut(s) 82, 406
BspT107I GGYRCC 1 cut(s) 322
BsrI ACTGG 2 cut(s) 227, 534
BssECI CCNNGG 1 cut(s) 292
BssMI GATC 4 cut(s) 74, 271, 398, 487
BssT1I CCWWGG 1 cut(s) 292
Bst2UI CCWGG 2 cut(s) 175, 320
Bst4CI ACNGT 2 cut(s) 336, 629
BstDEI CTNAG 3 cut(s) 69, 116, 419
BstDSI CCRYGG 1 cut(s) 292
BstF5I GGATG 2 cut(s) 288, 566
BstKTI GATC 4 cut(s) 77, 274, 401, 490
BstMAI GTCTC 2 cut(s) 635, 678
BstMBI GATC 4 cut(s) 74, 271, 398, 487
BstNI CCWGG 2 cut(s) 175, 320
BstSCI CCNGG 2 cut(s) 173, 318
BstSFI CTRYAG 2 cut(s) 332, 694
BstX2I RGATCY 4 cut(s) 74, 271, 398, 487
BstYI RGATCY 4 cut(s) 74, 271, 398, 487
BsuRI GGCC 3 cut(s) 153, 560, 641
BtgI CCRYGG 1 cut(s) 292
BtsCI GGATG 2 cut(s) 288, 566
BtsIMutI CAGTG 1 cut(s) 527
CciI TCATGA 1 cut(s) 160
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 323
CviAII CATG 3 cut(s) 161, 193, 293
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 3 cut(s) 69, 116, 419
DpnI GATC 4 cut(s) 76, 273, 400, 489
DpnII GATC 4 cut(s) 74, 271, 398, 487
EaeI YGGCCR 1 cut(s) 639
Eco130I CCWWGG 1 cut(s) 292
EcoO109I RGGNCCY 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 173, 318
EcoT14I CCWWGG 1 cut(s) 292
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 292
FaeI CATG 3 cut(s) 164, 196, 296
FaqI GGGAC 1 cut(s) 620
FatI CATG 3 cut(s) 160, 192, 292
FokI GGATG 2 cut(s) 275, 553
FspBI CTAG 4 cut(s) 269, 413, 480, 582
GsuI CTGGAG 1 cut(s) 210
HaeIII GGCC 3 cut(s) 153, 560, 641
HapII CCGG 1 cut(s) 380
Hin1II CATG 3 cut(s) 164, 196, 296
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HindIII AAGCTT 2 cut(s) 256, 620
HinfI GANTC 3 cut(s) 164, 441, 452
HpaII CCGG 1 cut(s) 380
Hpy166II GTNNAC 1 cut(s) 126
Hpy188I TCNGA 4 cut(s) 136, 361, 451, 588
Hpy188III TCNNGA 4 cut(s) 161, 404, 438, 480
Hpy8I GTNNAC 1 cut(s) 126
HpyCH4III ACNGT 2 cut(s) 336, 629
HpyCH4V TGCA 2 cut(s) 8, 501
HpyF3I CTNAG 3 cut(s) 69, 116, 419
Hsp92II CATG 3 cut(s) 164, 196, 296
KpnI GGTACC 1 cut(s) 326
Kzo9I GATC 4 cut(s) 74, 271, 398, 487
LmnI GCTCC 3 cut(s) 84, 229, 296
MaeI CTAG 4 cut(s) 269, 413, 480, 582
MaeIII GTNAC 2 cut(s) 284, 525
MalI GATC 4 cut(s) 76, 273, 400, 489
MboI GATC 4 cut(s) 74, 271, 398, 487
MboII GAAGA 1 cut(s) 93
MfeI CAATTG 1 cut(s) 545
MflI RGATCY 4 cut(s) 74, 271, 398, 487
MlsI TGGCCA 1 cut(s) 641
MluCI AATT 9 cut(s) 237, 247, 355, 407, 431, 470, 502, 545, 592
MluNI TGGCCA 1 cut(s) 641
MlyI GAGTC 2 cut(s) 446, 450
MmeI TCCRAC 2 cut(s) 429, 594
MnlI CCTC 2 cut(s) 64, 544
Mox20I TGGCCA 1 cut(s) 641
Mph1103I ATGCAT 1 cut(s) 10
MscI TGGCCA 1 cut(s) 641
MseI TTAA 4 cut(s) 48, 197, 468, 703
MslI CAYNNNNRTG 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 641
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 1 cut(s) 380
MspR9I CCNGG 2 cut(s) 175, 320
MunI CAATTG 1 cut(s) 545
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 175, 320
NcoI CCATGG 1 cut(s) 292
NdeII GATC 4 cut(s) 74, 271, 398, 487
NlaIII CATG 3 cut(s) 164, 196, 296
NlaIV GGNNCC 4 cut(s) 86, 324, 373, 519
NmuCI GTSAC 1 cut(s) 525
NsiI ATGCAT 1 cut(s) 10
OliI CACNNNNGTG 1 cut(s) 512
PagI TCATGA 1 cut(s) 160
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 1 cut(s) 164
PflFI GACNNNGTC 1 cut(s) 130
PflMI CCANNNNNTGG 1 cut(s) 395
PleI GAGTC 2 cut(s) 446, 449
PpsI GAGTC 2 cut(s) 446, 449
Psp6I CCWGG 2 cut(s) 173, 318
PspGI CCWGG 2 cut(s) 173, 318
PspN4I GGNNCC 4 cut(s) 86, 324, 373, 519
PspPI GGNCC 1 cut(s) 152
PsuI RGATCY 4 cut(s) 74, 271, 398, 487
PsyI GACNNNGTC 1 cut(s) 130
PvuII CAGCTG 1 cut(s) 68
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
RseI CAYNNNNRTG 1 cut(s) 512
SaqAI TTAA 4 cut(s) 48, 197, 468, 703
Sau3AI GATC 4 cut(s) 74, 271, 398, 487
Sau96I GGNCC 1 cut(s) 152
SchI GAGTC 2 cut(s) 446, 450
ScrFI CCNGG 2 cut(s) 175, 320
SfcI CTRYAG 2 cut(s) 332, 694
SmiMI CAYNNNNRTG 1 cut(s) 512
Sse9I AATT 9 cut(s) 237, 247, 355, 407, 431, 470, 502, 545, 592
SspI AATATT 1 cut(s) 201
SspMI CTAG 4 cut(s) 269, 413, 480, 582
StyD4I CCNGG 2 cut(s) 173, 318
StyI CCWWGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 336, 629
TaqI TCGA 1 cut(s) 405
TasI AATT 9 cut(s) 237, 247, 355, 407, 431, 470, 502, 545, 592
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 4 cut(s) 48, 197, 468, 703
Tru9I TTAA 4 cut(s) 48, 197, 468, 703
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 525
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 5 cut(s) 17, 149, 170, 177, 483
TspRI CASTG 1 cut(s) 534
Tth111I GACNNNGTC 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 395
XapI RAATTY 4 cut(s) 237, 407, 431, 592
XbaI TCTAGA 1 cut(s) 479
XcmI CCANNNNNNNNNTGG 1 cut(s) 199
XspI CTAG 4 cut(s) 269, 413, 480, 582
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.