Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8199018.1

Orthogroup ID

OG0022567

Physical Location & Seq

Genomic Coordinates Reverse (-)

147 .. 521

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8199018.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

atgcaggcctcgctttctctccctactctctcccccaccattcccagatcaaactacgtcgttcagtccacgctgcctctcgctccctccaagccgatcaatctccgcttctgcggtctccggcgagaggccttcgggttctcctcgctcggccagtccgactcgcaccgtttccggctcgcggcggcttcgcggtccaagaaggtttcggcggccttgtctgataatggaagccctccgaagtcgttcgactacgacttgctcatcatcggagccggcgtcggcggccacggcgctgctctccacgccgtcgagaaggtacggttttctgacagtgacactcgtttggattttgctgacaggttgtggctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004148 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006082 GO:0006084 GO:0006085 GO:0006086 GO:0006090 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032787 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046685 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

Pyr_redox_2 Pyr_redox_dim

Protein Analysis

124

Amino Acids

13.36

Weight (kDa)

9.89

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022567)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g13240
rosa_multiflora	Rmu_co8199018.1_g000001 Rmu_sc0003885.1_g000007 Rmu_sc0003942.1_g000027

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	182, 193
AciI	CCGC	7 cut(s)	106, 114, 182, 185, 193, 212, 285
AcoI	YGGCCR	2 cut(s)	151, 286
AcyI	GRCGYC	1 cut(s)	279
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	2 cut(s)	127, 181
Alw26I	GTCTC	1 cut(s)	122
AoxI	GGCC	5 cut(s)	6, 129, 151, 213, 286
ApeKI	GCWGC	2 cut(s)	73, 296
Asp700I	GAANNNNTTC	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	296
AspS9I	GGNCC	1 cut(s)	195
AvaII	GGWCC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	60, 283
BceAI	ACGGC	2 cut(s)	293, 307
BcoDI	GTCTC	1 cut(s)	122
BfoI	RGCGCY	1 cut(s)	297
BisI	GCNGC	6 cut(s)	74, 183, 186, 213, 286, 297
BlsI	GCNGC	6 cut(s)	75, 184, 187, 214, 287, 298
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	279
BsaI	GGTCTC	1 cut(s)	122
BsaJI	CCNNGG	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 181
Bse118I	RCCGGY	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	154
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	127, 181
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	2 cut(s)	60, 283
Bsh1236I	CGCG	2 cut(s)	182, 193
BshFI	GGCC	5 cut(s)	8, 131, 153, 215, 288
BsiSI	CCGG	3 cut(s)	121, 175, 276
BslI	CCNNNNNNNGG	2 cut(s)	127, 181
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	5 cut(s)	8, 131, 153, 215, 288
Bso31I	GGTCTC	1 cut(s)	122
Bsp143I	GATC	2 cut(s)	47, 96
BspACI	CCGC	7 cut(s)	106, 114, 182, 185, 193, 212, 285
BspANI	GGCC	5 cut(s)	8, 131, 153, 215, 288
BspFNI	CGCG	2 cut(s)	182, 193
BspLI	GGNNCC	1 cut(s)	274
BspTNI	GGTCTC	1 cut(s)	122
BsrFI	RCCGGY	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	47, 96
BssNI	GRCGYC	1 cut(s)	279
Bst4CI	ACNGT	3 cut(s)	170, 324, 335
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	3 cut(s)	6, 180, 277
BstDSI	CCRYGG	1 cut(s)	289
BstFNI	CGCG	2 cut(s)	182, 193
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	2 cut(s)	50, 99
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	2 cut(s)	47, 96
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 285, 291, 305
BstUI	CGCG	2 cut(s)	182, 193
BstV1I	GCAGC	2 cut(s)	60, 283
BsuRI	GGCC	5 cut(s)	8, 131, 153, 215, 288
BtgI	CCRYGG	1 cut(s)	289
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	6, 180, 277
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	275
Cfr13I	GGNCC	1 cut(s)	195
CseI	GACGC	1 cut(s)	268
Csp6I	GTAC	1 cut(s)	320
CviQI	GTAC	1 cut(s)	320
DpnI	GATC	2 cut(s)	49, 98
DpnII	GATC	2 cut(s)	47, 96
EaeI	YGGCCR	2 cut(s)	151, 286
Eco147I	AGGCCT	2 cut(s)	8, 131
Eco31I	GGTCTC	1 cut(s)	122
Eco47I	GGWCC	1 cut(s)	195
Fnu4HI	GCNGC	6 cut(s)	74, 183, 186, 213, 286, 297
Fsp4HI	GCNGC	6 cut(s)	74, 183, 186, 213, 286, 297
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	6 cut(s)	74, 183, 186, 213, 286, 297
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	5 cut(s)	8, 131, 153, 215, 288
HapII	CCGG	3 cut(s)	121, 175, 276
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	296
Hin1I	GRCGYC	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	3 cut(s)	121, 175, 276
Hpy166II	GTNNAC	1 cut(s)	69
Hpy188I	TCNGA	6 cut(s)	160, 223, 240, 272, 331, 374
Hpy188III	TCNNGA	1 cut(s)	313
Hpy8I	GTNNAC	1 cut(s)	69
Hpy99I	CGWCG	3 cut(s)	62, 284, 314
HpyAV	CCTTC	3 cut(s)	142, 196, 310
HpyCH4III	ACNGT	3 cut(s)	170, 324, 335
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 285, 291, 305
HpySE526I	ACGT	1 cut(s)	57
Hsp92I	GRCGYC	1 cut(s)	279
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	275
KroNI	GCCGGC	1 cut(s)	277
Kzo9I	GATC	2 cut(s)	47, 96
LmnI	GCTCC	2 cut(s)	88, 272
LpnPI	CCDG	6 cut(s)	58, 134, 167, 188, 289, 346
Lsp1109I	GCAGC	2 cut(s)	60, 283
MaeII	ACGT	1 cut(s)	57
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	2 cut(s)	49, 98
MboI	GATC	2 cut(s)	47, 96
MlyI	GAGTC	1 cut(s)	155
MmeI	TCCRAC	1 cut(s)	183
MnlI	CCTC	6 cut(s)	19, 87, 97, 121, 154, 246
MroNI	GCCGGC	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	245
MspI	CCGG	3 cut(s)	121, 175, 276
MvnI	CGCG	2 cut(s)	182, 193
MwoI	GCNNNNNNNGC	4 cut(s)	10, 285, 291, 305
NaeI	GCCGGC	1 cut(s)	277
NdeII	GATC	2 cut(s)	47, 96
NgoMIV	GCCGGC	1 cut(s)	275
NlaIV	GGNNCC	1 cut(s)	274
NmeAIII	GCCGAG	1 cut(s)	129
NmuCI	GTSAC	1 cut(s)	335
PceI	AGGCCT	2 cut(s)	8, 131
PcsI	WCGNNNNNNNCGW	2 cut(s)	156, 276
PdiI	GCCGGC	1 cut(s)	277
PdmI	GAANNNNTTC	1 cut(s)	245
PkrI	GCNGC	6 cut(s)	75, 184, 187, 214, 287, 298
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PspN4I	GGNNCC	1 cut(s)	274
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SatI	GCNGC	6 cut(s)	74, 183, 186, 213, 286, 297
Sau3AI	GATC	2 cut(s)	47, 96
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	155
SetI	ASST	4 cut(s)	60, 207, 321, 365
SinI	GGWCC	1 cut(s)	195
SseBI	AGGCCT	2 cut(s)	8, 131
SsiI	CCGC	7 cut(s)	106, 114, 182, 185, 193, 212, 285
StuI	AGGCCT	2 cut(s)	8, 131
TaaI	ACNGT	3 cut(s)	170, 324, 335
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	2 cut(s)	249, 312
TauI	GCSGC	4 cut(s)	185, 188, 215, 288
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	73, 296
Tsp45I	GTSAC	1 cut(s)	335
TspRI	CASTG	1 cut(s)	340
VpaK11BI	GGWCC	1 cut(s)	195
XmnI	GAANNNNTTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.