Rmu_sc0003885.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003885.1
OG0022567
Physical Location & Seq
Reverse (-)
24119 .. 25183
1065 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003885.1_g000007.1.cds

Sequence Viewer

Length: 654 bp
atggtcggcggttacaaagaagaagcacagttttgcaaggcacatgtgtccgtctcgctagggttcttccagccagctttcttgggtactctgctctttcctgttgatgtttccatcaagaagaagactccaattgtctcatgggccatcatcttcgtgctgtcaacatgtgttccattgctattggtccagatattcttcttgttctctccgatagataagatgctgttacccaagaattgggccaacaagggcaaagcccatacaggactctctctctccaccctccctcctggtttccactcgggcaatccactcttggttccggatgcctcgctttctctccctactctctctcccaccattcccagatcaaaatgtgtcgttcagtcggcgctgcctctcactccgtccaagctgatcaatctccgcttctacggtctctggcgagaggccttcgggttctcctcgctcagccagtctgactcgcaccgcatctggctcgtggcggcgtcgtcgtccaagaagatttgggcgccttgtctggtaatggaagcgctccgaagttggtcaactacaatttgctcatcatcggcgccggtgtcggcagccacggcgctgctcaaatttcgtggctttttttgttgggtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

217

Amino Acids

23.72

Weight (kDa)

9.76

Isoelectric Point (pI)

40.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022567)

Species Orthologous Gene IDs
pyrus_communis pycom16g13240
rosa_multiflora Rmu_co8199018.1_g000001 Rmu_sc0003885.1_g000007 Rmu_sc0003942.1_g000027

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 535, 595
AccB7I CCANNNNNTGG 1 cut(s) 240
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 4 cut(s) 9, 430, 493, 509
AcsI RAATTY 1 cut(s) 626
AcyI GRCGYC 3 cut(s) 512, 536, 596
AfaI GTAC 1 cut(s) 88
AfeI AGCGCT 1 cut(s) 558
AfiI CCNNNNNNNGG 1 cut(s) 240
AflIII ACRYGT 2 cut(s) 43, 167
AjnI CCWGG 1 cut(s) 292
AluBI AGCT 2 cut(s) 77, 418
AluI AGCT 2 cut(s) 77, 418
Alw26I GTCTC 3 cut(s) 58, 142, 446
Ama87I CYCGRG 1 cut(s) 304
Aor13HI TCCGGA 1 cut(s) 325
Aor51HI AGCGCT 1 cut(s) 558
AoxI GGCC 3 cut(s) 144, 243, 453
ApeKI GCWGC 3 cut(s) 397, 608, 619
ApoI RAATTY 1 cut(s) 626
AspLEI GCGC 5 cut(s) 397, 538, 559, 598, 619
AspS9I GGNCC 3 cut(s) 144, 187, 243
AvaI CYCGRG 1 cut(s) 304
AvaII GGWCC 1 cut(s) 187
BanI GGYRCC 2 cut(s) 535, 595
BauI CACGAG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 131
BbvI GCAGC 3 cut(s) 384, 606, 620
BccI CCATC 2 cut(s) 122, 155
BceAI ACGGC 1 cut(s) 630
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 1 cut(s) 294
BclI TGATCA 1 cut(s) 420
BcoDI GTCTC 3 cut(s) 58, 142, 446
BfaI CTAG 1 cut(s) 59
BfoI RGCGCY 5 cut(s) 398, 539, 560, 599, 620
BisI GCNGC 4 cut(s) 398, 510, 609, 620
BlpI GCTNAGC 1 cut(s) 473
BlsI GCNGC 4 cut(s) 399, 511, 610, 621
Bme1390I CCNGG 1 cut(s) 294
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 304
BmgT120I GGNCC 3 cut(s) 144, 187, 243
BmiI GGNNCC 3 cut(s) 324, 537, 597
BmrFI CCNGG 1 cut(s) 294
BmsI GCATC 3 cut(s) 213, 319, 504
BpiI GAAGAC 1 cut(s) 131
Bpu1102I GCTNAGC 1 cut(s) 473
BsaHI GRCGYC 3 cut(s) 512, 536, 596
BsaI GGTCTC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 612
BsaWI WCCGGW 1 cut(s) 325
BsaXI ACNNNNNCTCC 4 cut(s) 274, 304, 340, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 598
Bse1I ACTGG 1 cut(s) 478
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 1 cut(s) 294
BseDI CCNNGG 1 cut(s) 612
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 176
BseMII CTCAG 1 cut(s) 487
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 1 cut(s) 457
BseXI GCAGC 3 cut(s) 384, 606, 620
BshFI GGCC 3 cut(s) 146, 245, 455
BshNI GGYRCC 2 cut(s) 535, 595
BsiHKCI CYCGRG 1 cut(s) 304
BsiSI CCGG 2 cut(s) 326, 599
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 3 cut(s) 58, 142, 446
BsmBI CGTCTC 1 cut(s) 58
BsnI GGCC 3 cut(s) 146, 245, 455
Bso31I GGTCTC 1 cut(s) 446
BsoBI CYCGRG 1 cut(s) 304
Bsp13I TCCGGA 1 cut(s) 325
Bsp143I GATC 2 cut(s) 371, 420
Bsp1720I GCTNAGC 1 cut(s) 473
BspACI CCGC 4 cut(s) 9, 430, 493, 509
BspANI GGCC 3 cut(s) 146, 245, 455
BspCNI CTCAG 1 cut(s) 486
BspEI TCCGGA 1 cut(s) 325
BspLI GGNNCC 3 cut(s) 324, 537, 597
BspT107I GGYRCC 2 cut(s) 535, 595
BspTNI GGTCTC 1 cut(s) 446
BsrDI GCAATG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 598
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 598
BssECI CCNNGG 1 cut(s) 612
BssMI GATC 2 cut(s) 371, 420
BssNI GRCGYC 3 cut(s) 512, 536, 596
BssSI CACGAG 1 cut(s) 503
Bst2BI CACGAG 1 cut(s) 503
Bst2UI CCWGG 1 cut(s) 294
Bst4CI ACNGT 2 cut(s) 30, 440
BstACI GRCGYC 3 cut(s) 512, 536, 596
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 1 cut(s) 473
BstDSI CCRYGG 1 cut(s) 612
BstF5I GGATG 1 cut(s) 334
BstH2I RGCGCY 5 cut(s) 398, 539, 560, 599, 620
BstHHI GCGC 5 cut(s) 397, 538, 559, 598, 619
BstKTI GATC 2 cut(s) 374, 423
BstMAI GTCTC 3 cut(s) 58, 142, 446
BstMBI GATC 2 cut(s) 371, 420
BstMWI GCNNNNNNNGC 1 cut(s) 614
BstNI CCWGG 1 cut(s) 294
BstNSI RCATGY 2 cut(s) 47, 171
BstSCI CCNGG 1 cut(s) 292
BstV1I GCAGC 3 cut(s) 384, 606, 620
BstV2I GAAGAC 1 cut(s) 131
BsuRI GGCC 3 cut(s) 146, 245, 455
BtgI CCRYGG 1 cut(s) 612
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 5 cut(s) 397, 538, 559, 598, 619
Cfr10I RCCGGY 1 cut(s) 598
Cfr13I GGNCC 3 cut(s) 144, 187, 243
CseI GACGC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 87
CspCI CAANNNNNGTGG 2 cut(s) 613, 648
CviAII CATG 3 cut(s) 44, 141, 168
CviQI GTAC 1 cut(s) 87
DdeI CTNAG 1 cut(s) 473
DinI GGCGCC 2 cut(s) 537, 597
DpnI GATC 2 cut(s) 373, 422
DpnII GATC 2 cut(s) 371, 420
Eco147I AGGCCT 1 cut(s) 455
Eco31I GGTCTC 1 cut(s) 446
Eco47I GGWCC 1 cut(s) 187
Eco47III AGCGCT 1 cut(s) 558
Eco88I CYCGRG 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 292
EgeI GGCGCC 2 cut(s) 537, 597
EheI GGCGCC 2 cut(s) 537, 597
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 3 cut(s) 47, 144, 171
FaiI YATR 4 cut(s) 45, 142, 169, 264
FatI CATG 3 cut(s) 43, 140, 167
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 398, 510, 609, 620
FokI GGATG 1 cut(s) 341
Fsp4HI GCNGC 4 cut(s) 398, 510, 609, 620
FspBI CTAG 1 cut(s) 59
GlaI GCGC 5 cut(s) 396, 537, 558, 597, 618
GluI GCNGC 4 cut(s) 398, 510, 609, 620
HaeII RGCGCY 5 cut(s) 398, 539, 560, 599, 620
HaeIII GGCC 3 cut(s) 146, 245, 455
HapII CCGG 2 cut(s) 326, 599
HgaI GACGC 1 cut(s) 501
HhaI GCGC 5 cut(s) 397, 538, 559, 598, 619
Hin1I GRCGYC 3 cut(s) 512, 536, 596
Hin1II CATG 3 cut(s) 47, 144, 171
Hin6I GCGC 5 cut(s) 395, 536, 557, 596, 617
HinP1I GCGC 5 cut(s) 395, 536, 557, 596, 617
HincII GTYRAC 2 cut(s) 165, 573
HindII GTYRAC 2 cut(s) 165, 573
HinfI GANTC 3 cut(s) 127, 270, 485
HpaII CCGG 2 cut(s) 326, 599
Hpy166II GTNNAC 2 cut(s) 165, 573
Hpy188I TCNGA 3 cut(s) 213, 484, 563
Hpy188III TCNNGA 3 cut(s) 118, 190, 326
Hpy8I GTNNAC 2 cut(s) 165, 573
Hpy99I CGWCG 2 cut(s) 517, 520
HpyAV CCTTC 1 cut(s) 466
HpyCH4III ACNGT 2 cut(s) 30, 440
HpyCH4V TGCA 1 cut(s) 36
HpyF10VI GCNNNNNNNGC 1 cut(s) 614
HpyF3I CTNAG 1 cut(s) 473
Hsp92I GRCGYC 3 cut(s) 512, 536, 596
Hsp92II CATG 3 cut(s) 47, 144, 171
HspAI GCGC 5 cut(s) 395, 536, 557, 596, 617
KasI GGCGCC 2 cut(s) 535, 595
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 1 cut(s) 420
Kzo9I GATC 2 cut(s) 371, 420
LmnI GCTCC 1 cut(s) 564
Lsp1109I GCAGC 3 cut(s) 384, 606, 620
LweI GCATC 3 cut(s) 213, 319, 504
MaeI CTAG 1 cut(s) 59
MaeIII GTNAC 2 cut(s) 11, 228
MalI GATC 2 cut(s) 373, 422
MboI GATC 2 cut(s) 371, 420
MboII GAAGA 7 cut(s) 32, 58, 133, 136, 145, 190, 538
MfeI CAATTG 1 cut(s) 132
MluCI AATT 4 cut(s) 132, 238, 579, 626
Mly113I GGCGCC 2 cut(s) 536, 596
MlyI GAGTC 3 cut(s) 121, 264, 479
MnlI CCTC 6 cut(s) 296, 300, 343, 411, 445, 478
MroI TCCGGA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 2 cut(s) 326, 599
MspR9I CCNGG 1 cut(s) 294
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 294
MwoI GCNNNNNNNGC 1 cut(s) 614
NarI GGCGCC 2 cut(s) 536, 596
NdeII GATC 2 cut(s) 371, 420
NlaIII CATG 3 cut(s) 47, 144, 171
NlaIV GGNNCC 3 cut(s) 324, 537, 597
NspI RCATGY 2 cut(s) 47, 171
PceI AGGCCT 1 cut(s) 455
PciI ACATGT 2 cut(s) 43, 167
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 4 cut(s) 399, 511, 610, 621
PleI GAGTC 3 cut(s) 121, 264, 479
PluTI GGCGCC 2 cut(s) 539, 599
PpsI GAGTC 3 cut(s) 121, 264, 479
PscI ACATGT 2 cut(s) 43, 167
Psp6I CCWGG 1 cut(s) 292
PspGI CCWGG 1 cut(s) 292
PspN4I GGNNCC 3 cut(s) 324, 537, 597
PspPI GGNCC 3 cut(s) 144, 187, 243
RsaI GTAC 1 cut(s) 88
RsaNI GTAC 1 cut(s) 87
RseI CAYNNNNRTG 1 cut(s) 155
SatI GCNGC 4 cut(s) 398, 510, 609, 620
Sau3AI GATC 2 cut(s) 371, 420
Sau96I GGNCC 3 cut(s) 144, 187, 243
SchI GAGTC 3 cut(s) 121, 264, 479
ScrFI CCNGG 1 cut(s) 294
SetI ASST 2 cut(s) 79, 420
SfaNI GCATC 3 cut(s) 213, 319, 504
SfoI GGCGCC 2 cut(s) 537, 597
SgrAI CRCCGGYG 1 cut(s) 598
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 4 cut(s) 132, 238, 579, 626
SseBI AGGCCT 1 cut(s) 455
SsiI CCGC 4 cut(s) 9, 430, 493, 509
SspDI GGCGCC 2 cut(s) 535, 595
SspMI CTAG 1 cut(s) 59
StuI AGGCCT 1 cut(s) 455
StyD4I CCNGG 1 cut(s) 292
TaaI ACNGT 2 cut(s) 30, 440
TasI AATT 4 cut(s) 132, 238, 579, 626
TauI GCSGC 1 cut(s) 512
TseI GCWGC 3 cut(s) 397, 608, 619
TspGWI ACGGA 2 cut(s) 40, 399
Van91I CCANNNNNTGG 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 1 cut(s) 626
XceI RCATGY 2 cut(s) 47, 171
XcmI CCANNNNNNNNNTGG 1 cut(s) 138
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.