Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8264529.1

Orthogroup ID

OG0023157

Physical Location & Seq

Genomic Coordinates Reverse (-)

107 .. 745

Gene Structure 639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8264529.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

atgacagcgctacaaggaaagcacgcaaatggtgaaaatgcatggattggcatagatggtaacactggtgccatgactgacgtaaaagagaaaaagatctgggatgcctacaatgtgaaggcacagacctttaagacagccatagaaagtgcttgcctacttctcagaattgatgacattgtgagtgggattaagaagaagcagcctgctggaagcaaagctccttcaaagcctcaagttgagacagaaggagatgcagataatgagcaaataattcccgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

94

Amino Acids

10.14

Weight (kDa)

5.38

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023157)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8264529.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114630 Rroxscaffold_2G00133060
rosa_samantha	Rh5AG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	9
AgsI	TTSAA	1 cut(s)	228
AluBI	AGCT	1 cut(s)	221
AluI	AGCT	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	236
Ama87I	CYCGRG	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	9
ApeKI	GCWGC	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	10
AsuHPI	GGTGA	1 cut(s)	44
AvaI	CYCGRG	1 cut(s)	278
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	214
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	1 cut(s)	236
BfoI	RGCGCY	1 cut(s)	11
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	1 cut(s)	203
BlsI	GCNGC	1 cut(s)	204
BmeT110I	CYCGRG	1 cut(s)	278
BmiI	GGNNCC	1 cut(s)	70
BmsI	GCATC	2 cut(s)	94, 244
BpuEI	CTTGAG	1 cut(s)	219
Bse1I	ACTGG	1 cut(s)	70
BseGI	GGATG	1 cut(s)	109
BseMII	CTCAG	1 cut(s)	178
BseNI	ACTGG	1 cut(s)	70
BseXI	GCAGC	1 cut(s)	214
BshNI	GGYRCC	1 cut(s)	68
BsiHKCI	CYCGRG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	236
BsoBI	CYCGRG	1 cut(s)	278
Bsp143I	GATC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	70
BssMI	GATC	1 cut(s)	96
BstC8I	GCNNGC	3 cut(s)	24, 154, 207
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	109
BstH2I	RGCGCY	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	10
BstKTI	GATC	1 cut(s)	99
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	214
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	1 cut(s)	63
Cac8I	GCNNGC	3 cut(s)	24, 154, 207
CfoI	GCGC	1 cut(s)	10
CviAII	CATG	2 cut(s)	42, 73
CviJI	RGCY	4 cut(s)	140, 205, 221, 232
CviKI_1	RGCY	4 cut(s)	140, 205, 221, 232
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	98
DpnII	GATC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	278
EcoT22I	ATGCAT	1 cut(s)	43
FaeI	CATG	2 cut(s)	45, 76
FaiI	YATR	4 cut(s)	43, 53, 74, 143
FatI	CATG	2 cut(s)	41, 72
Fnu4HI	GCNGC	1 cut(s)	203
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	203
GlaI	GCGC	1 cut(s)	9
GluI	GCNGC	1 cut(s)	203
HaeII	RGCGCY	1 cut(s)	11
HhaI	GCGC	1 cut(s)	10
Hin1II	CATG	2 cut(s)	45, 76
Hin6I	GCGC	1 cut(s)	8
HinP1I	GCGC	1 cut(s)	8
HphI	GGTGA	1 cut(s)	44
Hpy188I	TCNGA	1 cut(s)	167
Hpy188III	TCNNGA	1 cut(s)	278
HpyAV	CCTTC	3 cut(s)	112, 234, 242
HpyCH4IV	ACGT	1 cut(s)	81
HpyCH4V	TGCA	2 cut(s)	41, 257
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	45, 76
HspAI	GCGC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	96
LmnI	GCTCC	1 cut(s)	226
LpnPI	CCDG	4 cut(s)	51, 85, 195, 219
Lsp1109I	GCAGC	1 cut(s)	214
LweI	GCATC	2 cut(s)	94, 244
MaeII	ACGT	1 cut(s)	81
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	98
MboI	GATC	1 cut(s)	96
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	2 cut(s)	168, 273
MnlI	CCTC	1 cut(s)	243
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	2 cut(s)	132, 192
MslI	CAYNNNNRTG	1 cut(s)	27
NdeII	GATC	1 cut(s)	96
NlaIII	CATG	2 cut(s)	45, 76
NlaIV	GGNNCC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	43
PkrI	GCNGC	1 cut(s)	204
PspN4I	GGNNCC	1 cut(s)	70
PsuI	RGATCY	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	27
SaqAI	TTAA	2 cut(s)	132, 192
SatI	GCNGC	1 cut(s)	203
Sau3AI	GATC	1 cut(s)	96
SetI	ASST	3 cut(s)	84, 131, 223
SfaNI	GCATC	2 cut(s)	94, 244
SmiMI	CAYNNNNRTG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	234
SmoI	CTYRAG	1 cut(s)	234
Sse9I	AATT	2 cut(s)	168, 273
TaiI	ACGT	1 cut(s)	84
TasI	AATT	2 cut(s)	168, 273
Tru1I	TTAA	2 cut(s)	132, 192
Tru9I	TTAA	2 cut(s)	132, 192
TscAI	CASTG	1 cut(s)	70
TseI	GCWGC	1 cut(s)	202
TspRI	CASTG	1 cut(s)	70
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.