Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0023157

Physical Location & Seq

Genomic Coordinates Forward (+)

40804277 .. 40810314

Gene Structure 6038 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00114630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCAATCCCAAGTGCTCGTTCTCAAGGACTCTTTGAAGCGGGAGTCTGGGAGTAAAGTGCACCATGCTAATATCCAGGCTTCAAAGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCGAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTATTGTAGTAACCAATGACGGGAATGCCATTCTGCGAGAATTGGATCTTGCGCACCCAGCAGCAAAGTCGATGATTGAATTAAGCCGCACACAAGATGAAGAAGTCGGTGATGGAACAACATCTGTCATTATTCTTGCTGGTGAGATGTTACACGTTGCCGAAGCATTTATTGACCAGCATTTTCATCCTACTGTCATTTGCCGAGGAGGAAGAGAAAGTAGAAGAAGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

6.58

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	31 - 127	1.6e-39	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0023157)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8264529.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114630 Rroxscaffold_2G00133060
rosa_samantha	Rh5AG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AciI	CCGC	2 cut(s)	40, 247
AclWI	GGATC	1 cut(s)	213
AfaI	GTAC	2 cut(s)	109, 391
AfiI	CCNNNNNNNGG	1 cut(s)	180
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	3 cut(s)	37, 84, 239
AjnI	CCWGG	1 cut(s)	75
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
Alw21I	GWGCWC	2 cut(s)	18, 63
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	1 cut(s)	221
AspLEI	GCGC	1 cut(s)	214
AspS9I	GGNCC	2 cut(s)	119, 126
AsuHPI	GGTGA	2 cut(s)	281, 314
AvaII	GGWCC	2 cut(s)	119, 126
BaeGI	GKGCMC	1 cut(s)	63
Bbv12I	GWGCWC	2 cut(s)	18, 63
BbvI	GCAGC	1 cut(s)	233
BccI	CCATC	1 cut(s)	266
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	153
BisI	GCNGC	2 cut(s)	222, 247
BlsI	GCNGC	2 cut(s)	223, 248
Bme1390I	CCNGG	1 cut(s)	77
Bme18I	GGWCC	2 cut(s)	119, 126
BmgT120I	GGNCC	2 cut(s)	119, 126
BmiI	GGNNCC	1 cut(s)	120
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	129, 139
BoxI	GACNNNNGTC	1 cut(s)	124
BpuEI	CTTGAG	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	114, 122, 364
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse1I	ACTGG	1 cut(s)	150
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	3 cut(s)	114, 122, 364
BseGI	GGATG	3 cut(s)	102, 154, 346
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseNI	ACTGG	1 cut(s)	150
BseRI	GAGGAG	1 cut(s)	381
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	1 cut(s)	233
BseYI	CCCAGC	1 cut(s)	217
BsiHKAI	GWGCWC	2 cut(s)	18, 63
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	190
Bsp1286I	GDGCHC	2 cut(s)	18, 63
Bsp143I	GATC	1 cut(s)	205
BspACI	CCGC	2 cut(s)	40, 247
BspLI	GGNNCC	1 cut(s)	120
BspPI	GGATC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	150
BssECI	CCNNGG	3 cut(s)	114, 122, 364
BssMI	GATC	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	1 cut(s)	367
BstF5I	GGATG	3 cut(s)	102, 154, 346
BstHHI	GCGC	1 cut(s)	214
BstKTI	GATC	1 cut(s)	208
BstMBI	GATC	1 cut(s)	205
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 218
BstNI	CCWGG	1 cut(s)	77
BstPAI	GACNNNNGTC	1 cut(s)	124
BstSCI	CCNGG	1 cut(s)	75
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	1 cut(s)	233
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
BtsCI	GGATG	3 cut(s)	102, 154, 346
CfoI	GCGC	1 cut(s)	214
Cfr13I	GGNCC	2 cut(s)	119, 126
Csp6I	GTAC	2 cut(s)	108, 390
CviAII	CATG	2 cut(s)	65, 130
CviJI	RGCY	3 cut(s)	80, 89, 246
CviKI_1	RGCY	3 cut(s)	80, 89, 246
CviQI	GTAC	2 cut(s)	108, 390
DpnI	GATC	1 cut(s)	207
DpnII	GATC	1 cut(s)	205
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	119, 126
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	114
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	2 cut(s)	68, 133
FaiI	YATR	2 cut(s)	66, 131
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	2 cut(s)	64, 129
FauI	CCCGC	1 cut(s)	33
Fnu4HI	GCNGC	2 cut(s)	222, 247
FokI	GGATG	3 cut(s)	89, 161, 333
Fsp4HI	GCNGC	2 cut(s)	222, 247
FspBI	CTAG	1 cut(s)	153
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	1 cut(s)	213
GluI	GCNGC	2 cut(s)	222, 247
GsaI	CCCAGC	1 cut(s)	221
HhaI	GCGC	1 cut(s)	214
Hin1II	CATG	2 cut(s)	68, 133
Hin6I	GCGC	1 cut(s)	212
HinP1I	GCGC	1 cut(s)	212
HinfI	GANTC	2 cut(s)	29, 44
HphI	GGTGA	2 cut(s)	281, 314
Hpy166II	GTNNAC	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	2 cut(s)	4, 61
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 218
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	68, 133
HspAI	GCGC	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	205
LpnPI	CCDG	7 cut(s)	33, 62, 89, 131, 231, 285, 350
Lsp1109I	GCAGC	1 cut(s)	233
LweI	GCATC	2 cut(s)	129, 139
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	1 cut(s)	315
MaeIII	GTNAC	2 cut(s)	169, 309
MalI	GATC	1 cut(s)	207
MboI	GATC	1 cut(s)	205
MboII	GAAGA	3 cut(s)	272, 384, 396
MflI	RGATCY	1 cut(s)	205
MhlI	GDGCHC	2 cut(s)	18, 63
MluCI	AATT	2 cut(s)	200, 239
MlyI	GAGTC	2 cut(s)	23, 53
MnlI	CCTC	4 cut(s)	117, 152, 359, 362
MseI	TTAA	2 cut(s)	134, 242
MspR9I	CCNGG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	86, 218
NdeII	GATC	1 cut(s)	205
NlaIII	CATG	2 cut(s)	68, 133
NlaIV	GGNNCC	1 cut(s)	120
NmeAIII	GCCGAG	1 cut(s)	389
NsbI	TGCGCA	1 cut(s)	213
PctI	GAATGC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	223, 248
PleI	GAGTC	2 cut(s)	23, 52
PpsI	GAGTC	2 cut(s)	23, 52
PshAI	GACNNNNGTC	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	120
PspPI	GGNCC	2 cut(s)	119, 126
PsuI	RGATCY	1 cut(s)	205
RsaI	GTAC	2 cut(s)	109, 391
RsaNI	GTAC	2 cut(s)	108, 390
SaqAI	TTAA	2 cut(s)	134, 242
SatI	GCNGC	2 cut(s)	222, 247
Sau3AI	GATC	1 cut(s)	205
Sau96I	GGNCC	2 cut(s)	119, 126
SchI	GAGTC	2 cut(s)	23, 53
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	18, 63
SetI	ASST	5 cut(s)	116, 128, 163, 318, 395
SfaNI	GCATC	2 cut(s)	129, 139
SinI	GGWCC	2 cut(s)	119, 126
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	2 cut(s)	200, 239
SsiI	CCGC	2 cut(s)	40, 247
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	355
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	200, 239
TauI	GCSGC	1 cut(s)	249
Tru1I	TTAA	2 cut(s)	134, 242
Tru9I	TTAA	2 cut(s)	134, 242
TseI	GCWGC	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	273, 335
TspGWI	ACGGA	1 cut(s)	95
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	119, 126
XspI	CTAG	1 cut(s)	153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.