Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0023157

Physical Location & Seq

Genomic Coordinates Reverse (-)

21685468 .. 21690028

Gene Structure 4561 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG188700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGCAATCCCAAGTGCTCGTTCTCAAGGACTCTTTGAAGCGGGAGTCTGGGAGTAAAGTGCACCATGCTAATATCCAGGCTTCAAAGGCTGTTGCTGACATCATCCGTACAACCTTGGGACCGAGGTCCATGTTAAAGATGCTACTGGATGCTAGTGGAGGTATTGTAGTAACCAATGATGGGAATGCCATTCTGCGAGAATTGGATCTTGCGCACCCTGCAGCAAAGTCGATGATTGAATTAAGCCGCACACAAGATGAAGAAGTCGGTGATGGAACAACATCTGTCATTATTCTTGCTGGTGAGATGTTACATGTTGCCGAAGCATTTATTGACCAGCATTTTCATCCTACTGTCATTTGCCGAGCCTACAATAAAGCCCTGGAAGATGCTATTGCTGTGCTTGACAAAATAGCAATGACCATTGACGTGACAGATCATCCACTGATGACACCTGTAGGGCAAAATGGAAGCTGGACACCTATATCTGTGTCCAATGGCAATTCCGCAATTTGGCCATATGAAGCTGCTGCTGTAGCTTTTGAGGCTATACCACGAACATTGGCTCAGAACTGTGGGGTTAATGTCATTAGAACGATGACAGCGCTGCAAGGAAAGCACGCAAATGGTGAAAATGCATGGATTGGCATAGATGGTAACACTGGTGCCATGACTGACGTAAAAGAGAAAAAGATCTGGGATGCCTACAATGTGAAGGCACAGACCTTTAAGACAGCCATAGAAAGTGCTTGCCTACTTCTCAGAATTGATGACATTGTGAGTGGGATTAAGAAGAAGCAGCCTGCTGGAAGCAAAGCTCCTTCAAAGCCTCAAGTTGAGACAGAAGGAGACGCAGATAATGAGCAAATAATTCCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0005975 GO:0006457 GO:0006458 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006884 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0008361 GO:0009311 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009826 GO:0009987 GO:0009992 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019725 GO:0023052 GO:0030104 GO:0032502 GO:0032535 GO:0032989 GO:0032991 GO:0036211 GO:0040007 GO:0042221 GO:0042493 GO:0042592 GO:0043170 GO:0043412 GO:0044183 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046677 GO:0048589 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051716 GO:0055082 GO:0060560 GO:0061077 GO:0065007 GO:0065008 GO:0071704 GO:0071840 GO:0090066 GO:0101031 GO:0140096 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

293

Amino Acids

31.47

Weight (kDa)

5.52

Isoelectric Point (pI)

24.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	31 - 147	4.7e-44	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	174 - 261	3.1e-24	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023157)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8264529.1_g000001
rosa_roxburghii	Rroxscaffold_2G00114630 Rroxscaffold_2G00133060
rosa_samantha	Rh5AG188700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	665
AciI	CCGC	3 cut(s)	40, 247, 507
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	1 cut(s)	515
AfaI	GTAC	1 cut(s)	109
AfeI	AGCGCT	1 cut(s)	606
AfiI	CCNNNNNNNGG	2 cut(s)	180, 513
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	4 cut(s)	37, 84, 239, 825
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	2 cut(s)	75, 381
AjuI	GAANNNNNNNTTGG	1 cut(s)	35
AluBI	AGCT	4 cut(s)	474, 527, 539, 818
AluI	AGCT	4 cut(s)	474, 527, 539, 818
Alw21I	GWGCWC	2 cut(s)	18, 63
Alw26I	GTCTC	2 cut(s)	833, 843
Alw44I	GTGCAC	1 cut(s)	59
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	875
Aor51HI	AGCGCT	1 cut(s)	606
AoxI	GGCC	1 cut(s)	515
ApaLI	GTGCAC	1 cut(s)	59
ApeKI	GCWGC	5 cut(s)	221, 527, 530, 607, 799
AspLEI	GCGC	2 cut(s)	214, 607
AspS9I	GGNCC	2 cut(s)	119, 126
AsuHPI	GGTGA	3 cut(s)	281, 314, 641
AvaI	CYCGRG	1 cut(s)	875
AvaII	GGWCC	2 cut(s)	119, 126
BaeGI	GKGCMC	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	665
Bbv12I	GWGCWC	2 cut(s)	18, 63
BbvI	GCAGC	5 cut(s)	233, 514, 517, 594, 811
BccI	CCATC	3 cut(s)	173, 266, 647
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	2 cut(s)	77, 383
BcoDI	GTCTC	2 cut(s)	833, 843
BfaI	CTAG	1 cut(s)	153
BfmI	CTRYAG	3 cut(s)	219, 456, 534
BfoI	RGCGCY	1 cut(s)	608
BglII	AGATCT	1 cut(s)	693
BisI	GCNGC	6 cut(s)	222, 247, 528, 531, 608, 800
BlsI	GCNGC	6 cut(s)	223, 248, 529, 532, 609, 801
Bme1390I	CCNGG	2 cut(s)	77, 383
Bme18I	GGWCC	2 cut(s)	119, 126
BmeT110I	CYCGRG	1 cut(s)	875
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	119, 126
BmiI	GGNNCC	2 cut(s)	120, 667
BmrFI	CCNGG	2 cut(s)	77, 383
BmsI	GCATC	4 cut(s)	129, 139, 379, 691
BoxI	GACNNNNGTC	1 cut(s)	124
BpuEI	CTTGAG	2 cut(s)	8, 816
BsaJI	CCNNGG	3 cut(s)	114, 122, 381
BsaXI	ACNNNNNCTCC	2 cut(s)	150, 180
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 513
Bse1I	ACTGG	2 cut(s)	150, 667
Bse3DI	GCAATG	1 cut(s)	423
BseBI	CCWGG	2 cut(s)	77, 383
BseDI	CCNNGG	3 cut(s)	114, 122, 381
BseGI	GGATG	5 cut(s)	102, 154, 346, 439, 706
BseLI	CCNNNNNNNGG	2 cut(s)	180, 513
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	2 cut(s)	581, 775
BseNI	ACTGG	2 cut(s)	150, 667
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	5 cut(s)	233, 514, 517, 594, 811
BshFI	GGCC	1 cut(s)	517
BshNI	GGYRCC	1 cut(s)	665
BsiHKAI	GWGCWC	2 cut(s)	18, 63
BsiHKCI	CYCGRG	1 cut(s)	875
BslFI	GGGAC	1 cut(s)	132
BslI	CCNNNNNNNGG	2 cut(s)	180, 513
BsmAI	GTCTC	2 cut(s)	833, 843
BsmBI	CGTCTC	1 cut(s)	843
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	517
BsoBI	CYCGRG	1 cut(s)	875
Bsp1286I	GDGCHC	2 cut(s)	18, 63
Bsp143I	GATC	3 cut(s)	205, 436, 693
BspACI	CCGC	3 cut(s)	40, 247, 507
BspANI	GGCC	1 cut(s)	517
BspCNI	CTCAG	2 cut(s)	580, 774
BspLI	GGNNCC	2 cut(s)	120, 667
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	1 cut(s)	213
BspT107I	GGYRCC	1 cut(s)	665
BsrDI	GCAATG	1 cut(s)	423
BsrI	ACTGG	2 cut(s)	150, 667
BssECI	CCNNGG	3 cut(s)	114, 122, 381
BssMI	GATC	3 cut(s)	205, 436, 693
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	77, 383
Bst4CI	ACNGT	2 cut(s)	355, 575
BstC8I	GCNNGC	3 cut(s)	621, 751, 804
BstDEI	CTNAG	2 cut(s)	567, 761
BstF5I	GGATG	5 cut(s)	102, 154, 346, 439, 706
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	2 cut(s)	214, 607
BstKTI	GATC	3 cut(s)	208, 439, 696
BstMAI	GTCTC	2 cut(s)	833, 843
BstMBI	GATC	3 cut(s)	205, 436, 693
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 218, 536, 545, 616
BstNI	CCWGG	2 cut(s)	77, 383
BstNSI	RCATGY	1 cut(s)	317
BstPAI	GACNNNNGTC	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	75, 381
BstSFI	CTRYAG	3 cut(s)	219, 456, 534
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	5 cut(s)	233, 514, 517, 594, 811
BstX2I	RGATCY	2 cut(s)	205, 693
BstYI	RGATCY	2 cut(s)	205, 693
BsuRI	GGCC	1 cut(s)	517
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	5 cut(s)	102, 154, 346, 439, 706
BtsIMutI	CAGTG	2 cut(s)	443, 660
Cac8I	GCNNGC	3 cut(s)	621, 751, 804
CfoI	GCGC	2 cut(s)	214, 607
Cfr13I	GGNCC	2 cut(s)	119, 126
CseI	GACGC	1 cut(s)	860
Csp6I	GTAC	1 cut(s)	108
CspCI	CAANNNNNGTGG	2 cut(s)	543, 578
CviAII	CATG	5 cut(s)	65, 130, 314, 639, 670
CviQI	GTAC	1 cut(s)	108
DdeI	CTNAG	2 cut(s)	567, 761
DpnI	GATC	3 cut(s)	207, 438, 695
DpnII	GATC	3 cut(s)	205, 436, 693
EaeI	YGGCCR	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	114
Eco47I	GGWCC	2 cut(s)	119, 126
Eco47III	AGCGCT	1 cut(s)	606
Eco88I	CYCGRG	1 cut(s)	875
EcoRII	CCWGG	2 cut(s)	75, 381
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	640
ErhI	CCWWGG	1 cut(s)	114
Esp3I	CGTCTC	1 cut(s)	843
FaeI	CATG	5 cut(s)	68, 133, 317, 642, 673
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	5 cut(s)	64, 129, 313, 638, 669
FauI	CCCGC	1 cut(s)	33
FauNDI	CATATG	1 cut(s)	520
Fnu4HI	GCNGC	6 cut(s)	222, 247, 528, 531, 608, 800
FokI	GGATG	5 cut(s)	89, 161, 333, 426, 713
Fsp4HI	GCNGC	6 cut(s)	222, 247, 528, 531, 608, 800
FspBI	CTAG	1 cut(s)	153
FspI	TGCGCA	1 cut(s)	213
GlaI	GCGC	2 cut(s)	213, 606
GluI	GCNGC	6 cut(s)	222, 247, 528, 531, 608, 800
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	1 cut(s)	517
HgaI	GACGC	1 cut(s)	860
HhaI	GCGC	2 cut(s)	214, 607
Hin1II	CATG	5 cut(s)	68, 133, 317, 642, 673
Hin6I	GCGC	2 cut(s)	212, 605
HinP1I	GCGC	2 cut(s)	212, 605
HinfI	GANTC	2 cut(s)	29, 44
HphI	GGTGA	3 cut(s)	281, 314, 641
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	570, 764
Hpy188III	TCNNGA	1 cut(s)	875
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	709, 831, 839
HpyCH4III	ACNGT	2 cut(s)	355, 575
HpyCH4IV	ACGT	2 cut(s)	429, 678
HpyCH4V	TGCA	5 cut(s)	4, 61, 221, 610, 638
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 218, 536, 545, 616
HpyF3I	CTNAG	2 cut(s)	567, 761
HpySE526I	ACGT	2 cut(s)	429, 678
Hsp92II	CATG	5 cut(s)	68, 133, 317, 642, 673
HspAI	GCGC	2 cut(s)	212, 605
Kzo9I	GATC	3 cut(s)	205, 436, 693
LmnI	GCTCC	1 cut(s)	823
Lsp1109I	GCAGC	5 cut(s)	233, 514, 517, 594, 811
LweI	GCATC	4 cut(s)	129, 139, 379, 691
MaeI	CTAG	1 cut(s)	153
MaeII	ACGT	2 cut(s)	429, 678
MaeIII	GTNAC	4 cut(s)	169, 309, 430, 656
MalI	GATC	3 cut(s)	207, 438, 695
MboI	GATC	3 cut(s)	205, 436, 693
MboII	GAAGA	3 cut(s)	272, 398, 805
MflI	RGATCY	2 cut(s)	205, 693
MhlI	GDGCHC	2 cut(s)	18, 63
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	6 cut(s)	200, 239, 502, 510, 765, 870
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	2 cut(s)	23, 53
MnlI	CCTC	4 cut(s)	117, 152, 538, 840
Mox20I	TGGCCA	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	640
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	5 cut(s)	134, 242, 582, 729, 789
MslI	CAYNNNNRTG	2 cut(s)	428, 624
Msp20I	TGGCCA	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	77, 383
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	2 cut(s)	77, 383
MwoI	GCNNNNNNNGC	5 cut(s)	86, 218, 536, 545, 616
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	3 cut(s)	205, 436, 693
NlaIII	CATG	5 cut(s)	68, 133, 317, 642, 673
NlaIV	GGNNCC	2 cut(s)	120, 667
NmeAIII	GCCGAG	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	430
NsbI	TGCGCA	1 cut(s)	213
NsiI	ATGCAT	1 cut(s)	640
NspI	RCATGY	1 cut(s)	317
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	190
PkrI	GCNGC	6 cut(s)	223, 248, 529, 532, 609, 801
PleI	GAGTC	2 cut(s)	23, 52
PpsI	GAGTC	2 cut(s)	23, 52
PscI	ACATGT	1 cut(s)	313
PshAI	GACNNNNGTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	75, 381
PspGI	CCWGG	2 cut(s)	75, 381
PspN4I	GGNNCC	2 cut(s)	120, 667
PspPI	GGNCC	2 cut(s)	119, 126
PstI	CTGCAG	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	205, 693
RsaI	GTAC	1 cut(s)	109
RsaNI	GTAC	1 cut(s)	108
RseI	CAYNNNNRTG	2 cut(s)	428, 624
SaqAI	TTAA	5 cut(s)	134, 242, 582, 729, 789
SatI	GCNGC	6 cut(s)	222, 247, 528, 531, 608, 800
Sau3AI	GATC	3 cut(s)	205, 436, 693
Sau96I	GGNCC	2 cut(s)	119, 126
SchI	GAGTC	2 cut(s)	23, 53
ScrFI	CCNGG	2 cut(s)	77, 383
SduI	GDGCHC	2 cut(s)	18, 63
SfaNI	GCATC	4 cut(s)	129, 139, 379, 691
SfcI	CTRYAG	3 cut(s)	219, 456, 534
SinI	GGWCC	2 cut(s)	119, 126
SmiMI	CAYNNNNRTG	2 cut(s)	428, 624
SmlI	CTYRAG	2 cut(s)	23, 831
SmoI	CTYRAG	2 cut(s)	23, 831
Sse9I	AATT	6 cut(s)	200, 239, 502, 510, 765, 870
SsiI	CCGC	3 cut(s)	40, 247, 507
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	75, 381
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	355, 575
TaiI	ACGT	2 cut(s)	432, 681
TaqI	TCGA	1 cut(s)	230
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	6 cut(s)	200, 239, 502, 510, 765, 870
TauI	GCSGC	1 cut(s)	249
Tru1I	TTAA	5 cut(s)	134, 242, 582, 729, 789
Tru9I	TTAA	5 cut(s)	134, 242, 582, 729, 789
TscAI	CASTG	2 cut(s)	450, 667
TseFI	GTSAC	1 cut(s)	430
TseI	GCWGC	5 cut(s)	221, 527, 530, 607, 799
Tsp45I	GTSAC	1 cut(s)	430
TspDTI	ATGAA	3 cut(s)	273, 335, 537
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	2 cut(s)	450, 667
VneI	GTGCAC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	119, 126
XceI	RCATGY	1 cut(s)	317
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.