Rmu_co8271389.1_g000001

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8271389.1
OG0021287
Physical Location & Seq
Forward (+)
176 .. 828
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8271389.1_g000001.1.cds

Sequence Viewer

Length: 653 bp
atgcaacttcaccagatacaggcgcaggtaaccctccacggtttttcacagaatggctacgttaccccgaaattagtcacggcatgtgcggaactgaagcaaatgggttatgcccaccaggtgttcgatcaaattcctgaaccaaattttgctctatggaatgcattgttgagagggtatgcaaagaatgagagtcatagggaggttgtagctttgtttggtaggatgaagagcatggacataatgccgaattgctatacattccccgttgtgattaaatgttgtgggagattgagtaggttggtagaaggtgaagaggtgcattgtgttgtgataaaatgtgggtttagagcaaacccctttgtgggaacgacgctgatcgaaatgtatgcggctgggggagtaattggagctgcttataaggtgtttggtgagatgtttgagagaaatgtggttgcttggacttccatgattaatggctacgttttgggtggtgatatggtttctgcacagcgcctttttgatttggcgccagaacgagatgttgtgttgtggaacactatggtttctggttatattgagcagcgggatatggtaacggctagaaaactttttgataagatgccgagaagagatgttatttgctggaatac
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

218

Amino Acids

24.64

Weight (kDa)

8.15

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021287)

Species Orthologous Gene IDs
pyrus_communis pycom15g35110
rosa_multiflora Rmu_co8271389.1_g000001
rosa_samantha Rh4AG337300 Rh4CG360000 Rh4DG339800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 420
Acc36I ACCTGC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 529
AciI CCGC 3 cut(s) 89, 392, 586
AcsI RAATTY 2 cut(s) 132, 145
AcuI CTGAAG 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 530
AdeI CACNNNGTG 1 cut(s) 121
AfiI CCNNNNNNNGG 3 cut(s) 19, 364, 365
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 2 cut(s) 212, 413
AluI AGCT 2 cut(s) 212, 413
ApeKI GCWGC 2 cut(s) 413, 583
ApoI RAATTY 2 cut(s) 132, 145
AseI ATTAAT 1 cut(s) 474
AspLEI GCGC 3 cut(s) 25, 516, 532
AsuHPI GGTGA 3 cut(s) 323, 443, 506
BanI GGYRCC 1 cut(s) 529
BbvI GCAGC 2 cut(s) 400, 595
BceAI ACGGC 2 cut(s) 96, 615
BcgI CGANNNNNNTGC 2 cut(s) 371, 405
BciT130I CCWGG 1 cut(s) 119
BfaI CTAG 1 cut(s) 603
BfoI RGCGCY 2 cut(s) 517, 533
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 3 cut(s) 393, 414, 584
BlsI GCNGC 3 cut(s) 394, 415, 585
Bme1390I CCNGG 1 cut(s) 119
BmiI GGNNCC 1 cut(s) 531
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 1 cut(s) 612
BsaHI GRCGYC 1 cut(s) 530
BsaJI CCNNGG 1 cut(s) 37
BsaXI ACNNNNNCTCC 2 cut(s) 280, 310
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 364, 365
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 1 cut(s) 37
BseGI GGATG 1 cut(s) 231
BseLI CCNNNNNNNGG 3 cut(s) 19, 364, 365
BseXI GCAGC 2 cut(s) 400, 595
BseYI CCCAGC 1 cut(s) 395
BsgI GTGCAG 1 cut(s) 492
BshNI GGYRCC 1 cut(s) 529
BslI CCNNNNNNNGG 3 cut(s) 19, 364, 365
BsmI GAATGC 1 cut(s) 166
Bsp143I GATC 2 cut(s) 127, 378
BspACI CCGC 3 cut(s) 89, 392, 586
BspLI GGNNCC 1 cut(s) 531
BspMI ACCTGC 1 cut(s) 16
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 529
BssECI CCNNGG 1 cut(s) 37
BssMI GATC 2 cut(s) 127, 378
BssNI GRCGYC 1 cut(s) 530
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 3 cut(s) 224, 309, 625
BstACI GRCGYC 1 cut(s) 530
BstDSI CCRYGG 1 cut(s) 37
BstEII GGTNACC 1 cut(s) 28
BstF5I GGATG 1 cut(s) 231
BstH2I RGCGCY 2 cut(s) 517, 533
BstHHI GCGC 3 cut(s) 25, 516, 532
BstKTI GATC 2 cut(s) 130, 381
BstMBI GATC 2 cut(s) 127, 378
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 87
BstPI GGTNACC 1 cut(s) 28
BstSCI CCNGG 1 cut(s) 117
BstV1I GCAGC 2 cut(s) 400, 595
BtgI CCRYGG 1 cut(s) 37
BtsCI GGATG 1 cut(s) 231
BveI ACCTGC 1 cut(s) 16
CfoI GCGC 3 cut(s) 25, 516, 532
CseI GACGC 1 cut(s) 382
CsiI ACCWGGT 1 cut(s) 117
CviAII CATG 3 cut(s) 84, 235, 469
CviJI RGCY 6 cut(s) 57, 212, 395, 413, 480, 602
CviKI_1 RGCY 6 cut(s) 57, 212, 395, 413, 480, 602
DinI GGCGCC 1 cut(s) 531
DpnI GATC 2 cut(s) 129, 380
DpnII GATC 2 cut(s) 127, 378
DraIII CACNNNGTG 1 cut(s) 121
Eam1104I CTCTTC 3 cut(s) 224, 309, 625
EarI CTCTTC 3 cut(s) 224, 309, 625
Eco57I CTGAAG 1 cut(s) 116
Eco91I GGTNACC 1 cut(s) 28
EcoO65I GGTNACC 1 cut(s) 28
EcoRII CCWGG 1 cut(s) 117
EcoT22I ATGCAT 1 cut(s) 166
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
FaeI CATG 3 cut(s) 87, 238, 472
FatI CATG 3 cut(s) 83, 234, 468
FauI CCCGC 1 cut(s) 579
Fnu4HI GCNGC 3 cut(s) 393, 414, 584
FokI GGATG 1 cut(s) 238
Fsp4HI GCNGC 3 cut(s) 393, 414, 584
FspBI CTAG 1 cut(s) 603
GlaI GCGC 3 cut(s) 24, 515, 531
GluI GCNGC 3 cut(s) 393, 414, 584
GsaI CCCAGC 1 cut(s) 399
HaeII RGCGCY 2 cut(s) 517, 533
HgaI GACGC 1 cut(s) 382
HhaI GCGC 3 cut(s) 25, 516, 532
Hin1I GRCGYC 1 cut(s) 530
Hin1II CATG 3 cut(s) 87, 238, 472
Hin6I GCGC 3 cut(s) 23, 514, 530
HinP1I GCGC 3 cut(s) 23, 514, 530
HinfI GANTC 1 cut(s) 193
HphI GGTGA 3 cut(s) 323, 443, 506
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 1 cut(s) 302
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4IV ACGT 2 cut(s) 60, 483
HpyCH4V TGCA 5 cut(s) 4, 164, 182, 322, 509
HpySE526I ACGT 2 cut(s) 60, 483
Hsp92I GRCGYC 1 cut(s) 530
Hsp92II CATG 3 cut(s) 87, 238, 472
HspAI GCGC 3 cut(s) 23, 514, 530
KasI GGCGCC 1 cut(s) 529
Kzo9I GATC 2 cut(s) 127, 378
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 2 cut(s) 400, 595
LweI GCATC 1 cut(s) 612
MabI ACCWGGT 1 cut(s) 117
MaeI CTAG 1 cut(s) 603
MaeII ACGT 2 cut(s) 60, 483
MaeIII GTNAC 4 cut(s) 28, 61, 76, 595
MalI GATC 2 cut(s) 129, 380
MboI GATC 2 cut(s) 127, 378
MboII GAAGA 3 cut(s) 241, 326, 642
MluCI AATT 5 cut(s) 71, 132, 145, 250, 405
Mly113I GGCGCC 1 cut(s) 530
MlyI GAGTC 1 cut(s) 202
MnlI CCTC 4 cut(s) 44, 167, 196, 310
Mph1103I ATGCAT 1 cut(s) 166
MseI TTAA 2 cut(s) 276, 474
MspA1I CMGCKG 1 cut(s) 586
MspR9I CCNGG 1 cut(s) 119
Mva1269I GAATGC 1 cut(s) 166
MvaI CCWGG 1 cut(s) 119
NarI GGCGCC 1 cut(s) 530
NdeII GATC 2 cut(s) 127, 378
NlaIII CATG 3 cut(s) 87, 238, 472
NlaIV GGNNCC 1 cut(s) 531
NmeAIII GCCGAG 1 cut(s) 651
NmuCI GTSAC 1 cut(s) 76
NsiI ATGCAT 1 cut(s) 166
NspI RCATGY 1 cut(s) 87
PciSI GCTCTTC 1 cut(s) 224
PctI GAATGC 1 cut(s) 166
PkrI GCNGC 3 cut(s) 394, 415, 585
PleI GAGTC 1 cut(s) 201
PluTI GGCGCC 1 cut(s) 533
PpsI GAGTC 1 cut(s) 201
PshBI ATTAAT 1 cut(s) 474
PsiI TTATAA 1 cut(s) 420
Psp6I CCWGG 1 cut(s) 117
PspEI GGTNACC 1 cut(s) 28
PspFI CCCAGC 1 cut(s) 395
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 1 cut(s) 531
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 2 cut(s) 276, 474
SatI GCNGC 3 cut(s) 393, 414, 584
Sau3AI GATC 2 cut(s) 127, 378
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 119
SexAI ACCWGGT 1 cut(s) 117
SfaNI GCATC 1 cut(s) 612
SfoI GGCGCC 1 cut(s) 531
Sse9I AATT 5 cut(s) 71, 132, 145, 250, 405
SsiI CCGC 3 cut(s) 89, 392, 586
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 1 cut(s) 603
StyD4I CCNGG 1 cut(s) 117
TaaI ACNGT 1 cut(s) 41
TaiI ACGT 2 cut(s) 63, 486
TaqI TCGA 2 cut(s) 126, 381
TasI AATT 5 cut(s) 71, 132, 145, 250, 405
TauI GCSGC 1 cut(s) 395
Tru1I TTAA 2 cut(s) 276, 474
Tru9I TTAA 2 cut(s) 276, 474
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 2 cut(s) 413, 583
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 242
VspI ATTAAT 1 cut(s) 474
XapI RAATTY 2 cut(s) 132, 145
XceI RCATGY 1 cut(s) 87
XspI CTAG 1 cut(s) 603
Zsp2I ATGCAT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.