Rh4DG339800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0021287
Physical Location & Seq
Reverse (-)
56227211 .. 56239108
11898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG339800.1

Sequence Viewer

Length: 477 bp
ATGGGTTATGCCCGCCAGGTGTTCGATCAAATTCCTGAACCAAATTTTGCTCTATGGAATGCATTGTTGAGAGGGTATGCAAAGAATGAGATTCATAGGGAGGTTGTAGCTTTGTTTGGTAGGATGAAGAGCATGGACATAATGCCGAATTGCTATACATTCCCCGTTGTGATCAAATGTTGTGGGAGATTGAGTAGGTTGGTAGAAGGTGAAGAGGTGCATTGTGTTGTGATAAAATGTGGGTTTAGAGCAAACCCCTTTGTGGGAACGACGCTGATCGAAATGTATGCGGCTGGGGGAGTAATTGGAGCTGCTTATAAGGTGTTTGCTACTGAAACGCGCCAATCCATCCCAACATGGCCAACCTCCTCCCCGCTACAGGCAAAGACCCATCAGCATCATCATCTCGTCGCAGCAAGACTACTACTTCAAGACAAGCGCAAGCTCATCAAAGAAATAGTCATACCCAGCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

9.35

Isoelectric Point (pI)

48.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 14 - 62 1.2e-09 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021287)

Species Orthologous Gene IDs
pyrus_communis pycom15g35110
rosa_multiflora Rmu_co8271389.1_g000001
rosa_samantha Rh4AG337300 Rh4CG360000 Rh4DG339800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 318
AccII CGCG 1 cut(s) 340
AciI CCGC 3 cut(s) 13, 290, 374
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 2 cut(s) 30, 43
AfiI CCNNNNNNNGG 3 cut(s) 262, 263, 379
AgsI TTSAA 1 cut(s) 431
AjnI CCWGG 1 cut(s) 15
AluBI AGCT 3 cut(s) 110, 311, 445
AluI AGCT 3 cut(s) 110, 311, 445
AoxI GGCC 1 cut(s) 359
ApeKI GCWGC 2 cut(s) 311, 413
ApoI RAATTY 2 cut(s) 30, 43
ArsI GACNNNNNNTTYG 2 cut(s) 444, 476
AspLEI GCGC 2 cut(s) 342, 441
AsuHPI GGTGA 1 cut(s) 221
BalI TGGCCA 1 cut(s) 361
BbvI GCAGC 2 cut(s) 298, 425
BccI CCATC 2 cut(s) 356, 399
BcgI CGANNNNNNTGC 2 cut(s) 269, 303
BciT130I CCWGG 1 cut(s) 17
BclI TGATCA 1 cut(s) 171
BfmI CTRYAG 1 cut(s) 377
BisI GCNGC 3 cut(s) 291, 312, 414
BlsI GCNGC 3 cut(s) 292, 313, 415
Bme1390I CCNGG 1 cut(s) 17
BmrFI CCNGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 406
BsaXI ACNNNNNCTCC 2 cut(s) 178, 208
Bsc4I CCNNNNNNNGG 3 cut(s) 262, 263, 379
Bse1I ACTGG 1 cut(s) 472
BseBI CCWGG 1 cut(s) 17
BseGI GGATG 2 cut(s) 129, 348
BseLI CCNNNNNNNGG 3 cut(s) 262, 263, 379
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 1 cut(s) 358
BseXI GCAGC 2 cut(s) 298, 425
BseYI CCCAGC 2 cut(s) 293, 467
Bsh1236I CGCG 1 cut(s) 340
BshFI GGCC 1 cut(s) 361
BslI CCNNNNNNNGG 3 cut(s) 262, 263, 379
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 361
Bsp143I GATC 3 cut(s) 25, 171, 276
BspACI CCGC 3 cut(s) 13, 290, 374
BspANI GGCC 1 cut(s) 361
BspFNI CGCG 1 cut(s) 340
BspQI GCTCTTC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 472
BssMI GATC 3 cut(s) 25, 171, 276
Bst2UI CCWGG 1 cut(s) 17
Bst6I CTCTTC 2 cut(s) 122, 207
BstC8I GCNNGC 2 cut(s) 13, 443
BstF5I GGATG 2 cut(s) 129, 348
BstFNI CGCG 1 cut(s) 340
BstHHI GCGC 2 cut(s) 342, 441
BstKTI GATC 3 cut(s) 28, 174, 279
BstMBI GATC 3 cut(s) 25, 171, 276
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstSFI CTRYAG 1 cut(s) 377
BstUI CGCG 1 cut(s) 340
BstV1I GCAGC 2 cut(s) 298, 425
BsuRI GGCC 1 cut(s) 361
BtsCI GGATG 2 cut(s) 129, 348
Cac8I GCNNGC 2 cut(s) 13, 443
CfoI GCGC 2 cut(s) 342, 441
CseI GACGC 1 cut(s) 280
CspCI CAANNNNNGTGG 2 cut(s) 163, 198
CviAII CATG 2 cut(s) 133, 357
CviJI RGCY 6 cut(s) 110, 293, 311, 361, 445, 471
CviKI_1 RGCY 6 cut(s) 110, 293, 311, 361, 445, 471
DpnI GATC 3 cut(s) 27, 173, 278
DpnII GATC 3 cut(s) 25, 171, 276
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 122, 207
EarI CTCTTC 2 cut(s) 122, 207
EcoRII CCWGG 1 cut(s) 15
EcoT22I ATGCAT 1 cut(s) 64
FaeI CATG 2 cut(s) 136, 360
FatI CATG 2 cut(s) 132, 356
FauI CCCGC 2 cut(s) 20, 381
FbaI TGATCA 1 cut(s) 171
Fnu4HI GCNGC 3 cut(s) 291, 312, 414
FokI GGATG 2 cut(s) 136, 335
Fsp4HI GCNGC 3 cut(s) 291, 312, 414
GlaI GCGC 2 cut(s) 341, 440
GluI GCNGC 3 cut(s) 291, 312, 414
GsaI CCCAGC 2 cut(s) 297, 471
HaeIII GGCC 1 cut(s) 361
HgaI GACGC 1 cut(s) 280
HhaI GCGC 2 cut(s) 342, 441
Hin1II CATG 2 cut(s) 136, 360
Hin6I GCGC 2 cut(s) 340, 439
HinP1I GCGC 2 cut(s) 340, 439
HinfI GANTC 1 cut(s) 91
HphI GGTGA 1 cut(s) 221
Hpy188III TCNNGA 2 cut(s) 35, 431
Hpy99I CGWCG 2 cut(s) 274, 413
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 62, 80, 220
Hsp92II CATG 2 cut(s) 136, 360
HspAI GCGC 2 cut(s) 340, 439
Ksp22I TGATCA 1 cut(s) 171
Kzo9I GATC 3 cut(s) 25, 171, 276
LguI GCTCTTC 1 cut(s) 122
LmnI GCTCC 1 cut(s) 308
LpnPI CCDG 5 cut(s) 2, 29, 48, 279, 365
Lsp1109I GCAGC 2 cut(s) 298, 425
LweI GCATC 1 cut(s) 406
MalI GATC 3 cut(s) 27, 173, 278
MboI GATC 3 cut(s) 25, 171, 276
MboII GAAGA 2 cut(s) 139, 224
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 4 cut(s) 30, 43, 148, 303
MluNI TGGCCA 1 cut(s) 361
MnlI CCTC 5 cut(s) 65, 94, 208, 376, 379
Mox20I TGGCCA 1 cut(s) 361
Mph1103I ATGCAT 1 cut(s) 64
MscI TGGCCA 1 cut(s) 361
Msp20I TGGCCA 1 cut(s) 361
MspR9I CCNGG 1 cut(s) 17
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 17
MvnI CGCG 1 cut(s) 340
NdeII GATC 3 cut(s) 25, 171, 276
NlaIII CATG 2 cut(s) 136, 360
NsiI ATGCAT 1 cut(s) 64
PciSI GCTCTTC 1 cut(s) 122
PctI GAATGC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 3 cut(s) 292, 313, 415
PsiI TTATAA 1 cut(s) 318
Psp6I CCWGG 1 cut(s) 15
PspFI CCCAGC 2 cut(s) 293, 467
PspGI CCWGG 1 cut(s) 15
SapI GCTCTTC 1 cut(s) 122
SatI GCNGC 3 cut(s) 291, 312, 414
Sau3AI GATC 3 cut(s) 25, 171, 276
ScrFI CCNGG 1 cut(s) 17
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 1 cut(s) 377
Sse9I AATT 4 cut(s) 30, 43, 148, 303
SsiI CCGC 3 cut(s) 13, 290, 374
StyD4I CCNGG 1 cut(s) 15
TaqI TCGA 2 cut(s) 24, 279
TasI AATT 4 cut(s) 30, 43, 148, 303
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 1 cut(s) 91
TseI GCWGC 2 cut(s) 311, 413
TspDTI ATGAA 2 cut(s) 83, 140
XapI RAATTY 2 cut(s) 30, 43
Zsp2I ATGCAT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.