Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8278789.1

Orthogroup ID

OG0007943

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 799

Gene Structure 798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8278789.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 703 bp

atgcttgtaaaggagattaagttgtcaaaggcaaagaggaagcaagctgaacttgaaacagaacgatggaaagtagtatctgagtctaaacatgagaggcactcattgagaagtatgttggcgaaagcgaatttgaggtttgaggttgctttaaatgaacgagtcatgaatactagtgcaacaggtacatctcatcttgggtatgaaagtcctgagtttagaaatgagtctgttgagtactctttcgaggaaaatgtcgacttagctgacatgaagcagttggaaggttgggttagctcagaggcagagaggtatgcagcagtaattgagcagaggcatcacctagaaatagatgcttttatagaacagttaagaattaaagatgagaaactagagacttacagatggcgcttgttgagcatggaaatagagtcaaagaggttagactcccatcttgagggactgaataaggatatctcacaactcagacataacaacatgaaattggaagccttgttatcagagcgagaagaagaatcaacttccctaaaagagcagtttgcatcacagttgaggtttctacattcccagatgaacaactttaggagaaaagctgaggagcaaagtcagaaaacagaaacaagtttggttgaactatctcaggaggaagacgctaagaaagaagatgaaacctcatcttata

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04530 map04530

Pfam Domains

Protein Families

No domains found.

Protein Analysis

234

Amino Acids

27.6

Weight (kDa)

5.45

Isoelectric Point (pI)

66.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020 AT5G53020
fragaria_vesca	FvH4_7g31370
malus_domestica	MD07G1287000.v1.1
prunus_persica	Prupe.2G309100_v2.0.a1
pyrus_communis	pycom07g26030
rosa_chinensis	RchiOBHm_Chr1g0380441
rosa_laevigata	RLG00000026300
rosa_multiflora	Rmu_co8278789.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279360
rosa_rugosa	Rorug01G0421100
rosa_samantha	Rh1AG445500 Rh1BG400800 Rh1CG415200 Rh1DG430900
rosa_wichuraiana	Rw1G038770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	258
AcsI	RAATTY	1 cut(s)	130
AfaI	GTAC	2 cut(s)	187, 239
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	56, 653
AhlI	ACTAGT	1 cut(s)	173
AluBI	AGCT	4 cut(s)	47, 266, 297, 614
AluI	AGCT	4 cut(s)	47, 266, 297, 614
Alw26I	GTCTC	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	411
AsuHPI	GGTGA	1 cut(s)	332
BbsI	GAAGAC	1 cut(s)	675
BbvCI	CCTCAGC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	3 cut(s)	60, 399, 459
BcoDI	GTCTC	1 cut(s)	389
BcuI	ACTAGT	1 cut(s)	173
BfaI	CTAG	3 cut(s)	174, 344, 392
BfoI	RGCGCY	1 cut(s)	412
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
BmcAI	AGTACT	1 cut(s)	239
BmsI	GCATC	3 cut(s)	343, 346, 572
BpiI	GAAGAC	1 cut(s)	675
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu10I	CCTNAGC	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	476
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMII	CTCAG	6 cut(s)	72, 204, 312, 499, 606, 674
BseRI	GAGGAG	1 cut(s)	632
BseXI	GCAGC	1 cut(s)	329
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	389
BsmFI	GGGAC	1 cut(s)	474
BspCNI	CTCAG	6 cut(s)	73, 205, 311, 498, 607, 673
BspHI	TCATGA	1 cut(s)	165
Bst4CI	ACNGT	2 cut(s)	369, 570
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	8 cut(s)	81, 213, 262, 298, 485, 615, 660, 675
BstH2I	RGCGCY	1 cut(s)	412
BstHHI	GCGC	1 cut(s)	411
BstMAI	GTCTC	1 cut(s)	389
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstV1I	GCAGC	1 cut(s)	329
BstV2I	GAAGAC	1 cut(s)	675
Cac8I	GCNNGC	1 cut(s)	45
CciI	TCATGA	1 cut(s)	165
CfoI	GCGC	1 cut(s)	411
CseI	GACGC	1 cut(s)	680
Csp6I	GTAC	2 cut(s)	186, 238
CviAII	CATG	5 cut(s)	92, 166, 271, 421, 499
CviJI	RGCY	5 cut(s)	47, 266, 297, 512, 614
CviKI_1	RGCY	5 cut(s)	47, 266, 297, 512, 614
CviQI	GTAC	2 cut(s)	186, 238
DdeI	CTNAG	8 cut(s)	81, 213, 262, 298, 485, 615, 660, 675
DraI	TTTAAA	1 cut(s)	153
Eco32I	GATATC	1 cut(s)	475
EcoRV	GATATC	1 cut(s)	475
FaeI	CATG	5 cut(s)	95, 169, 274, 424, 502
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	5 cut(s)	91, 165, 270, 420, 498
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
FspBI	CTAG	3 cut(s)	174, 344, 392
GlaI	GCGC	1 cut(s)	410
GluI	GCNGC	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	412
HgaI	GACGC	1 cut(s)	680
HhaI	GCGC	1 cut(s)	411
Hin1II	CATG	5 cut(s)	95, 169, 274, 424, 502
Hin6I	GCGC	1 cut(s)	409
HinP1I	GCGC	1 cut(s)	409
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	6 cut(s)	83, 162, 227, 431, 446, 536
HphI	GGTGA	1 cut(s)	332
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	5 cut(s)	82, 301, 488, 523, 630
Hpy188III	TCNNGA	4 cut(s)	166, 212, 455, 662
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	369, 570
HpyCH4V	TGCA	3 cut(s)	179, 317, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	8 cut(s)	81, 213, 262, 298, 485, 615, 660, 675
Hsp92II	CATG	5 cut(s)	95, 169, 274, 424, 502
HspAI	GCGC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	619
LpnPI	CCDG	4 cut(s)	168, 225, 602, 647
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	3 cut(s)	343, 346, 572
MaeI	CTAG	3 cut(s)	174, 344, 392
MboII	GAAGA	4 cut(s)	542, 545, 680, 695
MluCI	AATT	4 cut(s)	130, 324, 375, 503
MlyI	GAGTC	5 cut(s)	92, 171, 236, 440, 440
MmeI	TCCRAC	1 cut(s)	261
MseI	TTAA	4 cut(s)	18, 152, 371, 378
MwoI	GCNNNNNNNGC	1 cut(s)	417
NlaIII	CATG	5 cut(s)	95, 169, 274, 424, 502
PagI	TCATGA	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	536
PkrI	GCNGC	1 cut(s)	319
PleI	GAGTC	5 cut(s)	91, 170, 235, 439, 440
PpsI	GAGTC	5 cut(s)	91, 170, 235, 439, 440
RsaI	GTAC	2 cut(s)	187, 239
RsaNI	GTAC	2 cut(s)	186, 238
SalI	GTCGAC	1 cut(s)	257
SaqAI	TTAA	4 cut(s)	18, 152, 371, 378
SatI	GCNGC	1 cut(s)	318
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	5 cut(s)	92, 171, 236, 440, 440
SfaNI	GCATC	3 cut(s)	343, 346, 572
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
SpeI	ACTAGT	1 cut(s)	173
Sse9I	AATT	4 cut(s)	130, 324, 375, 503
SspMI	CTAG	3 cut(s)	174, 344, 392
TaaI	ACNGT	2 cut(s)	369, 570
TaqI	TCGA	2 cut(s)	246, 258
TasI	AATT	4 cut(s)	130, 324, 375, 503
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	536
Tru1I	TTAA	4 cut(s)	18, 152, 371, 378
Tru9I	TTAA	4 cut(s)	18, 152, 371, 378
TseI	GCWGC	1 cut(s)	317
TspDTI	ATGAA	7 cut(s)	171, 182, 219, 287, 515, 608, 702
XapI	RAATTY	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	258
XspI	CTAG	3 cut(s)	174, 344, 392
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.