Rw1G038770

No description available

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
Physical Location & Seq
Reverse (-)
66291183 .. 66293879
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G038770.1

Sequence Viewer

Length: 2238 bp
ATGGAAGAGAGAGTGGTGGCGAATTCATATTTGATTGTTTCTGAAGATAAGAGTGATAGCTTGTATCCTACATACTTTGGTATTTCTTGTGCATTCTTTGCTCTACGGCTCCTGTCAATATCTGATGTGCAAGATGAGAGGTTGTCTGAAGTGCGTGATAAGATGCTTCGAGGGAGTGCCCAACTATTGGGATTGCTGATGTGGAGAGTTCAGAAAGAAGGAAGAGGTGGGAAAGAATGTGAGCTTCTCCATAAGCTTGAAATTGCTGAAAGAGAGATTAGAGAGTTGAAGAGACTGAGGCATGAAGACGCAAAGGCGAACGAGAAAGTTGTGAGCATCTTTGCTGCACAGGAGCAGAGTTGGTTGAACGAAAGGAAGAAACTGAGGCAGCACATTGGAGCTTTAATGAAATTAGAAGAAAAGCTAACAGAGGCTGAAAATGTGGCTGAAGAATTGAGAGAAAAGGCAAAGAGTGAGGCTCAGCAGCATTCTTCTGAAATTTTGAAGCACAGAACTGCATTCATTGAGCTTGTGTCAAACCAAAGGCAGCTGGATGCTGATATGGGCCGAGCACTTAGGCAAGTCGAAGCTACTAAACGGGAGTTTAATTTAGTCTTGGATCAAAAGGAGGAGTCAGTTTTGATGGTCCAAAAACTATCTGCGGAGATTGTAAAGATGCACAAGGATTTGGAACAGAAAGACAAGATTTTATCAGCAATGCTGAGGAAATCAAAGTTGGACATATCAGAGAAGCAAATGCTTGTAAAGGAGATTAAGTTGTCAAAGGCAAAGAGGAAGCAAGCTGAACTTGAAACAGAACGATGGAAAGTAGTATCTGAGTCTAAACATGAGAGGCACTCATTGAGAAGTATGTTGGCGAAAGCGAATTTGAGGTTTGAGGTTGCTTTAAATGAACGAGTCATGAATACTAGTGCAACAGGTACATCTCATCTTGGGTATGAAAGTCCTGAGTTTAGAAATGAGTCTGTTGAGTACTCTTTCGAGGAAAATGTCGACTTAGCTGACATGAAGCAGTTGGAAGGTTGGGTTAGCTCAGAGGCAGAGAGGTATGCAGCAGTAATTGAGCAGAGGCATCACCTAGAAATAGATGCTTTTATAGAACAGTTAAGAATTAAAGATGAGAAACTAGAGACTTACAGATGGCGCTTGTTGAGCATGGAAATAGAGTCAAAGAGGTTAGACTCCCATCTTGAGGGACTGAATAAGGATATCTCACAACTCAGACATAACAACATGAAATTGGAAGCCTTGTTATCAGAGCGAGAAGAAGAATCAACTTCCCTAAAAGAGCAGTTTGCATCACAGTTGAGGTTTCTACATTCCCAGATGAACAACTTTAGGAGAAAAGCTGAGGAGCAAAGTCAGAAAACAGAAACAAGTTTGGTTGAACTATCTCAGGAGGAAGACGCTAAGAAAGAAGATGAAACCTCATCTTATATAGAGTCTAACGATCAAACGTTGAAGGTACAATCTCCTGACAAAGATTTTGAAATTGAGAAGAATGTTTTGCATGAGGGTACAAGTCAAGAGGGAAGTGAAACTTGTGCAAGTCCTGTGGAAGTTATTGGTGCCGAAAAGTGGGTGATTGCATCACCAAGCCAGGCCTCAAGTACAAATAATAATTCACTGTGGAGGATGGATCTCCAAGCTCTGGGAGTGTCCTACAAGATCAAGAGGCTGAAGCAACAACTTCTTATGCTGGAAAGATTTACAGGAAAGCATGATAACAGCGCAGATCACAAGGAAGGCAATGATGATGGAAAAAGTGGGATGAAAGATTATCTTTTGCTAATGTCTTTGTTGAACAAACAAGTTGGACGGTACCAATCCCTCCAAGGGAAAGTTGACGACCTCTGCCAACGGATGCATGAGAATGATCTAGATGGAAATGGGAGACGCGGAGATTCTGATGTTGCAAGAACAAAGGACAAGTCTAAAACACTAGAGCACTTTCTTGATGAAACATTTCAGTTGCAGAGATATATGGTTGCCACAGGCCAGAGACTAATGGAAATCCTACCCAAGATTGCTTCTGGAATTGTTGGGATTGCTGTAGAGCTAGAAAAGTGCCCAAGCTTTGACATGAATCGCTTCACCGAGTTTATCAGGACTCTCTTCCAGGAAGTTCAAAGAGGTTTGGAAGTTCGAATAGCTCGAATGATTGGAGATCTTGAAGGCACTTTGGCTTGTGATGGAATGATACACTTGAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families
No domains found.

Protein Analysis

745

Amino Acids

86.08

Weight (kDa)

5.88

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1842
AccB1I GGYRCC 2 cut(s) 1589, 1842
AccB7I CCANNNNNTGG 2 cut(s) 187, 1672
AccI GTMKAC 1 cut(s) 1014
AccII CGCG 1 cut(s) 1920
AciI CCGC 2 cut(s) 662, 1920
AclI AACGTT 1 cut(s) 1478
AclWI GGATC 2 cut(s) 627, 1668
AcsI RAATTY 3 cut(s) 22, 498, 886
AcuI CTGAAG 4 cut(s) 63, 168, 468, 1721
AfaI GTAC 6 cut(s) 943, 995, 1488, 1540, 1633, 1844
AfiI CCNNNNNNNGG 5 cut(s) 187, 1213, 1599, 1672, 1857
AhlI ACTAGT 1 cut(s) 929
AjnI CCWGG 2 cut(s) 1620, 2139
AjuI GAANNNNNNNTTGG 2 cut(s) 719, 751
Alw21I GWGCWC 2 cut(s) 574, 1971
Alw26I GTCTC 4 cut(s) 286, 1145, 1909, 2017
AlwI GGATC 2 cut(s) 627, 1668
AlwNI CAGNNNCTG 1 cut(s) 434
AoxI GGCC 3 cut(s) 565, 1623, 2017
ApeKI GCWGC 5 cut(s) 344, 388, 484, 547, 1073
ApoI RAATTY 3 cut(s) 22, 498, 886
ArsI GACNNNNNNTTYG 4 cut(s) 1490, 1522, 1937, 1969
Asp700I GAANNNNTTC 2 cut(s) 1986, 2111
Asp718I GGTACC 1 cut(s) 1842
AspLEI GCGC 2 cut(s) 1167, 1754
AspS9I GGNCC 2 cut(s) 565, 646
AsuHPI GGTGA 4 cut(s) 1088, 1605, 1615, 2107
AsuII TTCGAA 1 cut(s) 2167
AvaII GGWCC 1 cut(s) 646
BaeGI GKGCMC 2 cut(s) 181, 2093
BanI GGYRCC 2 cut(s) 1589, 1842
BbsI GAAGAC 2 cut(s) 312, 1431
Bbv12I GWGCWC 2 cut(s) 574, 1971
BbvCI CCTCAGC 2 cut(s) 722, 1371
BbvI GCAGC 5 cut(s) 331, 400, 496, 559, 1085
BccI CCATC 8 cut(s) 637, 816, 1155, 1215, 1651, 1772, 1898, 2207
BceAI ACGGC 1 cut(s) 122
BciT130I CCWGG 2 cut(s) 1622, 2141
BciVI GTATCC 1 cut(s) 75
BcoDI GTCTC 4 cut(s) 286, 1145, 1909, 2017
BcuI ACTAGT 1 cut(s) 929
BfaI CTAG 6 cut(s) 930, 1100, 1148, 1901, 1964, 2081
BfmI CTRYAG 1 cut(s) 2073
BfoI RGCGCY 1 cut(s) 1168
BfuI GTATCC 1 cut(s) 75
BglII AGATCT 1 cut(s) 2188
BisI GCNGC 5 cut(s) 345, 389, 485, 548, 1074
BlpI GCTNAGC 1 cut(s) 480
BlsI GCNGC 5 cut(s) 346, 390, 486, 549, 1075
BmcAI AGTACT 1 cut(s) 995
Bme1390I CCNGG 2 cut(s) 1622, 2141
Bme18I GGWCC 1 cut(s) 646
BmgT120I GGNCC 2 cut(s) 565, 646
BmiI GGNNCC 3 cut(s) 110, 1591, 1844
BmrFI CCNGG 2 cut(s) 1622, 2141
BmsI GCATC 9 cut(s) 153, 345, 544, 666, 1099, 1102, 1328, 1619, 1875
BpiI GAAGAC 2 cut(s) 312, 1431
BplI GAGNNNNNCTC 4 cut(s) 463, 495, 842, 874
Bpu10I CCTNAGC 2 cut(s) 722, 1371
Bpu1102I GCTNAGC 1 cut(s) 480
Bpu14I TTCGAA 1 cut(s) 2167
BpuEI CTTGAG 2 cut(s) 1232, 1612
BsaJI CCNNGG 1 cut(s) 1855
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 5 cut(s) 187, 1213, 1599, 1672, 1857
Bse3DI GCAATG 2 cut(s) 723, 1777
BseBI CCWGG 2 cut(s) 1622, 2141
BseDI CCNNGG 1 cut(s) 1855
BseGI GGATG 4 cut(s) 559, 1662, 1797, 1890
BseLI CCNNNNNNNGG 5 cut(s) 187, 1213, 1599, 1672, 1857
BseMI GCAATG 2 cut(s) 723, 1777
BseRI GAGGAG 2 cut(s) 644, 1388
BseSI GKGCMC 2 cut(s) 181, 2093
BseXI GCAGC 5 cut(s) 331, 400, 496, 559, 1085
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 1920
BshFI GGCC 3 cut(s) 567, 1625, 2019
BshNI GGYRCC 2 cut(s) 1589, 1842
BsiHKAI GWGCWC 2 cut(s) 574, 1971
BslFI GGGAC 1 cut(s) 1230
BslI CCNNNNNNNGG 5 cut(s) 187, 1213, 1599, 1672, 1857
BsmAI GTCTC 4 cut(s) 286, 1145, 1909, 2017
BsmBI CGTCTC 1 cut(s) 1909
BsmFI GGGAC 1 cut(s) 1230
BsmI GAATGC 3 cut(s) 92, 487, 518
BsnI GGCC 3 cut(s) 567, 1625, 2019
Bsp119I TTCGAA 1 cut(s) 2167
Bsp1286I GDGCHC 4 cut(s) 181, 574, 1971, 2093
Bsp143I GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
Bsp1720I GCTNAGC 1 cut(s) 480
BspACI CCGC 2 cut(s) 662, 1920
BspANI GGCC 3 cut(s) 567, 1625, 2019
BspFNI CGCG 1 cut(s) 1920
BspHI TCATGA 1 cut(s) 921
BspLI GGNNCC 3 cut(s) 110, 1591, 1844
BspPI GGATC 2 cut(s) 627, 1668
BspT104I TTCGAA 1 cut(s) 2167
BspT107I GGYRCC 2 cut(s) 1589, 1842
BsrDI GCAATG 2 cut(s) 723, 1777
BssECI CCNNGG 1 cut(s) 1855
BssMI GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
BssT1I CCWWGG 1 cut(s) 1855
Bst2UI CCWGG 2 cut(s) 1622, 2141
Bst4CI ACNGT 4 cut(s) 1125, 1326, 1650, 1842
Bst6I CTCTTC 3 cut(s) 217, 284, 2141
BstAPI GCANNNNNTGC 1 cut(s) 98
BstBI TTCGAA 1 cut(s) 2167
BstC8I GCNNGC 1 cut(s) 801
BstF5I GGATG 4 cut(s) 559, 1662, 1797, 1890
BstFNI CGCG 1 cut(s) 1920
BstH2I RGCGCY 1 cut(s) 1168
BstHHI GCGC 2 cut(s) 1167, 1754
BstKTI GATC 7 cut(s) 622, 1474, 1663, 1692, 1759, 1900, 2191
BstMAI GTCTC 4 cut(s) 286, 1145, 1909, 2017
BstMBI GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
BstMWI GCNNNNNNNGC 2 cut(s) 98, 1173
BstNI CCWGG 2 cut(s) 1622, 2141
BstSCI CCNGG 2 cut(s) 1620, 2139
BstSFI CTRYAG 1 cut(s) 2073
BstSLI GKGCMC 2 cut(s) 181, 2093
BstUI CGCG 1 cut(s) 1920
BstV1I GCAGC 5 cut(s) 331, 400, 496, 559, 1085
BstV2I GAAGAC 2 cut(s) 312, 1431
BstX2I RGATCY 2 cut(s) 1660, 2188
BstYI RGATCY 2 cut(s) 1660, 2188
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 3 cut(s) 567, 1625, 2019
BtsCI GGATG 4 cut(s) 559, 1662, 1797, 1890
BtsIMutI CAGTG 1 cut(s) 1646
Cac8I GCNNGC 1 cut(s) 801
CaiI CAGNNNCTG 1 cut(s) 434
CciI TCATGA 1 cut(s) 921
CfoI GCGC 2 cut(s) 1167, 1754
Cfr13I GGNCC 2 cut(s) 565, 646
CseI GACGC 3 cut(s) 317, 1436, 1926
Csp6I GTAC 6 cut(s) 942, 994, 1487, 1539, 1632, 1843
CspCI CAANNNNNGTGG 2 cut(s) 1557, 1592
CviQI GTAC 6 cut(s) 942, 994, 1487, 1539, 1632, 1843
DpnI GATC 7 cut(s) 621, 1473, 1662, 1691, 1758, 1899, 2190
DpnII GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
DraI TTTAAA 1 cut(s) 909
Eam1104I CTCTTC 3 cut(s) 217, 284, 2141
EarI CTCTTC 3 cut(s) 217, 284, 2141
Eco130I CCWWGG 1 cut(s) 1855
Eco147I AGGCCT 1 cut(s) 1625
Eco32I GATATC 1 cut(s) 1231
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 4 cut(s) 63, 168, 468, 1721
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 2 cut(s) 1620, 2139
EcoRV GATATC 1 cut(s) 1231
EcoT14I CCWWGG 1 cut(s) 1855
EcoT22I ATGCAT 1 cut(s) 1890
ErhI CCWWGG 1 cut(s) 1855
Esp3I CGTCTC 1 cut(s) 1909
FalI AAGNNNNNCTT 6 cut(s) 792, 824, 1546, 1578, 1788, 1820
FaqI GGGAC 1 cut(s) 1230
FblI GTMKAC 1 cut(s) 1014
Fnu4HI GCNGC 5 cut(s) 345, 389, 485, 548, 1074
FokI GGATG 4 cut(s) 566, 1669, 1804, 1897
Fsp4HI GCNGC 5 cut(s) 345, 389, 485, 548, 1074
FspBI CTAG 6 cut(s) 930, 1100, 1148, 1901, 1964, 2081
GlaI GCGC 2 cut(s) 1166, 1753
GluI GCNGC 5 cut(s) 345, 389, 485, 548, 1074
HaeII RGCGCY 1 cut(s) 1168
HaeIII GGCC 3 cut(s) 567, 1625, 2019
HgaI GACGC 3 cut(s) 317, 1436, 1926
HhaI GCGC 2 cut(s) 1167, 1754
Hin6I GCGC 2 cut(s) 1165, 1752
HinP1I GCGC 2 cut(s) 1165, 1752
HincII GTYRAC 2 cut(s) 1015, 1867
HindII GTYRAC 2 cut(s) 1015, 1867
HindIII AAGCTT 2 cut(s) 254, 2095
HphI GGTGA 4 cut(s) 1088, 1605, 1615, 2107
Hpy166II GTNNAC 2 cut(s) 1015, 1867
Hpy8I GTNNAC 2 cut(s) 1015, 1867
HpyAV CCTTC 5 cut(s) 212, 1034, 1477, 1760, 2189
HpyCH4III ACNGT 4 cut(s) 1125, 1326, 1650, 1842
HpyCH4IV ACGT 1 cut(s) 1478
HpyF10VI GCNNNNNNNGC 2 cut(s) 98, 1173
HpySE526I ACGT 1 cut(s) 1478
HspAI GCGC 2 cut(s) 1165, 1752
KpnI GGTACC 1 cut(s) 1846
Kzo9I GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
LmnI GCTCC 4 cut(s) 114, 352, 398, 1375
Lsp1109I GCAGC 5 cut(s) 331, 400, 496, 559, 1085
LweI GCATC 9 cut(s) 153, 345, 544, 666, 1099, 1102, 1328, 1619, 1875
MaeI CTAG 6 cut(s) 930, 1100, 1148, 1901, 1964, 2081
MaeII ACGT 1 cut(s) 1478
MalI GATC 7 cut(s) 621, 1473, 1662, 1691, 1758, 1899, 2190
MboI GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
MflI RGATCY 2 cut(s) 1660, 2188
MhlI GDGCHC 4 cut(s) 181, 574, 1971, 2093
MlyI GAGTC 8 cut(s) 641, 848, 927, 992, 1196, 1196, 1472, 2125
MmeI TCCRAC 3 cut(s) 717, 1017, 1816
Mph1103I ATGCAT 1 cut(s) 1890
MroXI GAANNNNTTC 2 cut(s) 1986, 2111
MseI TTAA 6 cut(s) 404, 606, 774, 908, 1127, 1134
MslI CAYNNNNRTG 1 cut(s) 1893
MspA1I CMGCKG 1 cut(s) 550
MspR9I CCNGG 2 cut(s) 1622, 2141
Mva1269I GAATGC 3 cut(s) 92, 487, 518
MvaI CCWGG 2 cut(s) 1622, 2141
MvnI CGCG 1 cut(s) 1920
MwoI GCNNNNNNNGC 2 cut(s) 98, 1173
NdeII GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
NlaIV GGNNCC 3 cut(s) 110, 1591, 1844
NmeAIII GCCGAG 1 cut(s) 593
NsiI ATGCAT 1 cut(s) 1890
NspV TTCGAA 1 cut(s) 2167
PagI TCATGA 1 cut(s) 921
PceI AGGCCT 1 cut(s) 1625
PcsI WCGNNNNNNNCGW 1 cut(s) 2173
PctI GAATGC 3 cut(s) 92, 487, 518
PdmI GAANNNNTTC 2 cut(s) 1986, 2111
PfeI GAWTC 3 cut(s) 1292, 1925, 2107
PflMI CCANNNNNTGG 2 cut(s) 187, 1672
PfoI TCCNGGA 1 cut(s) 2139
PkrI GCNGC 5 cut(s) 346, 390, 486, 549, 1075
PleI GAGTC 8 cut(s) 640, 847, 926, 991, 1195, 1196, 1471, 2125
PpsI GAGTC 8 cut(s) 640, 847, 926, 991, 1195, 1196, 1471, 2125
Psp1406I AACGTT 1 cut(s) 1478
Psp6I CCWGG 2 cut(s) 1620, 2139
PspGI CCWGG 2 cut(s) 1620, 2139
PspN4I GGNNCC 3 cut(s) 110, 1591, 1844
PspPI GGNCC 2 cut(s) 565, 646
PstNI CAGNNNCTG 1 cut(s) 434
PsuI RGATCY 2 cut(s) 1660, 2188
PvuII CAGCTG 1 cut(s) 550
RsaI GTAC 6 cut(s) 943, 995, 1488, 1540, 1633, 1844
RsaNI GTAC 6 cut(s) 942, 994, 1487, 1539, 1632, 1843
RseI CAYNNNNRTG 1 cut(s) 1893
SalI GTCGAC 1 cut(s) 1013
SaqAI TTAA 6 cut(s) 404, 606, 774, 908, 1127, 1134
SatI GCNGC 5 cut(s) 345, 389, 485, 548, 1074
Sau3AI GATC 7 cut(s) 619, 1471, 1660, 1689, 1756, 1897, 2188
Sau96I GGNCC 2 cut(s) 565, 646
ScaI AGTACT 1 cut(s) 995
SchI GAGTC 8 cut(s) 641, 848, 927, 992, 1196, 1196, 1472, 2125
ScrFI CCNGG 2 cut(s) 1622, 2141
SduI GDGCHC 4 cut(s) 181, 574, 1971, 2093
SfaNI GCATC 9 cut(s) 153, 345, 544, 666, 1099, 1102, 1328, 1619, 1875
SfcI CTRYAG 1 cut(s) 2073
SfuI TTCGAA 1 cut(s) 2167
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 1893
SmlI CTYRAG 3 cut(s) 1211, 1627, 2227
SmoI CTYRAG 3 cut(s) 1211, 1627, 2227
SpeI ACTAGT 1 cut(s) 929
SseBI AGGCCT 1 cut(s) 1625
SsiI CCGC 2 cut(s) 662, 1920
SspMI CTAG 6 cut(s) 930, 1100, 1148, 1901, 1964, 2081
StuI AGGCCT 1 cut(s) 1625
StyD4I CCNGG 2 cut(s) 1620, 2139
StyI CCWWGG 1 cut(s) 1855
TaaI ACNGT 4 cut(s) 1125, 1326, 1650, 1842
TaiI ACGT 1 cut(s) 1481
TaqI TCGA 6 cut(s) 169, 585, 1002, 1014, 2167, 2176
TatI WGTACW 2 cut(s) 993, 1631
TfiI GAWTC 3 cut(s) 1292, 1925, 2107
Tru1I TTAA 6 cut(s) 404, 606, 774, 908, 1127, 1134
Tru9I TTAA 6 cut(s) 404, 606, 774, 908, 1127, 1134
TscAI CASTG 1 cut(s) 1653
TseI GCWGC 5 cut(s) 344, 388, 484, 547, 1073
TspGWI ACGGA 1 cut(s) 1897
TspRI CASTG 1 cut(s) 1653
Van91I CCANNNNNTGG 2 cut(s) 187, 1672
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 3 cut(s) 22, 498, 886
XbaI TCTAGA 1 cut(s) 1900
XmiI GTMKAC 1 cut(s) 1014
XmnI GAANNNNTTC 2 cut(s) 1986, 2111
XspI CTAG 6 cut(s) 930, 1100, 1148, 1901, 1964, 2081
ZrmI AGTACT 1 cut(s) 995
Zsp2I ATGCAT 1 cut(s) 1890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.