Rmu_co8298385.1_g000001

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8298385.1
OG0019393
Physical Location & Seq
Forward (+)
52 .. 888
837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8298385.1_g000001.1.cds

Sequence Viewer

Length: 837 bp
atgttcatcaaagcttgggctgccacttctcgacgtgccctcggagatcatcaagctgaaatcgagcctccacagtttgtttcagcaacattcttcccgccaaagatattcacacaacacaatgcaagctttagtatgagaaagaataaagtgacaacaaaaaggtttgtgtttgatgccgccaacattgaggacctcagagcaaaatatgtcgacctagacaaaccgttgatcaagcgcccctcgcgtgtcgagtccttatcggcttttctatggagccgaatagtggctgcttcgaaagatgatgatcatgttgacgacaagttgtatagagtgatgaatgttgtcaatcttcgtccactgttcaatccaccgttgccgcaatctgtgtttggaaacctcgtcgggatttccataacatctccaacatcctcgggggcagaatattcgagtggtttcatcaagcactcacgagagcaaataagcaacattaccgacgactacgtgaaaaaatttcatcagtgtgatgagcatttgggttttctggagagatatgctgatgtttataagagaggacagagtaccgtgacgtccatgttcagtagtatatgcaagtttcctctgtatgacagtgactttggttggggaagaccaacgtatgtgggcgttccggcgttcagcttcgcgaacacgatcattttcgtcgaccccaaagagggtggtggaatagaggtccacgtttgcttgagggaagaggtcatggttaaatttgaaagggaccccaagttgctctcacggctgggtttgagttcggttggttcgggttcaatcaaaaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

279

Amino Acids

31.44

Weight (kDa)

9.12

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019393)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0478851
rosa_laevigata RLG00000023620
rosa_multiflora Rmu_co8298385.1_g000001 Rmu_sc0004831.1_g000009 Rmu_sc0005751.1_g000007
rosa_roxburghii Rroxscaffold_6G00403020
rosa_rugosa Rorug03G0168700
rosa_wichuraiana Rw3G019810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 567
AatII GACGTC 1 cut(s) 593
AccI GTMKAC 2 cut(s) 213, 705
AccII CGCG 2 cut(s) 247, 686
AciI CCGC 3 cut(s) 98, 180, 380
AcsI RAATTY 2 cut(s) 512, 767
AcyI GRCGYC 1 cut(s) 590
AfaI GTAC 1 cut(s) 583
AfiI CCNNNNNNNGG 3 cut(s) 286, 715, 716
AgsI TTSAA 3 cut(s) 367, 773, 828
AjiI CACGTC 1 cut(s) 35
AluBI AGCT 4 cut(s) 14, 56, 129, 681
AluI AGCT 4 cut(s) 14, 56, 129, 681
Ama87I CYCGRG 1 cut(s) 433
ApeKI GCWGC 2 cut(s) 20, 290
ApoI RAATTY 2 cut(s) 512, 767
ArsI GACNNNNNNTTYG 2 cut(s) 620, 652
AspLEI GCGC 1 cut(s) 240
AspS9I GGNCC 3 cut(s) 193, 733, 778
AsuII TTCGAA 1 cut(s) 296
AvaI CYCGRG 1 cut(s) 433
AvaII GGWCC 3 cut(s) 193, 733, 778
BaeGI GKGCMC 1 cut(s) 40
BauI CACGAG 1 cut(s) 471
BbsI GAAGAC 1 cut(s) 655
BbvI GCAGC 2 cut(s) 7, 277
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 2 cut(s) 429, 463
BclI TGATCA 2 cut(s) 231, 307
BfaI CTAG 1 cut(s) 218
BfoI RGCGCY 1 cut(s) 241
BisI GCNGC 4 cut(s) 21, 180, 291, 380
BlsI GCNGC 4 cut(s) 22, 181, 292, 381
Bme18I GGWCC 3 cut(s) 193, 733, 778
BmeT110I CYCGRG 1 cut(s) 433
BmgBI CACGTC 1 cut(s) 35
BmgT120I GGNCC 3 cut(s) 193, 733, 778
BmiI GGNNCC 3 cut(s) 278, 779, 780
BmsI GCATC 1 cut(s) 166
BpiI GAAGAC 1 cut(s) 655
BpmI CTGGAG 1 cut(s) 566
Bpu14I TTCGAA 1 cut(s) 296
BpuEI CTTGAG 1 cut(s) 766
BsaAI YACGTR 1 cut(s) 505
BsaBI GATNNNNATC 1 cut(s) 306
BsaHI GRCGYC 1 cut(s) 590
BsaJI CCNNGG 2 cut(s) 40, 432
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 715, 716
Bse8I GATNNNNATC 1 cut(s) 306
BseDI CCNNGG 2 cut(s) 40, 432
BseGI GGATG 1 cut(s) 428
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 3 cut(s) 286, 715, 716
BseMII CTCAG 1 cut(s) 211
BseSI GKGCMC 1 cut(s) 40
BseXI GCAGC 2 cut(s) 7, 277
BseYI CCCAGC 1 cut(s) 799
Bsh1236I CGCG 2 cut(s) 247, 686
BsiHKCI CYCGRG 1 cut(s) 433
BsiSI CCGG 1 cut(s) 671
BslFI GGGAC 1 cut(s) 791
BslI CCNNNNNNNGG 3 cut(s) 286, 715, 716
BsmFI GGGAC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 433
Bsp119I TTCGAA 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 40
Bsp143I GATC 4 cut(s) 46, 231, 307, 693
Bsp68I TCGCGA 1 cut(s) 686
BspACI CCGC 3 cut(s) 98, 180, 380
BspCNI CTCAG 1 cut(s) 210
BspFNI CGCG 2 cut(s) 247, 686
BspLI GGNNCC 3 cut(s) 278, 779, 780
BspT104I TTCGAA 1 cut(s) 296
BssECI CCNNGG 2 cut(s) 40, 432
BssMI GATC 4 cut(s) 46, 231, 307, 693
BssNI GRCGYC 1 cut(s) 590
BssSI CACGAG 1 cut(s) 471
Bst2BI CACGAG 1 cut(s) 471
Bst4CI ACNGT 6 cut(s) 75, 228, 363, 375, 586, 632
Bst6I CTCTTC 1 cut(s) 747
BstACI GRCGYC 1 cut(s) 590
BstBAI YACGTR 1 cut(s) 505
BstBI TTCGAA 1 cut(s) 296
BstC8I GCNNGC 1 cut(s) 127
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 1 cut(s) 428
BstFNI CGCG 2 cut(s) 247, 686
BstH2I RGCGCY 1 cut(s) 241
BstHHI GCGC 1 cut(s) 240
BstKTI GATC 4 cut(s) 49, 234, 310, 696
BstMBI GATC 4 cut(s) 46, 231, 307, 693
BstMWI GCNNNNNNNGC 3 cut(s) 20, 244, 796
BstSLI GKGCMC 1 cut(s) 40
BstUI CGCG 2 cut(s) 247, 686
BstV1I GCAGC 2 cut(s) 7, 277
BstV2I GAAGAC 1 cut(s) 655
BtrI CACGTC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 3 cut(s) 359, 527, 637
BtuMI TCGCGA 1 cut(s) 686
Cac8I GCNNGC 1 cut(s) 127
CfoI GCGC 1 cut(s) 240
Cfr13I GGNCC 3 cut(s) 193, 733, 778
Csp6I GTAC 1 cut(s) 582
CspCI CAANNNNNGTGG 4 cut(s) 642, 677, 700, 735
CviAII CATG 3 cut(s) 311, 595, 760
CviQI GTAC 1 cut(s) 582
DdeI CTNAG 1 cut(s) 197
DpnI GATC 4 cut(s) 48, 233, 309, 695
DpnII GATC 4 cut(s) 46, 231, 307, 693
Eam1104I CTCTTC 1 cut(s) 747
EarI CTCTTC 1 cut(s) 747
Eco47I GGWCC 3 cut(s) 193, 733, 778
Eco88I CYCGRG 1 cut(s) 433
EcoO109I RGGNCCY 2 cut(s) 193, 778
FaeI CATG 3 cut(s) 314, 598, 763
FaqI GGGAC 1 cut(s) 791
FatI CATG 3 cut(s) 310, 594, 759
FauI CCCGC 1 cut(s) 105
FbaI TGATCA 2 cut(s) 231, 307
FblI GTMKAC 2 cut(s) 213, 705
Fnu4HI GCNGC 4 cut(s) 21, 180, 291, 380
FokI GGATG 1 cut(s) 415
Fsp4HI GCNGC 4 cut(s) 21, 180, 291, 380
FspBI CTAG 1 cut(s) 218
GlaI GCGC 1 cut(s) 239
GluI GCNGC 4 cut(s) 21, 180, 291, 380
GsaI CCCAGC 1 cut(s) 803
GsuI CTGGAG 1 cut(s) 566
HaeII RGCGCY 1 cut(s) 241
HapII CCGG 1 cut(s) 671
HhaI GCGC 1 cut(s) 240
Hin1I GRCGYC 1 cut(s) 590
Hin1II CATG 3 cut(s) 314, 598, 763
Hin6I GCGC 1 cut(s) 238
HinP1I GCGC 1 cut(s) 238
HincII GTYRAC 3 cut(s) 214, 316, 706
HindII GTYRAC 3 cut(s) 214, 316, 706
HindIII AAGCTT 2 cut(s) 12, 127
HinfI GANTC 1 cut(s) 254
HpaII CCGG 1 cut(s) 671
Hpy166II GTNNAC 5 cut(s) 214, 316, 359, 706, 736
Hpy188I TCNGA 2 cut(s) 44, 200
Hpy188III TCNNGA 5 cut(s) 30, 406, 471, 545, 685
Hpy8I GTNNAC 5 cut(s) 214, 316, 359, 706, 736
Hpy99I CGWCG 4 cut(s) 36, 407, 500, 707
HpyCH4III ACNGT 6 cut(s) 75, 228, 363, 375, 586, 632
HpyCH4IV ACGT 5 cut(s) 34, 504, 590, 656, 738
HpyCH4V TGCA 2 cut(s) 125, 612
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 244, 796
HpyF3I CTNAG 1 cut(s) 197
HpySE526I ACGT 5 cut(s) 34, 504, 590, 656, 738
Hsp92I GRCGYC 1 cut(s) 590
Hsp92II CATG 3 cut(s) 314, 598, 763
HspAI GCGC 1 cut(s) 238
KflI GGGWCCC 1 cut(s) 778
Ksp22I TGATCA 2 cut(s) 231, 307
Kzo9I GATC 4 cut(s) 46, 231, 307, 693
LmnI GCTCC 1 cut(s) 276
LpnPI CCDG 3 cut(s) 530, 684, 785
Lsp1109I GCAGC 2 cut(s) 7, 277
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 218
MaeII ACGT 5 cut(s) 34, 504, 590, 656, 738
MaeIII GTNAC 3 cut(s) 151, 586, 632
MalI GATC 4 cut(s) 48, 233, 309, 695
MboI GATC 4 cut(s) 46, 231, 307, 693
MboII GAAGA 4 cut(s) 85, 344, 660, 764
MhlI GDGCHC 1 cut(s) 40
MluCI AATT 2 cut(s) 512, 767
MlyI GAGTC 1 cut(s) 263
MmeI TCCRAC 1 cut(s) 449
MseI TTAA 1 cut(s) 765
MslI CAYNNNNRTG 1 cut(s) 522
MspI CCGG 1 cut(s) 671
MvnI CGCG 2 cut(s) 247, 686
MwoI GCNNNNNNNGC 3 cut(s) 20, 244, 796
NdeII GATC 4 cut(s) 46, 231, 307, 693
NlaIII CATG 3 cut(s) 314, 598, 763
NlaIV GGNNCC 3 cut(s) 278, 779, 780
NmuCI GTSAC 3 cut(s) 151, 586, 632
NruI TCGCGA 1 cut(s) 686
NspV TTCGAA 1 cut(s) 296
PkrI GCNGC 4 cut(s) 22, 181, 292, 381
PleI GAGTC 1 cut(s) 262
PpsI GAGTC 1 cut(s) 262
Ppu21I YACGTR 1 cut(s) 505
PpuMI RGGWCCY 2 cut(s) 193, 778
PsiI TTATAA 1 cut(s) 567
Psp5II RGGWCCY 2 cut(s) 193, 778
PspFI CCCAGC 1 cut(s) 799
PspN4I GGNNCC 3 cut(s) 278, 779, 780
PspPI GGNCC 3 cut(s) 193, 733, 778
PspPPI RGGWCCY 2 cut(s) 193, 778
RruI TCGCGA 1 cut(s) 686
RsaI GTAC 1 cut(s) 583
RsaNI GTAC 1 cut(s) 582
RseI CAYNNNNRTG 1 cut(s) 522
SalI GTCGAC 2 cut(s) 212, 704
SaqAI TTAA 1 cut(s) 765
SatI GCNGC 4 cut(s) 21, 180, 291, 380
Sau3AI GATC 4 cut(s) 46, 231, 307, 693
Sau96I GGNCC 3 cut(s) 193, 733, 778
SchI GAGTC 1 cut(s) 263
SduI GDGCHC 1 cut(s) 40
SfaNI GCATC 1 cut(s) 166
SfuI TTCGAA 1 cut(s) 296
SinI GGWCC 3 cut(s) 193, 733, 778
SmiMI CAYNNNNRTG 1 cut(s) 522
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 2 cut(s) 512, 767
SsiI CCGC 3 cut(s) 98, 180, 380
SspI AATATT 1 cut(s) 446
SspMI CTAG 1 cut(s) 218
TaaI ACNGT 6 cut(s) 75, 228, 363, 375, 586, 632
TaiI ACGT 5 cut(s) 37, 507, 593, 659, 741
TaqI TCGA 7 cut(s) 31, 63, 213, 252, 296, 449, 705
TasI AATT 2 cut(s) 512, 767
TauI GCSGC 2 cut(s) 182, 382
Tru1I TTAA 1 cut(s) 765
Tru9I TTAA 1 cut(s) 765
TscAI CASTG 3 cut(s) 366, 527, 637
TseFI GTSAC 3 cut(s) 151, 586, 632
TseI GCWGC 2 cut(s) 20, 290
Tsp45I GTSAC 3 cut(s) 151, 586, 632
TspDTI ATGAA 3 cut(s) 353, 448, 506
TspRI CASTG 3 cut(s) 366, 527, 637
VpaK11BI GGWCC 3 cut(s) 193, 733, 778
XapI RAATTY 2 cut(s) 512, 767
XmiI GTMKAC 2 cut(s) 213, 705
XspI CTAG 1 cut(s) 218
ZraI GACGTC 1 cut(s) 591
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.