Rmu_co8300283.1_g000001
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8300283.1
OG0018994
Physical Location & Seq
Reverse (-)
1 .. 296
296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8300283.1_g000001.1.cds

Sequence Viewer

Length: 289 bp
atgccttttactgcttttgagcaggctgttgcatcagaagtttactttcaaagaaatacttatgagcttgcaaatgctgctgagaagacagtgactcttcctcttgataagggttctgatgaaggagctgagaggctaatgatgatgagaggcatgacagcaaacaattttgaccccattagatattctggtaggtggtatgaagttgcttcacttaaacgtggatttgctgggcaaggtcaggaagactgtcattgcacccaggtaaatggaaatggtatgtctagtt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipocalin_2

Protein Analysis

96

Amino Acids

10.68

Weight (kDa)

5.02

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018994)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0496801
rosa_laevigata RLG00000022535
rosa_multiflora Rmu_co8300283.1_g000001
rosa_rugosa Rorug03G0327900 Rorug07G0164200
rosa_samantha Rh3AG331600 Rh4AG220100 Rh4BG332600 Rh4CG347900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 2 cut(s) 67, 128
AluI AGCT 2 cut(s) 67, 128
ApeKI GCWGC 1 cut(s) 77
BbsI GAAGAC 2 cut(s) 92, 252
BbvI GCAGC 1 cut(s) 64
BciT130I CCWGG 1 cut(s) 263
BfaI CTAG 1 cut(s) 285
BisI GCNGC 1 cut(s) 78
BlsI GCNGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 263
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 1 cut(s) 41
BpiI GAAGAC 2 cut(s) 92, 252
BsaJI CCNNGG 1 cut(s) 261
Bse3DI GCAATG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 261
BseMI GCAATG 1 cut(s) 253
BseMII CTCAG 2 cut(s) 72, 120
BseXI GCAGC 1 cut(s) 64
BseYI CCCAGC 1 cut(s) 230
BspCNI CTCAG 2 cut(s) 73, 121
BsrDI GCAATG 1 cut(s) 253
BssECI CCNNGG 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 263
Bst4CI ACNGT 2 cut(s) 91, 251
Bst6I CTCTTC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 24, 69
BstDEI CTNAG 2 cut(s) 81, 129
BstMWI GCNNNNNNNGC 1 cut(s) 77
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstV1I GCAGC 1 cut(s) 64
BstV2I GAAGAC 2 cut(s) 92, 252
BstXI CCANNNNNNTGG 1 cut(s) 269
BtsIMutI CAGTG 1 cut(s) 96
Cac8I GCNNGC 2 cut(s) 24, 69
CviAII CATG 1 cut(s) 154
CviJI RGCY 4 cut(s) 26, 67, 128, 136
CviKI_1 RGCY 4 cut(s) 26, 67, 128, 136
DdeI CTNAG 2 cut(s) 81, 129
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
EcoRII CCWGG 1 cut(s) 261
FaeI CATG 1 cut(s) 157
FaiI YATR 4 cut(s) 63, 155, 201, 281
FalI AAGNNNNNCTT 2 cut(s) 43, 75
FatI CATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 78
Fsp4HI GCNGC 1 cut(s) 78
FspBI CTAG 1 cut(s) 285
GluI GCNGC 1 cut(s) 78
GsaI CCCAGC 1 cut(s) 234
Hin1II CATG 1 cut(s) 157
HinfI GANTC 1 cut(s) 94
Hpy166II GTNNAC 1 cut(s) 43
Hpy188I TCNGA 2 cut(s) 37, 118
Hpy188III TCNNGA 2 cut(s) 104, 242
Hpy8I GTNNAC 1 cut(s) 43
HpyAV CCTTC 1 cut(s) 116
HpyCH4III ACNGT 2 cut(s) 91, 251
HpyCH4IV ACGT 1 cut(s) 220
HpyCH4V TGCA 3 cut(s) 32, 71, 258
HpyF10VI GCNNNNNNNGC 1 cut(s) 77
HpyF3I CTNAG 2 cut(s) 81, 129
HpySE526I ACGT 1 cut(s) 220
Hsp92II CATG 1 cut(s) 157
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 6 cut(s) 8, 174, 216, 227, 248, 275
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 41
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 220
MaeIII GTNAC 1 cut(s) 91
MboII GAAGA 3 cut(s) 89, 97, 257
MluCI AATT 1 cut(s) 166
MlyI GAGTC 1 cut(s) 88
MnlI CCTC 3 cut(s) 111, 126, 143
MseI TTAA 1 cut(s) 216
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 77
NlaIII CATG 1 cut(s) 157
NmuCI GTSAC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 79
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 230
PspGI CCWGG 1 cut(s) 261
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 1 cut(s) 78
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 1 cut(s) 263
SetI ASST 6 cut(s) 69, 130, 197, 223, 241, 267
SfaNI GCATC 1 cut(s) 41
Sse9I AATT 1 cut(s) 166
SspMI CTAG 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 91, 251
TaiI ACGT 1 cut(s) 223
TasI AATT 1 cut(s) 166
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 96
TseFI GTSAC 1 cut(s) 91
TseI GCWGC 1 cut(s) 77
Tsp45I GTSAC 1 cut(s) 91
TspDTI ATGAA 2 cut(s) 135, 216
TspRI CASTG 1 cut(s) 96
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.