Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018994

Physical Location & Seq

Genomic Coordinates Reverse (-)

60582160 .. 60587718

Gene Structure 5559 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG347900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGCCTTTTACTGCTTTTGAGCAGGCTGTTGCATCAGAAGTTTACTTTCAAAGAAATACTTATGAGCTTGCAAATGCTGCTGAGAAGACAGTGACTCTTCCTCTTGATAAGGGTTCTGATGAAGGAGCTGAGAGGCTAATGATGATGAGAGGCATGACAGCAAACAATTTTGACCCCATTAGATATTCTGGTAGGTGGTATGAAGTTGCTTCACTTAAACGTGGATTTGCTGGGCAAGGTCAGGAAGACTGTCATTGCACCCAGGTAAATGGAAATGAGGTTGACTATATCCACCATATTGTTCGAAAAGGGTCTCCAGAAGAGCAGCAGTTTCATCTTTCTGTCCCTGAAAAGAATGAGGTTAAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000302 GO:0001101 GO:0001817 GO:0001818 GO:0001952 GO:0001953 GO:0002682 GO:0002683 GO:0002685 GO:0002686 GO:0003006 GO:0003674 GO:0005488 GO:0005496 GO:0005575 GO:0005576 GO:0005615 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005975 GO:0005996 GO:0006006 GO:0006629 GO:0006950 GO:0006979 GO:0007162 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0007568 GO:0008150 GO:0008152 GO:0008285 GO:0008289 GO:0009266 GO:0009314 GO:0009408 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009611 GO:0009628 GO:0009635 GO:0009636 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009791 GO:0009888 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010154 GO:0010431 GO:0010565 GO:0010605 GO:0010640 GO:0010642 GO:0010646 GO:0010648 GO:0010810 GO:0010812 GO:0012505 GO:0014012 GO:0015485 GO:0016020 GO:0016043 GO:0019216 GO:0019217 GO:0019222 GO:0019318 GO:0021700 GO:0022008 GO:0022414 GO:0022626 GO:0023051 GO:0023057 GO:0030030 GO:0030154 GO:0030155 GO:0030182 GO:0030334 GO:0030336 GO:0030425 GO:0031099 GO:0031102 GO:0031103 GO:0031175 GO:0031323 GO:0031324 GO:0031347 GO:0031348 GO:0031976 GO:0031977 GO:0031984 GO:0032101 GO:0032102 GO:0032386 GO:0032387 GO:0032501 GO:0032502 GO:0032504 GO:0032642 GO:0032682 GO:0032879 GO:0032880 GO:0032934 GO:0032991 GO:0033157 GO:0033554 GO:0033993 GO:0034357 GO:0034442 GO:0034443 GO:0036094 GO:0036477 GO:0040007 GO:0040012 GO:0040013 GO:0042060 GO:0042127 GO:0042221 GO:0042246 GO:0042306 GO:0042308 GO:0042493 GO:0042651 GO:0042995 GO:0043005 GO:0043025 GO:0043178 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044087 GO:0044238 GO:0044281 GO:0044297 GO:0044421 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044445 GO:0044446 GO:0044463 GO:0044464 GO:0045833 GO:0045922 GO:0046320 GO:0046322 GO:0046822 GO:0046823 GO:0048316 GO:0048468 GO:0048471 GO:0048513 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048608 GO:0048609 GO:0048660 GO:0048662 GO:0048666 GO:0048678 GO:0048699 GO:0048731 GO:0048856 GO:0048869 GO:0050727 GO:0050728 GO:0050746 GO:0050748 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051223 GO:0051224 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051270 GO:0051271 GO:0051716 GO:0051893 GO:0051895 GO:0055035 GO:0060255 GO:0060322 GO:0060341 GO:0060587 GO:0060588 GO:0061458 GO:0061564 GO:0062012 GO:0062014 GO:0065007 GO:0070201 GO:0071637 GO:0071638 GO:0071695 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0090087 GO:0090109 GO:0090317 GO:0097159 GO:0097305 GO:0097447 GO:0097458 GO:0120025 GO:0120036 GO:0120038 GO:1900015 GO:1900016 GO:1900180 GO:1900181 GO:1901562 GO:1901700 GO:1901888 GO:1901889 GO:1903391 GO:1903392 GO:1903827 GO:1903828 GO:1904589 GO:1904590 GO:1904950 GO:1990904 GO:2000097 GO:2000098 GO:2000145 GO:2000146 GO:2000401 GO:2000402 GO:2000404 GO:2000405

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipocalin_2

Protein Analysis

123

Amino Acids

14.03

Weight (kDa)

5.55

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018994)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496801
rosa_laevigata	RLG00000022535
rosa_multiflora	Rmu_co8300283.1_g000001
rosa_rugosa	Rorug03G0327900 Rorug07G0164200
rosa_samantha	Rh3AG331600 Rh4AG220100 Rh4BG332600 Rh4CG347900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	2 cut(s)	67, 128
AluI	AGCT	2 cut(s)	67, 128
Alw26I	GTCTC	1 cut(s)	318
ApeKI	GCWGC	2 cut(s)	77, 325
AsuII	TTCGAA	1 cut(s)	304
BbsI	GAAGAC	2 cut(s)	92, 252
BbvI	GCAGC	2 cut(s)	64, 337
BciT130I	CCWGG	1 cut(s)	263
BcoDI	GTCTC	1 cut(s)	318
BisI	GCNGC	2 cut(s)	78, 326
BlsI	GCNGC	2 cut(s)	79, 327
Bme1390I	CCNGG	1 cut(s)	263
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	92, 252
BpmI	CTGGAG	1 cut(s)	300
Bpu14I	TTCGAA	1 cut(s)	304
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	261
Bse3DI	GCAATG	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	72, 120
BseXI	GCAGC	2 cut(s)	64, 337
BseYI	CCCAGC	1 cut(s)	230
BslFI	GGGAC	1 cut(s)	329
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	1 cut(s)	329
Bso31I	GGTCTC	1 cut(s)	318
Bsp119I	TTCGAA	1 cut(s)	304
BspCNI	CTCAG	2 cut(s)	73, 121
BspQI	GCTCTTC	1 cut(s)	315
BspT104I	TTCGAA	1 cut(s)	304
BspTNI	GGTCTC	1 cut(s)	318
BsrDI	GCAATG	1 cut(s)	253
BssECI	CCNNGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	91, 251
Bst6I	CTCTTC	2 cut(s)	102, 315
BstAPI	GCANNNNNTGC	1 cut(s)	77
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	2 cut(s)	24, 69
BstDEI	CTNAG	2 cut(s)	81, 129
BstMAI	GTCTC	1 cut(s)	318
BstMWI	GCNNNNNNNGC	1 cut(s)	77
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	261
BstV1I	GCAGC	2 cut(s)	64, 337
BstV2I	GAAGAC	2 cut(s)	92, 252
BstXI	CCANNNNNNTGG	1 cut(s)	269
BtsIMutI	CAGTG	1 cut(s)	96
Cac8I	GCNNGC	2 cut(s)	24, 69
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	4 cut(s)	26, 67, 128, 136
CviKI_1	RGCY	4 cut(s)	26, 67, 128, 136
DdeI	CTNAG	2 cut(s)	81, 129
Eam1104I	CTCTTC	2 cut(s)	102, 315
EarI	CTCTTC	2 cut(s)	102, 315
Eco31I	GGTCTC	1 cut(s)	318
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	157
FaiI	YATR	5 cut(s)	63, 155, 201, 288, 297
FalI	AAGNNNNNCTT	2 cut(s)	43, 75
FaqI	GGGAC	1 cut(s)	329
FatI	CATG	1 cut(s)	153
Fnu4HI	GCNGC	2 cut(s)	78, 326
Fsp4HI	GCNGC	2 cut(s)	78, 326
GluI	GCNGC	2 cut(s)	78, 326
GsaI	CCCAGC	1 cut(s)	234
GsuI	CTGGAG	1 cut(s)	300
Hin1II	CATG	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	94
Hpy166II	GTNNAC	2 cut(s)	43, 283
Hpy188I	TCNGA	2 cut(s)	37, 118
Hpy188III	TCNNGA	3 cut(s)	104, 242, 317
Hpy8I	GTNNAC	2 cut(s)	43, 283
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	91, 251
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	3 cut(s)	32, 71, 258
HpyF10VI	GCNNNNNNNGC	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	81, 129
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	157
LguI	GCTCTTC	1 cut(s)	315
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	8, 174, 216, 227, 248, 275, 330, 360
Lsp1109I	GCAGC	2 cut(s)	64, 337
LweI	GCATC	1 cut(s)	41
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	1 cut(s)	91
MboII	GAAGA	4 cut(s)	89, 97, 257, 332
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	111, 126, 143, 271, 352
MseI	TTAA	2 cut(s)	216, 363
MspR9I	CCNGG	1 cut(s)	263
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	77
NlaIII	CATG	1 cut(s)	157
NmuCI	GTSAC	1 cut(s)	91
NspV	TTCGAA	1 cut(s)	304
PciSI	GCTCTTC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	79, 327
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	261
PspFI	CCCAGC	1 cut(s)	230
PspGI	CCWGG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	216, 363
SatI	GCNGC	2 cut(s)	78, 326
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	263
SetI	ASST	8 cut(s)	69, 130, 197, 223, 241, 267, 282, 363
SfaNI	GCATC	1 cut(s)	41
SfuI	TTCGAA	1 cut(s)	304
Sse9I	AATT	1 cut(s)	166
StyD4I	CCNGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	91, 251
TaiI	ACGT	1 cut(s)	223
TaqI	TCGA	1 cut(s)	304
TasI	AATT	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	216, 363
Tru9I	TTAA	2 cut(s)	216, 363
TscAI	CASTG	1 cut(s)	96
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	77, 325
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	135, 216, 323
TspRI	CASTG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.