Rmu_co8327045.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8327045.1
OG0017055
Physical Location & Seq
Forward (+)
1 .. 964
964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8327045.1_g000001.1.cds

Sequence Viewer

Length: 964 bp
actacattccccaacacagaaaatgactctgcttcttacttcaagttgctcaacttttctattcagaatctacgttttgctgagcccacagttcctaagccaatagccattatactccctgagagtgttgagcagataataaactctgtattctgctctagagaagtgttcttggcaatcagagtgaggtgtggtggacacagctatgaagggacatcatctgttgctgctgatggagctccatttgtgatcattgacatgatgaatttgaacagggtttctgtggatttggaaaccgaaatggcatgggtggaaggaggtgcaacactaggtgagacgtaccatgcaattgccaaagcaagcagtgttcacggtttctcagctgggtcatgcccaactgttggtgccagtggccatattgctggcggtggatttggactactttcaaggaaatatggacttgcagctgataatgtggcggatgcacttcttgttgatgctgacggacggttgttagaccgacaaggcatgggagaggatgtgttttgggctattagaggaggtggtgggggtgtttgggggattgtctatgcatggaaaatccaactgtccaaagtgccacaaaaagttacagtttttctggcgtctagagcaggaaacaaaagccatatagcaaatctagtagacaagtggcaacatgttgcacctttcttagaagatgacttctatatttcctgttttgttggtgctgggttgccagaagccaagaccagtggtattactgggatgtcagcgacatttaaagggttttatctgggtccaagaagcagtgctatgtccaccctagatcaggttttccctgacttgggtattgtaaaagaagattgcaaggaaatgagttggatcgagtcgattgtattcttctccggcctaggtaatggaagtgccatctccgacttgagaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

321

Amino Acids

34.28

Weight (kDa)

5.28

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44380 AT5G44380
fragaria_vesca FvH4_2g00110
malus_domestica MD00G1103700.v1.1
prunus_persica Prupe.4G257400_v2.0.a1
pyrus_communis pycom10g00010
rosa_chinensis RchiOBHm_Chr6g0249371
rosa_laevigata RLG00000015586
rosa_multiflora Rmu_co8327045.1_g000001 Rmu_sc0006234.1_g000001
rosa_roxburghii Rroxscaffold_7G00217810
rosa_rugosa Rorug05G0491200
rosa_wichuraiana Rw6G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 404
AccB7I CCANNNNNTGG 1 cut(s) 401
AccI GTMKAC 1 cut(s) 684
AciI CCGC 2 cut(s) 426, 479
AclWI GGATC 1 cut(s) 911
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 1 cut(s) 265
AcyI GRCGYC 1 cut(s) 644
AdeI CACNNNGTG 1 cut(s) 332
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 4 cut(s) 401, 850, 865, 866
AflIII ACRYGT 1 cut(s) 697
AgsI TTSAA 3 cut(s) 43, 271, 447
AluBI AGCT 4 cut(s) 204, 239, 383, 467
AluI AGCT 4 cut(s) 204, 239, 383, 467
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 1 cut(s) 911
AoxI GGCC 2 cut(s) 412, 928
ApeKI GCWGC 2 cut(s) 227, 464
ApoI RAATTY 1 cut(s) 265
AspA2I CCTAGG 1 cut(s) 931
AspS9I GGNCC 1 cut(s) 818
AsuHPI GGTGA 1 cut(s) 344
AvaII GGWCC 1 cut(s) 818
AvrII CCTAGG 1 cut(s) 931
BalI TGGCCA 1 cut(s) 414
BanI GGYRCC 1 cut(s) 404
BanII GRGCYC 2 cut(s) 87, 241
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 214, 476
BccI CCATC 2 cut(s) 227, 956
BclI TGATCA 1 cut(s) 249
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 6 cut(s) 159, 329, 648, 680, 845, 932
BisI GCNGC 2 cut(s) 228, 465
BlnI CCTAGG 1 cut(s) 931
BlpI GCTNAGC 1 cut(s) 81
BlsI GCNGC 2 cut(s) 229, 466
Bme18I GGWCC 1 cut(s) 818
BmgT120I GGNCC 1 cut(s) 818
BmiI GGNNCC 2 cut(s) 406, 819
BmrI ACTGGG 1 cut(s) 792
BmsI GCATC 2 cut(s) 472, 487
BmuI ACTGGG 1 cut(s) 792
Bpu10I CCTNAGC 1 cut(s) 96
Bpu1102I GCTNAGC 1 cut(s) 81
BsaHI GRCGYC 1 cut(s) 644
BsaJI CCNNGG 1 cut(s) 931
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 4 cut(s) 401, 850, 865, 866
Bse1I ACTGG 3 cut(s) 408, 771, 787
BseDI CCNNGG 1 cut(s) 931
BseGI GGATG 3 cut(s) 487, 544, 792
BseLI CCNNNNNNNGG 4 cut(s) 401, 850, 865, 866
BseMII CTCAG 3 cut(s) 72, 111, 393
BseNI ACTGG 3 cut(s) 408, 771, 787
BseRI GAGGAG 1 cut(s) 573
BseXI GCAGC 2 cut(s) 214, 476
BseYI CCCAGC 2 cut(s) 383, 749
BshFI GGCC 2 cut(s) 414, 930
BshNI GGYRCC 1 cut(s) 404
BsiHKAI GWGCWC 1 cut(s) 241
BsiSI CCGG 1 cut(s) 927
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 4 cut(s) 401, 850, 865, 866
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 2 cut(s) 414, 930
Bsp1286I GDGCHC 2 cut(s) 87, 241
Bsp143I GATC 3 cut(s) 249, 847, 903
Bsp1720I GCTNAGC 1 cut(s) 81
BspACI CCGC 2 cut(s) 426, 479
BspANI GGCC 2 cut(s) 414, 930
BspCNI CTCAG 3 cut(s) 73, 112, 392
BspLI GGNNCC 2 cut(s) 406, 819
BspPI GGATC 1 cut(s) 911
BspT107I GGYRCC 1 cut(s) 404
BsrI ACTGG 3 cut(s) 408, 771, 787
BssECI CCNNGG 1 cut(s) 931
BssMI GATC 3 cut(s) 249, 847, 903
BssNI GRCGYC 1 cut(s) 644
BssT1I CCWWGG 1 cut(s) 931
Bst4CI ACNGT 6 cut(s) 91, 374, 400, 510, 609, 634
BstACI GRCGYC 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 361, 424
BstDEI CTNAG 5 cut(s) 81, 96, 120, 379, 712
BstENI CCTNNNNNAGG 1 cut(s) 848
BstF5I GGATG 3 cut(s) 487, 544, 792
BstKTI GATC 3 cut(s) 252, 850, 906
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 3 cut(s) 249, 847, 903
BstMWI GCNNNNNNNGC 2 cut(s) 236, 650
BstNSI RCATGY 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 214, 476
BstXI CCANNNNNNTGG 1 cut(s) 422
BsuRI GGCC 2 cut(s) 414, 930
BtsCI GGATG 3 cut(s) 487, 544, 792
BtsI GCAGTG 2 cut(s) 370, 835
BtsIMutI CAGTG 4 cut(s) 370, 415, 778, 835
Cac8I GCNNGC 2 cut(s) 361, 424
Cfr13I GGNCC 1 cut(s) 818
CseI GACGC 1 cut(s) 633
Csp6I GTAC 1 cut(s) 340
CspCI CAANNNNNGTGG 2 cut(s) 754, 789
CviAII CATG 7 cut(s) 259, 306, 344, 390, 529, 594, 698
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 5 cut(s) 81, 96, 120, 379, 712
DpnI GATC 3 cut(s) 251, 849, 905
DpnII GATC 3 cut(s) 249, 847, 903
DraI TTTAAA 1 cut(s) 802
DraIII CACNNNGTG 1 cut(s) 332
EaeI YGGCCR 1 cut(s) 412
EciI GGCGGA 1 cut(s) 494
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 931
Eco24I GRGCYC 2 cut(s) 87, 241
Eco47I GGWCC 1 cut(s) 818
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoNI CCTNNNNNAGG 1 cut(s) 848
EcoT14I CCWWGG 1 cut(s) 931
EcoT22I ATGCAT 1 cut(s) 595
EcoT38I GRGCYC 2 cut(s) 87, 241
ErhI CCWWGG 1 cut(s) 931
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 7 cut(s) 262, 309, 347, 393, 532, 597, 701
FaqI GGGAC 1 cut(s) 226
FatI CATG 7 cut(s) 258, 305, 343, 389, 528, 593, 697
FbaI TGATCA 1 cut(s) 249
FblI GTMKAC 1 cut(s) 684
Fnu4HI GCNGC 2 cut(s) 228, 465
FokI GGATG 3 cut(s) 494, 551, 799
FriOI GRGCYC 2 cut(s) 87, 241
Fsp4HI GCNGC 2 cut(s) 228, 465
FspBI CTAG 6 cut(s) 159, 329, 648, 680, 845, 932
GluI GCNGC 2 cut(s) 228, 465
GsaI CCCAGC 2 cut(s) 387, 753
HaeIII GGCC 2 cut(s) 414, 930
HapII CCGG 1 cut(s) 927
HgaI GACGC 1 cut(s) 633
Hin1I GRCGYC 1 cut(s) 644
Hin1II CATG 7 cut(s) 262, 309, 347, 393, 532, 597, 701
HinfI GANTC 3 cut(s) 26, 67, 908
HpaII CCGG 1 cut(s) 927
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 4 cut(s) 197, 370, 685, 840
Hpy188I TCNGA 3 cut(s) 66, 182, 955
Hpy188III TCNNGA 2 cut(s) 159, 648
Hpy8I GTNNAC 4 cut(s) 197, 370, 685, 840
HpyAV CCTTC 2 cut(s) 203, 308
HpyCH4III ACNGT 6 cut(s) 91, 374, 400, 510, 609, 634
HpyCH4IV ACGT 2 cut(s) 73, 338
HpyCH4V TGCA 7 cut(s) 323, 347, 464, 485, 593, 704, 888
HpyF10VI GCNNNNNNNGC 2 cut(s) 236, 650
HpyF3I CTNAG 5 cut(s) 81, 96, 120, 379, 712
HpySE526I ACGT 2 cut(s) 73, 338
Hsp92I GRCGYC 1 cut(s) 644
Hsp92II CATG 7 cut(s) 262, 309, 347, 393, 532, 597, 701
Ksp22I TGATCA 1 cut(s) 249
Kzo9I GATC 3 cut(s) 249, 847, 903
LmnI GCTCC 2 cut(s) 236, 244
Lsp1109I GCAGC 2 cut(s) 214, 476
LweI GCATC 2 cut(s) 472, 487
MaeI CTAG 6 cut(s) 159, 329, 648, 680, 845, 932
MaeII ACGT 2 cut(s) 73, 338
MaeIII GTNAC 1 cut(s) 628
MalI GATC 3 cut(s) 251, 849, 905
MboI GATC 3 cut(s) 249, 847, 903
MboII GAAGA 3 cut(s) 728, 893, 913
MfeI CAATTG 1 cut(s) 348
MhlI GDGCHC 2 cut(s) 87, 241
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 2 cut(s) 265, 348
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 2 cut(s) 20, 917
MmeI TCCRAC 2 cut(s) 628, 881
MnlI CCTC 5 cut(s) 180, 311, 529, 551, 554
Mox20I TGGCCA 1 cut(s) 414
Mph1103I ATGCAT 1 cut(s) 595
MscI TGGCCA 1 cut(s) 414
MseI TTAA 1 cut(s) 801
MslI CAYNNNNRTG 2 cut(s) 204, 257
Msp20I TGGCCA 1 cut(s) 414
MspA1I CMGCKG 2 cut(s) 383, 467
MspI CCGG 1 cut(s) 927
MunI CAATTG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 236, 650
NdeII GATC 3 cut(s) 249, 847, 903
NlaIII CATG 7 cut(s) 262, 309, 347, 393, 532, 597, 701
NlaIV GGNNCC 2 cut(s) 406, 819
NsiI ATGCAT 1 cut(s) 595
NspI RCATGY 1 cut(s) 701
PciI ACATGT 1 cut(s) 697
PfeI GAWTC 1 cut(s) 67
PflMI CCANNNNNTGG 1 cut(s) 401
PkrI GCNGC 2 cut(s) 229, 466
PleI GAGTC 2 cut(s) 20, 916
PpsI GAGTC 2 cut(s) 20, 916
PscI ACATGT 1 cut(s) 697
Psp124BI GAGCTC 1 cut(s) 241
PspFI CCCAGC 2 cut(s) 383, 749
PspN4I GGNNCC 2 cut(s) 406, 819
PspPI GGNCC 1 cut(s) 818
PvuII CAGCTG 2 cut(s) 383, 467
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
RseI CAYNNNNRTG 2 cut(s) 204, 257
SacI GAGCTC 1 cut(s) 241
SaqAI TTAA 1 cut(s) 801
SatI GCNGC 2 cut(s) 228, 465
Sau3AI GATC 3 cut(s) 249, 847, 903
Sau96I GGNCC 1 cut(s) 818
SchI GAGTC 2 cut(s) 20, 917
SduI GDGCHC 2 cut(s) 87, 241
SfaNI GCATC 2 cut(s) 472, 487
SinI GGWCC 1 cut(s) 818
SmiMI CAYNNNNRTG 2 cut(s) 204, 257
SmlI CTYRAG 1 cut(s) 958
SmoI CTYRAG 1 cut(s) 958
Sse9I AATT 2 cut(s) 265, 348
SsiI CCGC 2 cut(s) 426, 479
SspMI CTAG 6 cut(s) 159, 329, 648, 680, 845, 932
SstI GAGCTC 1 cut(s) 241
StyI CCWWGG 1 cut(s) 931
TaaI ACNGT 6 cut(s) 91, 374, 400, 510, 609, 634
TaiI ACGT 2 cut(s) 76, 341
TaqI TCGA 2 cut(s) 906, 911
TaqII GACCGA 1 cut(s) 534
TasI AATT 2 cut(s) 265, 348
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TscAI CASTG 4 cut(s) 370, 415, 778, 835
TseI GCWGC 2 cut(s) 227, 464
TspDTI ATGAA 2 cut(s) 222, 278
TspGWI ACGGA 1 cut(s) 519
TspRI CASTG 4 cut(s) 370, 415, 778, 835
Van91I CCANNNNNTGG 1 cut(s) 401
VpaK11BI GGWCC 1 cut(s) 818
XagI CCTNNNNNAGG 1 cut(s) 848
XapI RAATTY 1 cut(s) 265
XbaI TCTAGA 2 cut(s) 158, 647
XceI RCATGY 1 cut(s) 701
XmaJI CCTAGG 1 cut(s) 931
XmiI GTMKAC 1 cut(s) 684
XspI CTAG 6 cut(s) 159, 329, 648, 680, 845, 932
Zsp2I ATGCAT 1 cut(s) 595
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.