Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350817.1

Orthogroup ID

OG0021269

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 880

Gene Structure 683 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350817.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atgagatcgagaaggacgccaacatgggcccggcctcggaattccgatgatgggtattcaagtgattcagtattaaggcatgcatctagtgatttcaagaagatgggccaacgcatatttgtagtaatagtaggtggagctactagatcagagcttagggtttgccacaaactcacagctaagttgaagagggaagttgttttaggctcctcgggtcttgatgatcctgcaccctttataacgagactaaaaatgctgacagagaatgagctctcattggatgatctccagatctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005886 GO:0016020 GO:0019898 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04721 map04721

Pfam Domains

Protein Families

Sec1

Protein Analysis

98

Amino Acids

11.03

Weight (kDa)

9.88

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021269)

Species	Orthologous Gene IDs
pyrus_communis	pycom07g10350
rosa_multiflora	Rmu_co8350817.1_g000001
rosa_samantha	Rh5BG264300 Rh5CG297000 Rh5DG272700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	239
AclWI	GGATC	1 cut(s)	218
AcsI	RAATTY	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	17
AfiI	CCNNNNNNNGG	2 cut(s)	36, 51
AgsI	TTSAA	3 cut(s)	60, 97, 187
AluBI	AGCT	4 cut(s)	140, 154, 179, 271
AluI	AGCT	4 cut(s)	140, 154, 179, 271
Alw21I	GWGCWC	1 cut(s)	273
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	218
Ama87I	CYCGRG	1 cut(s)	211
AoxI	GGCC	3 cut(s)	27, 32, 106
ApaI	GGGCCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	40
AspS9I	GGNCC	3 cut(s)	27, 28, 106
AsuC2I	CCSGG	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	211
BaeGI	GKGCMC	1 cut(s)	31
BanII	GRGCYC	2 cut(s)	31, 273
Bbv12I	GWGCWC	1 cut(s)	273
BccI	CCATC	2 cut(s)	44, 97
BcnI	CCSGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	87, 144
BglII	AGATCT	1 cut(s)	291
Bme1390I	CCNGG	1 cut(s)	31
BmeT110I	CYCGRG	1 cut(s)	211
BmgT120I	GGNCC	3 cut(s)	27, 28, 106
BmiI	GGNNCC	2 cut(s)	29, 208
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	272
Bpu10I	CCTNAGC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	17
BsaJI	CCNNGG	2 cut(s)	35, 210
Bsc4I	CCNNNNNNNGG	2 cut(s)	36, 51
BseDI	CCNNGG	2 cut(s)	35, 210
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	2 cut(s)	36, 51
BseRI	GAGGAG	1 cut(s)	199
BseSI	GKGCMC	1 cut(s)	31
BsgI	GTGCAG	1 cut(s)	213
BshFI	GGCC	3 cut(s)	29, 34, 108
BsiHKAI	GWGCWC	1 cut(s)	273
BsiHKCI	CYCGRG	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	36, 51
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	3 cut(s)	29, 34, 108
BsoBI	CYCGRG	1 cut(s)	211
Bsp120I	GGGCCC	1 cut(s)	27
Bsp1286I	GDGCHC	2 cut(s)	31, 273
Bsp143I	GATC	5 cut(s)	5, 146, 223, 283, 291
BspANI	GGCC	3 cut(s)	29, 34, 108
BspLI	GGNNCC	2 cut(s)	29, 208
BspPI	GGATC	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	35, 210
BssMI	GATC	5 cut(s)	5, 146, 223, 283, 291
BssNI	GRCGYC	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	182
BstACI	GRCGYC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	2 cut(s)	155, 180
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	5 cut(s)	8, 149, 226, 286, 294
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	5 cut(s)	5, 146, 223, 283, 291
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	29
BstSLI	GKGCMC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	3 cut(s)	29, 34, 108
BtsCI	GGATG	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	3 cut(s)	27, 28, 106
CseI	GACGC	1 cut(s)	25
CviAII	CATG	2 cut(s)	24, 80
CviJI	RGCY	8 cut(s)	29, 34, 108, 140, 154, 179, 207, 271
CviKI_1	RGCY	8 cut(s)	29, 34, 108, 140, 154, 179, 207, 271
DdeI	CTNAG	2 cut(s)	155, 180
DpnI	GATC	5 cut(s)	7, 148, 225, 285, 293
DpnII	GATC	5 cut(s)	5, 146, 223, 283, 291
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	271
Eco24I	GRGCYC	2 cut(s)	31, 273
Eco53kI	GAGCTC	1 cut(s)	271
Eco88I	CYCGRG	1 cut(s)	211
EcoICRI	GAGCTC	1 cut(s)	271
EcoRI	GAATTC	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	85
EcoT38I	GRGCYC	2 cut(s)	31, 273
FaeI	CATG	2 cut(s)	27, 83
FaiI	YATR	4 cut(s)	25, 81, 116, 239
FatI	CATG	2 cut(s)	23, 79
FokI	GGATG	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	31, 273
FspBI	CTAG	2 cut(s)	87, 144
GsuI	CTGGAG	1 cut(s)	272
HaeIII	GGCC	3 cut(s)	29, 34, 108
HapII	CCGG	1 cut(s)	31
HgaI	GACGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	17
Hin1II	CATG	2 cut(s)	27, 83
HinfI	GANTC	1 cut(s)	65
HpaII	CCGG	1 cut(s)	31
Hpy188I	TCNGA	4 cut(s)	39, 46, 151, 296
Hpy188III	TCNNGA	4 cut(s)	9, 97, 218, 289
HpyAV	CCTTC	1 cut(s)	6
HpyCH4V	TGCA	2 cut(s)	83, 230
HpyF3I	CTNAG	2 cut(s)	155, 180
Hsp92I	GRCGYC	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	27, 83
Kzo9I	GATC	5 cut(s)	5, 146, 223, 283, 291
LmnI	GCTCC	2 cut(s)	137, 212
LpnPI	CCDG	2 cut(s)	44, 240
LweI	GCATC	1 cut(s)	92
MaeI	CTAG	2 cut(s)	87, 144
MalI	GATC	5 cut(s)	7, 148, 225, 285, 293
MboI	GATC	5 cut(s)	5, 146, 223, 283, 291
MboII	GAAGA	2 cut(s)	112, 199
MflI	RGATCY	1 cut(s)	291
MhlI	GDGCHC	2 cut(s)	31, 273
MluCI	AATT	1 cut(s)	40
MnlI	CCTC	3 cut(s)	45, 183, 220
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	1 cut(s)	74
MspI	CCGG	1 cut(s)	31
MspR9I	CCNGG	1 cut(s)	31
NciI	CCSGG	1 cut(s)	31
NdeII	GATC	5 cut(s)	5, 146, 223, 283, 291
NlaIII	CATG	2 cut(s)	27, 83
NlaIV	GGNNCC	2 cut(s)	29, 208
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	1 cut(s)	83
PaeI	GCATGC	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	65
PsiI	TTATAA	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	273
PspN4I	GGNNCC	2 cut(s)	29, 208
PspOMI	GGGCCC	1 cut(s)	27
PspPI	GGNCC	3 cut(s)	27, 28, 106
PsuI	RGATCY	1 cut(s)	291
SacI	GAGCTC	1 cut(s)	273
SaqAI	TTAA	1 cut(s)	74
Sau3AI	GATC	5 cut(s)	5, 146, 223, 283, 291
Sau96I	GGNCC	3 cut(s)	27, 28, 106
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	31, 273
SetI	ASST	5 cut(s)	136, 142, 156, 181, 273
SfaNI	GCATC	1 cut(s)	92
SphI	GCATGC	1 cut(s)	83
Sse9I	AATT	1 cut(s)	40
SspMI	CTAG	2 cut(s)	87, 144
SstI	GAGCTC	1 cut(s)	273
StyD4I	CCNGG	1 cut(s)	29
TaqI	TCGA	1 cut(s)	8
TasI	AATT	1 cut(s)	40
TfiI	GAWTC	1 cut(s)	65
Tru1I	TTAA	1 cut(s)	74
Tru9I	TTAA	1 cut(s)	74
XapI	RAATTY	1 cut(s)	40
XceI	RCATGY	1 cut(s)	83
XspI	CTAG	2 cut(s)	87, 144
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.