Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8385645.1

Orthogroup ID

OG0025697

Physical Location & Seq

Genomic Coordinates Reverse (-)

891 .. 1190

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8385645.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

gccgggctcaacccggtgcaggaagtagttcccaatacccaagcccagctcaattacaacaatgacttctatgtcccttcgatcccgcctctctgccacgttgaatcgccgccggagaggatgggaaggaaagtggaggaggaggtgcagagtggactcaaaactcagcgagttgaaaactcgggattgttccagcagaactcgaacctgttcacgcacaacatgcgcaccccgattgacacttacgggtcgggcacccgattcggcctggccggggccgggtttcagctacggcagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

99

Amino Acids

11.02

Weight (kDa)

6.1

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025697)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8385645.1_g000001
rosa_samantha	Rh5BG240800 Rh5DG249200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	71
Acc16I	TGCGCA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	254
AciI	CCGC	2 cut(s)	86, 110
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	270
AfiI	CCNNNNNNNGG	3 cut(s)	19, 274, 279
AgsI	TTSAA	2 cut(s)	104, 176
AjnI	CCWGG	1 cut(s)	267
AluBI	AGCT	2 cut(s)	49, 289
AluI	AGCT	2 cut(s)	49, 289
AlwI	GGATC	1 cut(s)	76
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	3 cut(s)	265, 270, 276
Asp700I	GAANNNNTTC	2 cut(s)	27, 209
AspLEI	GCGC	1 cut(s)	228
AspS9I	GGNCC	1 cut(s)	276
AsuC2I	CCSGG	4 cut(s)	4, 14, 274, 280
AvaI	CYCGRG	1 cut(s)	181
BaeGI	GKGCMC	1 cut(s)	257
BanI	GGYRCC	1 cut(s)	254
BanII	GRGCYC	1 cut(s)	9
BccI	CCATC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	244, 278
BciT130I	CCWGG	1 cut(s)	269
BcnI	CCSGG	4 cut(s)	4, 14, 274, 280
BisI	GCNGC	1 cut(s)	110
BlsI	GCNGC	1 cut(s)	111
Bme1390I	CCNGG	5 cut(s)	4, 14, 269, 274, 280
BmeT110I	CYCGRG	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	276
BmiI	GGNNCC	2 cut(s)	256, 277
BmrFI	CCNGG	5 cut(s)	4, 14, 269, 274, 280
BpuMI	CCSGG	4 cut(s)	4, 14, 274, 280
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 274, 279
BseBI	CCWGG	1 cut(s)	269
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	126
BseLI	CCNNNNNNNGG	3 cut(s)	19, 274, 279
BseMII	CTCAG	1 cut(s)	179
BseRI	GAGGAG	2 cut(s)	152, 155
BseSI	GKGCMC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	45
BsgI	GTGCAG	2 cut(s)	38, 167
BshFI	GGCC	3 cut(s)	267, 272, 278
BshNI	GGYRCC	1 cut(s)	254
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	5 cut(s)	3, 14, 113, 273, 279
BslFI	GGGAC	1 cut(s)	59
BslI	CCNNNNNNNGG	3 cut(s)	19, 274, 279
BsmFI	GGGAC	1 cut(s)	59
BsnI	GGCC	3 cut(s)	267, 272, 278
BsoBI	CYCGRG	1 cut(s)	181
Bsp1286I	GDGCHC	2 cut(s)	9, 257
Bsp143I	GATC	1 cut(s)	81
BspACI	CCGC	2 cut(s)	86, 110
BspANI	GGCC	3 cut(s)	267, 272, 278
BspCNI	CTCAG	1 cut(s)	178
BspLI	GGNNCC	2 cut(s)	256, 277
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	254
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	1 cut(s)	126
BstHHI	GCGC	1 cut(s)	228
BstKTI	GATC	1 cut(s)	84
BstMBI	GATC	1 cut(s)	81
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	5 cut(s)	2, 12, 267, 272, 278
BstSLI	GKGCMC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	267, 272, 278
BtsCI	GGATG	1 cut(s)	126
CfoI	GCGC	1 cut(s)	228
Cfr13I	GGNCC	1 cut(s)	276
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	7 cut(s)	7, 44, 49, 267, 272, 278, 289
CviKI_1	RGCY	7 cut(s)	7, 44, 49, 267, 272, 278, 289
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	1 cut(s)	83
DpnII	GATC	1 cut(s)	81
DrdI	GACNNNNNNGTC	1 cut(s)	71
DseDI	GACNNNNNNGTC	1 cut(s)	71
EaeI	YGGCCR	1 cut(s)	270
Eco24I	GRGCYC	1 cut(s)	9
Eco88I	CYCGRG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	267
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	1 cut(s)	226
FaiI	YATR	2 cut(s)	72, 224
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	93
Fnu4HI	GCNGC	1 cut(s)	110
FokI	GGATG	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	110
FspAI	RTGCGCAY	1 cut(s)	227
FspI	TGCGCA	1 cut(s)	227
GlaI	GCGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	110
GsaI	CCCAGC	1 cut(s)	49
HaeIII	GGCC	3 cut(s)	267, 272, 278
HapII	CCGG	5 cut(s)	3, 14, 113, 273, 279
HhaI	GCGC	1 cut(s)	228
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	226
HinP1I	GCGC	1 cut(s)	226
HinfI	GANTC	3 cut(s)	104, 156, 261
HpaII	CCGG	5 cut(s)	3, 14, 113, 273, 279
Hpy166II	GTNNAC	2 cut(s)	155, 213
Hpy188III	TCNNGA	1 cut(s)	183
Hpy8I	GTNNAC	2 cut(s)	155, 213
HpyAV	CCTTC	2 cut(s)	87, 120
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	19, 148
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	165
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	226
Kzo9I	GATC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	99
MalI	GATC	1 cut(s)	83
MboI	GATC	1 cut(s)	81
MhlI	GDGCHC	2 cut(s)	9, 257
MluCI	AATT	1 cut(s)	52
MlyI	GAGTC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	99, 111, 130, 133, 136
MroXI	GAANNNNTTC	2 cut(s)	27, 209
MspI	CCGG	5 cut(s)	3, 14, 113, 273, 279
MspR9I	CCNGG	5 cut(s)	4, 14, 269, 274, 280
MvaI	CCWGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	4 cut(s)	4, 14, 274, 280
NdeII	GATC	1 cut(s)	81
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	2 cut(s)	256, 277
NsbI	TGCGCA	1 cut(s)	227
NspI	RCATGY	1 cut(s)	226
PdmI	GAANNNNTTC	2 cut(s)	27, 209
PfeI	GAWTC	2 cut(s)	104, 261
PkrI	GCNGC	1 cut(s)	111
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	267
PspFI	CCCAGC	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	267
PspN4I	GGNNCC	2 cut(s)	256, 277
PspPI	GGNCC	1 cut(s)	276
SatI	GCNGC	1 cut(s)	110
Sau3AI	GATC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	276
SchI	GAGTC	1 cut(s)	150
ScrFI	CCNGG	5 cut(s)	4, 14, 269, 274, 280
SduI	GDGCHC	2 cut(s)	9, 257
SetI	ASST	5 cut(s)	51, 102, 147, 210, 291
Sse9I	AATT	1 cut(s)	52
SsiI	CCGC	2 cut(s)	86, 110
StyD4I	CCNGG	5 cut(s)	2, 12, 267, 272, 278
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	80, 203
TasI	AATT	1 cut(s)	52
TauI	GCSGC	1 cut(s)	112
TfiI	GAWTC	2 cut(s)	104, 261
XceI	RCATGY	1 cut(s)	226
XmnI	GAANNNNTTC	2 cut(s)	27, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.