Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0025697

Physical Location & Seq

Genomic Coordinates Forward (+)

29011818 .. 29012351

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG240800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTCGACGATGGCAAACGTTCCGAGCAAAGAGCAGAGCTGCAACGGCTCGTCGTCCGAGTGCTCTTCGCAACTGGACGACGTGCTCGAGTGGCTGCCGGAGATTGAGGACAGGTTCTTCACTCTGCCGCGAATCAACTCGCTTAAGGCTCTACCCCAGCAGCAGGAGGACAACAAGCTCAATCTTCAGAATCTCGGGAATCTCGGGTCGGGCAATTTTGACTGGGCGAGTCTAGCCGGGCTCAACCCGGTGCAGGAAGTAGTTCCCAATACCCAAGCCCAGCTCAATTACAACAATGACTTCTATGTCCCTTCGATCCCGCCTCTCTGCCACGTGGAATCGCCGCCGGAGAGGATGGGAAGGAAAGTGGAGGAGGAGGTGCAGAGTGGACTCAAAACTCAGCGAGTTGAAAACTCGGGATTGTTCCAGCAGAACTCGAACCTGTTCACGCACAACATGCGCACCCCGATTGACACTTACGGGTCGGGCACCCGATTCGGCCTGGCCGGGGCCGGGTTTCAGCTACGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

177

Amino Acids

19.69

Weight (kDa)

4.8

Isoelectric Point (pI)

62.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025697)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8385645.1_g000001
rosa_samantha	Rh5BG240800 Rh5DG249200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	305
Acc16I	TGCGCA	1 cut(s)	461
AccB1I	GGYRCC	1 cut(s)	488
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	1 cut(s)	130
AciI	CCGC	3 cut(s)	128, 320, 344
AclI	AACGTT	1 cut(s)	18
AclWI	GGATC	1 cut(s)	310
AcoI	YGGCCR	1 cut(s)	504
AcuI	CTGAAG	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	334
AfiI	CCNNNNNNNGG	4 cut(s)	163, 253, 508, 513
AflII	CTTAAG	1 cut(s)	143
AgsI	TTSAA	1 cut(s)	410
AjiI	CACGTC	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	501
AluBI	AGCT	4 cut(s)	39, 178, 283, 523
AluI	AGCT	4 cut(s)	39, 178, 283, 523
Alw21I	GWGCWC	2 cut(s)	65, 87
AlwI	GGATC	1 cut(s)	310
Ama87I	CYCGRG	4 cut(s)	86, 194, 203, 415
AoxI	GGCC	3 cut(s)	499, 504, 510
ApeKI	GCWGC	3 cut(s)	39, 94, 160
Asp700I	GAANNNNTTC	2 cut(s)	261, 443
AspLEI	GCGC	1 cut(s)	462
AspS9I	GGNCC	1 cut(s)	510
AsuC2I	CCSGG	4 cut(s)	238, 248, 508, 514
AvaI	CYCGRG	4 cut(s)	86, 194, 203, 415
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	488
BanII	GRGCYC	1 cut(s)	243
BbrPI	CACGTG	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 87
BbvI	GCAGC	3 cut(s)	26, 81, 172
BccI	CCATC	2 cut(s)	4, 349
BceAI	ACGGC	1 cut(s)	61
BcgI	CGANNNNNNTGC	2 cut(s)	478, 512
BciT130I	CCWGG	1 cut(s)	503
BcnI	CCSGG	4 cut(s)	238, 248, 508, 514
BfaI	CTAG	1 cut(s)	233
BfrI	CTTAAG	1 cut(s)	143
BisI	GCNGC	5 cut(s)	40, 95, 128, 161, 344
BlsI	GCNGC	5 cut(s)	41, 96, 129, 162, 345
Bme1390I	CCNGG	5 cut(s)	238, 248, 503, 508, 514
BmeT110I	CYCGRG	4 cut(s)	86, 194, 203, 415
BmgBI	CACGTC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	510
BmiI	GGNNCC	2 cut(s)	490, 511
BmrFI	CCNGG	5 cut(s)	238, 248, 503, 508, 514
BmrI	ACTGGG	1 cut(s)	232
BmuI	ACTGGG	1 cut(s)	232
BpuMI	CCSGG	4 cut(s)	238, 248, 508, 514
BsaAI	YACGTR	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	4 cut(s)	163, 253, 508, 513
Bse1I	ACTGG	2 cut(s)	78, 227
BseBI	CCWGG	1 cut(s)	503
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	360
BseLI	CCNNNNNNNGG	4 cut(s)	163, 253, 508, 513
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	78, 227
BseRI	GAGGAG	2 cut(s)	386, 389
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	3 cut(s)	26, 81, 172
BseYI	CCCAGC	2 cut(s)	156, 279
BsgI	GTGCAG	2 cut(s)	272, 401
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	501, 506, 512
BshNI	GGYRCC	1 cut(s)	488
BsiHKAI	GWGCWC	2 cut(s)	65, 87
BsiHKCI	CYCGRG	4 cut(s)	86, 194, 203, 415
BsiSI	CCGG	6 cut(s)	98, 237, 248, 347, 507, 513
BslFI	GGGAC	1 cut(s)	293
BslI	CCNNNNNNNGG	4 cut(s)	163, 253, 508, 513
BsmFI	GGGAC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	501, 506, 512
BsoBI	CYCGRG	4 cut(s)	86, 194, 203, 415
Bsp1286I	GDGCHC	4 cut(s)	65, 87, 243, 491
Bsp143I	GATC	1 cut(s)	315
BspACI	CCGC	3 cut(s)	128, 320, 344
BspANI	GGCC	3 cut(s)	501, 506, 512
BspCNI	CTCAG	1 cut(s)	412
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	490, 511
BspPI	GGATC	1 cut(s)	310
BspQI	GCTCTTC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	488
BspTI	CTTAAG	1 cut(s)	143
BsrI	ACTGG	2 cut(s)	78, 227
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	503
Bst6I	CTCTTC	1 cut(s)	70
BstAFI	CTTAAG	1 cut(s)	143
BstAPI	GCANNNNNTGC	1 cut(s)	457
BstBAI	YACGTR	1 cut(s)	334
BstDEI	CTNAG	1 cut(s)	399
BstF5I	GGATG	1 cut(s)	360
BstFNI	CGCG	1 cut(s)	130
BstHHI	GCGC	1 cut(s)	462
BstKTI	GATC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	315
BstMWI	GCNNNNNNNGC	4 cut(s)	45, 91, 233, 457
BstNI	CCWGG	1 cut(s)	503
BstNSI	RCATGY	1 cut(s)	460
BstSCI	CCNGG	5 cut(s)	236, 246, 501, 506, 512
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	3 cut(s)	26, 81, 172
BsuRI	GGCC	3 cut(s)	501, 506, 512
BtrI	CACGTC	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	360
CfoI	GCGC	1 cut(s)	462
Cfr13I	GGNCC	1 cut(s)	510
CviAII	CATG	1 cut(s)	457
DdeI	CTNAG	1 cut(s)	399
DpnI	GATC	1 cut(s)	317
DpnII	GATC	1 cut(s)	315
DrdI	GACNNNNNNGTC	1 cut(s)	305
DseDI	GACNNNNNNGTC	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	170
Eco72I	CACGTG	1 cut(s)	334
Eco88I	CYCGRG	4 cut(s)	86, 194, 203, 415
EcoRII	CCWGG	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	243
FaeI	CATG	1 cut(s)	460
FaiI	YATR	2 cut(s)	306, 458
FaqI	GGGAC	1 cut(s)	293
FatI	CATG	1 cut(s)	456
FauI	CCCGC	1 cut(s)	327
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	40, 95, 128, 161, 344
FokI	GGATG	1 cut(s)	367
FriOI	GRGCYC	1 cut(s)	243
Fsp4HI	GCNGC	5 cut(s)	40, 95, 128, 161, 344
FspAI	RTGCGCAY	1 cut(s)	461
FspBI	CTAG	1 cut(s)	233
FspI	TGCGCA	1 cut(s)	461
GlaI	GCGC	1 cut(s)	461
GluI	GCNGC	5 cut(s)	40, 95, 128, 161, 344
GsaI	CCCAGC	2 cut(s)	160, 283
HaeIII	GGCC	3 cut(s)	501, 506, 512
HapII	CCGG	6 cut(s)	98, 237, 248, 347, 507, 513
HhaI	GCGC	1 cut(s)	462
Hin1II	CATG	1 cut(s)	460
Hin6I	GCGC	1 cut(s)	460
HinP1I	GCGC	1 cut(s)	460
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	7 cut(s)	132, 190, 199, 229, 338, 390, 495
HpaII	CCGG	6 cut(s)	98, 237, 248, 347, 507, 513
Hpy166II	GTNNAC	3 cut(s)	6, 389, 447
Hpy188I	TCNGA	3 cut(s)	24, 58, 189
Hpy188III	TCNNGA	2 cut(s)	196, 417
Hpy8I	GTNNAC	3 cut(s)	6, 389, 447
Hpy99I	CGWCG	3 cut(s)	10, 55, 83
HpyAV	CCTTC	2 cut(s)	321, 354
HpyCH4IV	ACGT	3 cut(s)	18, 81, 333
HpyCH4V	TGCA	3 cut(s)	42, 253, 382
HpyF10VI	GCNNNNNNNGC	4 cut(s)	45, 91, 233, 457
HpyF3I	CTNAG	1 cut(s)	399
HpySE526I	ACGT	3 cut(s)	18, 81, 333
Hsp92II	CATG	1 cut(s)	460
HspAI	GCGC	1 cut(s)	460
Kzo9I	GATC	1 cut(s)	315
LguI	GCTCTTC	1 cut(s)	70
Lsp1109I	GCAGC	3 cut(s)	26, 81, 172
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	3 cut(s)	18, 81, 333
MalI	GATC	1 cut(s)	317
MboI	GATC	1 cut(s)	315
MboII	GAAGA	3 cut(s)	57, 109, 176
MhlI	GDGCHC	4 cut(s)	65, 87, 243, 491
MluCI	AATT	2 cut(s)	214, 286
MlyI	GAGTC	2 cut(s)	238, 384
MnlI	CCTC	7 cut(s)	100, 160, 333, 345, 364, 367, 370
MroXI	GAANNNNTTC	2 cut(s)	261, 443
MseI	TTAA	1 cut(s)	144
MspCI	CTTAAG	1 cut(s)	143
MspI	CCGG	6 cut(s)	98, 237, 248, 347, 507, 513
MspR9I	CCNGG	5 cut(s)	238, 248, 503, 508, 514
MvaI	CCWGG	1 cut(s)	503
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	45, 91, 233, 457
NciI	CCSGG	4 cut(s)	238, 248, 508, 514
NdeII	GATC	1 cut(s)	315
NlaIII	CATG	1 cut(s)	460
NlaIV	GGNNCC	2 cut(s)	490, 511
NsbI	TGCGCA	1 cut(s)	461
NspI	RCATGY	1 cut(s)	460
PaeR7I	CTCGAG	1 cut(s)	86
PciSI	GCTCTTC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	2 cut(s)	261, 443
PfeI	GAWTC	5 cut(s)	132, 190, 199, 338, 495
PkrI	GCNGC	5 cut(s)	41, 96, 129, 162, 345
PleI	GAGTC	2 cut(s)	237, 384
PmaCI	CACGTG	1 cut(s)	334
PmlI	CACGTG	1 cut(s)	334
PpsI	GAGTC	2 cut(s)	237, 384
Ppu21I	YACGTR	1 cut(s)	334
Psp1406I	AACGTT	1 cut(s)	18
Psp6I	CCWGG	1 cut(s)	501
PspCI	CACGTG	1 cut(s)	334
PspFI	CCCAGC	2 cut(s)	156, 279
PspGI	CCWGG	1 cut(s)	501
PspN4I	GGNNCC	2 cut(s)	490, 511
PspPI	GGNCC	1 cut(s)	510
PspXI	VCTCGAGB	1 cut(s)	86
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	144
SatI	GCNGC	5 cut(s)	40, 95, 128, 161, 344
Sau3AI	GATC	1 cut(s)	315
Sau96I	GGNCC	1 cut(s)	510
SchI	GAGTC	2 cut(s)	238, 384
ScrFI	CCNGG	5 cut(s)	238, 248, 503, 508, 514
SduI	GDGCHC	4 cut(s)	65, 87, 243, 491
Sfr274I	CTCGAG	1 cut(s)	86
SlaI	CTCGAG	1 cut(s)	86
SmlI	CTYRAG	2 cut(s)	86, 143
SmoI	CTYRAG	2 cut(s)	86, 143
Sse9I	AATT	2 cut(s)	214, 286
SsiI	CCGC	3 cut(s)	128, 320, 344
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	5 cut(s)	236, 246, 501, 506, 512
TaiI	ACGT	3 cut(s)	21, 84, 336
TaqI	TCGA	4 cut(s)	5, 87, 314, 437
TasI	AATT	2 cut(s)	214, 286
TauI	GCSGC	2 cut(s)	130, 346
TfiI	GAWTC	5 cut(s)	132, 190, 199, 338, 495
Tru1I	TTAA	1 cut(s)	144
Tru9I	TTAA	1 cut(s)	144
TseI	GCWGC	3 cut(s)	39, 94, 160
Vha464I	CTTAAG	1 cut(s)	143
XceI	RCATGY	1 cut(s)	460
XhoI	CTCGAG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	5
XmnI	GAANNNNTTC	2 cut(s)	261, 443
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.