Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0025697

Physical Location & Seq

Genomic Coordinates Forward (+)

28706635 .. 28708264

Gene Structure 1630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG249200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGGACACGCGTCCTTTTTACCTGTCGAGTCAGCACAGTAATTTCCACCCGCGCGGTTCATGCACCGAAGCAAAAAAAGCCCCAGGGCCGTACTCGTTATCGGATAAGGCCGGCCGCTCGATAACGTCGAACTTTAAGAGGGCTCGTGGTGCCATCCCATTGGCTACTAACCATACTGGGCCCTACATGCGCAAACAGCGTGACACTATGACCTTGGATGAATGGGTGCTGTGTCGTATTTACAAGAAGAGCTCCGGCTCGAGCGCAGTAGTACAGAAGCCGATGTCGACGACGATGACAAACGTTCCGAGCAAAGAGCAGAGCTGCAACGGCTCGTCGTCCGAGTGCTCTTCGCAACTGGACGACGTGCTCGAGTGGCTGCCGGAGATTGAGGACAGGTTCTTCACTCTACCGCGAATCAACTCGCTTAAGGCTCTACCCCAGCAGCAGGAGGACAACAAGCTCAATCTTCAGAATCTCGGGAATCTCGGGTCGGGCAATTTTGACTGGGCGAGTCTAGCCGGGCTCAACCCGGTGCAGGAAGTAGTTCCCAATACCCAAGCCCAGCTCAATTACAACAATGACTTCTATGTCCCTTCGATCCCGCCTCTCTGCCACGTTGAATCGCCGCCGGAGAGGATGGGAAGGAAAGTGGAGGAGGAGGTGCAGAGTGGACTCAAAACTCAGCGAGTTGAAAACTCGGGATTGTTCCAGCAGAACTCGAACCTGTTCACGCACAACATGCGCACCCCGATTGACACTTACGGGTCGGGCACCCGATTCGGCCTGGCCGGGGCCGGGTTTCAGCTACGGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0080090 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

272

Amino Acids

30.31

Weight (kDa)

8.56

Isoelectric Point (pI)

50.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025697)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8385645.1_g000001
rosa_samantha	Rh5BG240800 Rh5DG249200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
Acc16I	TGCGCA	2 cut(s)	191, 746
AccB1I	GGYRCC	2 cut(s)	149, 773
AccBSI	CCGCTC	1 cut(s)	117
AccI	GTMKAC	1 cut(s)	287
AccII	CGCG	4 cut(s)	10, 52, 54, 415
AciI	CCGC	6 cut(s)	50, 54, 115, 413, 605, 629
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	595
AcoI	YGGCCR	2 cut(s)	112, 789
AcuI	CTGAAG	1 cut(s)	455
AfaI	GTAC	2 cut(s)	92, 273
AfiI	CCNNNNNNNGG	4 cut(s)	448, 538, 793, 798
AflII	CTTAAG	1 cut(s)	428
AflIII	ACRYGT	1 cut(s)	8
AgsI	TTSAA	2 cut(s)	623, 695
AjiI	CACGTC	1 cut(s)	367
AjnI	CCWGG	2 cut(s)	82, 786
AluBI	AGCT	5 cut(s)	252, 324, 463, 568, 808
AluI	AGCT	5 cut(s)	252, 324, 463, 568, 808
Alw21I	GWGCWC	3 cut(s)	254, 350, 372
AlwI	GGATC	1 cut(s)	595
Ama87I	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
AoxI	GGCC	7 cut(s)	86, 108, 112, 179, 784, 789, 795
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	3 cut(s)	324, 379, 445
Asp700I	GAANNNNTTC	2 cut(s)	546, 728
AspLEI	GCGC	4 cut(s)	54, 192, 266, 747
AspS9I	GGNCC	4 cut(s)	86, 179, 180, 795
AsuC2I	CCSGG	4 cut(s)	523, 533, 793, 799
AvaI	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
BaeGI	GKGCMC	2 cut(s)	183, 776
BanI	GGYRCC	2 cut(s)	149, 773
BanII	GRGCYC	4 cut(s)	145, 183, 254, 528
BauI	CACGAG	1 cut(s)	144
Bbv12I	GWGCWC	3 cut(s)	254, 350, 372
BbvI	GCAGC	3 cut(s)	311, 366, 457
BccI	CCATC	2 cut(s)	161, 634
BceAI	ACGGC	2 cut(s)	73, 346
BcgI	CGANNNNNNTGC	2 cut(s)	763, 797
BciT130I	CCWGG	2 cut(s)	84, 788
BcnI	CCSGG	4 cut(s)	523, 533, 793, 799
BfaI	CTAG	1 cut(s)	518
BfrI	CTTAAG	1 cut(s)	428
BisI	GCNGC	5 cut(s)	115, 325, 380, 446, 629
BlsI	GCNGC	5 cut(s)	116, 326, 381, 447, 630
Bme1390I	CCNGG	6 cut(s)	84, 523, 533, 788, 793, 799
BmeT110I	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
BmgBI	CACGTC	1 cut(s)	367
BmgT120I	GGNCC	4 cut(s)	86, 179, 180, 795
BmiI	GGNNCC	4 cut(s)	151, 181, 775, 796
BmrFI	CCNGG	6 cut(s)	84, 523, 533, 788, 793, 799
BmrI	ACTGGG	2 cut(s)	186, 517
BmuI	ACTGGG	2 cut(s)	186, 517
BoxI	GACNNNNGTC	1 cut(s)	9
BpuMI	CCSGG	4 cut(s)	523, 533, 793, 799
BsaJI	CCNNGG	4 cut(s)	82, 83, 213, 792
Bsc4I	CCNNNNNNNGG	4 cut(s)	448, 538, 793, 798
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	3 cut(s)	181, 363, 512
BseBI	CCWGG	2 cut(s)	84, 788
BseDI	CCNNGG	4 cut(s)	82, 83, 213, 792
BseGI	GGATG	3 cut(s)	153, 223, 645
BseLI	CCNNNNNNNGG	4 cut(s)	448, 538, 793, 798
BseMII	CTCAG	1 cut(s)	698
BseNI	ACTGG	3 cut(s)	181, 363, 512
BseRI	GAGGAG	2 cut(s)	671, 674
BseSI	GKGCMC	2 cut(s)	183, 776
BseX3I	CGGCCG	1 cut(s)	112
BseXI	GCAGC	3 cut(s)	311, 366, 457
BseYI	CCCAGC	2 cut(s)	441, 564
BsgI	GTGCAG	2 cut(s)	557, 686
Bsh1236I	CGCG	4 cut(s)	10, 52, 54, 415
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	7 cut(s)	88, 110, 114, 181, 786, 791, 797
BshNI	GGYRCC	2 cut(s)	149, 773
BsiEI	CGRYCG	1 cut(s)	115
BsiHKAI	GWGCWC	3 cut(s)	254, 350, 372
BsiHKCI	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
BsiSI	CCGG	8 cut(s)	111, 255, 383, 522, 533, 632, 792, 798
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	4 cut(s)	448, 538, 793, 798
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	7 cut(s)	88, 110, 114, 181, 786, 791, 797
BsoBI	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	7 cut(s)	145, 183, 254, 350, 372, 528, 776
Bsp143I	GATC	1 cut(s)	600
BspACI	CCGC	6 cut(s)	50, 54, 115, 413, 605, 629
BspANI	GGCC	7 cut(s)	88, 110, 114, 181, 786, 791, 797
BspCNI	CTCAG	1 cut(s)	697
BspFNI	CGCG	4 cut(s)	10, 52, 54, 415
BspLI	GGNNCC	4 cut(s)	151, 181, 775, 796
BspPI	GGATC	1 cut(s)	595
BspQI	GCTCTTC	2 cut(s)	242, 355
BspT107I	GGYRCC	2 cut(s)	149, 773
BspTI	CTTAAG	1 cut(s)	428
BsrBI	CCGCTC	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	3 cut(s)	181, 363, 512
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	4 cut(s)	82, 83, 213, 792
BssMI	GATC	1 cut(s)	600
BssSI	CACGAG	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	213
Bst2BI	CACGAG	1 cut(s)	144
Bst2UI	CCWGG	2 cut(s)	84, 788
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	2 cut(s)	242, 355
BstAFI	CTTAAG	1 cut(s)	428
BstAPI	GCANNNNNTGC	1 cut(s)	742
BstC8I	GCNNGC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	684
BstF5I	GGATG	3 cut(s)	153, 223, 645
BstFNI	CGCG	4 cut(s)	10, 52, 54, 415
BstHHI	GCGC	4 cut(s)	54, 192, 266, 747
BstKTI	GATC	1 cut(s)	603
BstMBI	GATC	1 cut(s)	600
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	9 cut(s)	60, 77, 149, 187, 196, 330, 376, 518, 742
BstNI	CCWGG	2 cut(s)	84, 788
BstNSI	RCATGY	2 cut(s)	190, 745
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	6 cut(s)	82, 521, 531, 786, 791, 797
BstSLI	GKGCMC	2 cut(s)	183, 776
BstUI	CGCG	4 cut(s)	10, 52, 54, 415
BstV1I	GCAGC	3 cut(s)	311, 366, 457
BstXI	CCANNNNNNTGG	1 cut(s)	160
BstZI	CGGCCG	1 cut(s)	112
BsuRI	GGCC	7 cut(s)	88, 110, 114, 181, 786, 791, 797
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	3 cut(s)	153, 223, 645
Cac8I	GCNNGC	1 cut(s)	112
CfoI	GCGC	4 cut(s)	54, 192, 266, 747
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	4 cut(s)	86, 179, 180, 795
Csp6I	GTAC	2 cut(s)	91, 272
CviAII	CATG	3 cut(s)	60, 187, 742
CviQI	GTAC	2 cut(s)	91, 272
DdeI	CTNAG	1 cut(s)	684
DpnI	GATC	1 cut(s)	602
DpnII	GATC	1 cut(s)	600
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
EaeI	YGGCCR	2 cut(s)	112, 789
EagI	CGGCCG	1 cut(s)	112
Eam1104I	CTCTTC	2 cut(s)	242, 355
EarI	CTCTTC	2 cut(s)	242, 355
Ecl136II	GAGCTC	1 cut(s)	252
EclXI	CGGCCG	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	213
Eco24I	GRGCYC	4 cut(s)	145, 183, 254, 528
Eco52I	CGGCCG	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	455
Eco88I	CYCGRG	5 cut(s)	259, 371, 479, 488, 700
EcoICRI	GAGCTC	1 cut(s)	252
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	82, 786
EcoT14I	CCWWGG	1 cut(s)	213
EcoT38I	GRGCYC	4 cut(s)	145, 183, 254, 528
ErhI	CCWWGG	1 cut(s)	213
FaeI	CATG	3 cut(s)	63, 190, 745
FaiI	YATR	6 cut(s)	61, 174, 188, 209, 591, 743
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	59, 186, 741
FauI	CCCGC	2 cut(s)	57, 612
FblI	GTMKAC	1 cut(s)	287
Fnu4HI	GCNGC	5 cut(s)	115, 325, 380, 446, 629
FokI	GGATG	3 cut(s)	140, 230, 652
FriOI	GRGCYC	4 cut(s)	145, 183, 254, 528
FseI	GGCCGGCC	1 cut(s)	114
Fsp4HI	GCNGC	5 cut(s)	115, 325, 380, 446, 629
FspAI	RTGCGCAY	1 cut(s)	746
FspBI	CTAG	1 cut(s)	518
FspI	TGCGCA	2 cut(s)	191, 746
GlaI	GCGC	4 cut(s)	53, 191, 265, 746
GluI	GCNGC	5 cut(s)	115, 325, 380, 446, 629
GsaI	CCCAGC	2 cut(s)	445, 568
HaeIII	GGCC	7 cut(s)	88, 110, 114, 181, 786, 791, 797
HapII	CCGG	8 cut(s)	111, 255, 383, 522, 533, 632, 792, 798
HhaI	GCGC	4 cut(s)	54, 192, 266, 747
Hin1II	CATG	3 cut(s)	63, 190, 745
Hin6I	GCGC	4 cut(s)	52, 190, 264, 745
HinP1I	GCGC	4 cut(s)	52, 190, 264, 745
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HinfI	GANTC	8 cut(s)	28, 417, 475, 484, 514, 623, 675, 780
HpaII	CCGG	8 cut(s)	111, 255, 383, 522, 533, 632, 792, 798
Hpy166II	GTNNAC	3 cut(s)	288, 674, 732
Hpy188I	TCNGA	4 cut(s)	103, 309, 343, 474
Hpy188III	TCNNGA	2 cut(s)	481, 702
Hpy8I	GTNNAC	3 cut(s)	288, 674, 732
Hpy99I	CGWCG	5 cut(s)	130, 292, 295, 340, 368
HpyAV	CCTTC	2 cut(s)	606, 639
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	4 cut(s)	125, 303, 366, 618
HpyCH4V	TGCA	4 cut(s)	63, 327, 538, 667
HpyF10VI	GCNNNNNNNGC	9 cut(s)	60, 77, 149, 187, 196, 330, 376, 518, 742
HpyF3I	CTNAG	1 cut(s)	684
HpySE526I	ACGT	4 cut(s)	125, 303, 366, 618
Hsp92II	CATG	3 cut(s)	63, 190, 745
HspAI	GCGC	4 cut(s)	52, 190, 264, 745
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	600
LguI	GCTCTTC	2 cut(s)	242, 355
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	3 cut(s)	311, 366, 457
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	4 cut(s)	125, 303, 366, 618
MaeIII	GTNAC	1 cut(s)	200
MalI	GATC	1 cut(s)	602
MbiI	CCGCTC	1 cut(s)	117
MboI	GATC	1 cut(s)	600
MboII	GAAGA	4 cut(s)	259, 342, 394, 461
MhlI	GDGCHC	7 cut(s)	145, 183, 254, 350, 372, 528, 776
MluCI	AATT	3 cut(s)	40, 499, 571
MluI	ACGCGT	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	37, 523, 669
MnlI	CCTC	8 cut(s)	132, 385, 445, 618, 630, 649, 652, 655
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	546, 728
MseI	TTAA	2 cut(s)	135, 429
MspCI	CTTAAG	1 cut(s)	428
MspI	CCGG	8 cut(s)	111, 255, 383, 522, 533, 632, 792, 798
MspR9I	CCNGG	6 cut(s)	84, 523, 533, 788, 793, 799
MvaI	CCWGG	2 cut(s)	84, 788
MvnI	CGCG	4 cut(s)	10, 52, 54, 415
MwoI	GCNNNNNNNGC	9 cut(s)	60, 77, 149, 187, 196, 330, 376, 518, 742
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	4 cut(s)	523, 533, 793, 799
NdeII	GATC	1 cut(s)	600
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	3 cut(s)	63, 190, 745
NlaIV	GGNNCC	4 cut(s)	151, 181, 775, 796
NmuCI	GTSAC	1 cut(s)	200
NsbI	TGCGCA	2 cut(s)	191, 746
NspI	RCATGY	2 cut(s)	190, 745
PaeR7I	CTCGAG	2 cut(s)	259, 371
PasI	CCCWGGG	1 cut(s)	83
PciSI	GCTCTTC	2 cut(s)	242, 355
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 369
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	546, 728
PfeI	GAWTC	5 cut(s)	417, 475, 484, 623, 780
PkrI	GCNGC	5 cut(s)	116, 326, 381, 447, 630
PleI	GAGTC	3 cut(s)	36, 522, 669
PpsI	GAGTC	3 cut(s)	36, 522, 669
PshAI	GACNNNNGTC	1 cut(s)	9
Psp124BI	GAGCTC	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	82, 786
PspFI	CCCAGC	2 cut(s)	441, 564
PspGI	CCWGG	2 cut(s)	82, 786
PspN4I	GGNNCC	4 cut(s)	151, 181, 775, 796
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	4 cut(s)	86, 179, 180, 795
PspXI	VCTCGAGB	2 cut(s)	259, 371
RigI	GGCCGGCC	1 cut(s)	114
RsaI	GTAC	2 cut(s)	92, 273
RsaNI	GTAC	2 cut(s)	91, 272
SacI	GAGCTC	1 cut(s)	254
SalI	GTCGAC	1 cut(s)	286
SapI	GCTCTTC	2 cut(s)	242, 355
SaqAI	TTAA	2 cut(s)	135, 429
SatI	GCNGC	5 cut(s)	115, 325, 380, 446, 629
Sau3AI	GATC	1 cut(s)	600
Sau96I	GGNCC	4 cut(s)	86, 179, 180, 795
SchI	GAGTC	3 cut(s)	37, 523, 669
ScrFI	CCNGG	6 cut(s)	84, 523, 533, 788, 793, 799
SduI	GDGCHC	7 cut(s)	145, 183, 254, 350, 372, 528, 776
Sfr274I	CTCGAG	2 cut(s)	259, 371
SlaI	CTCGAG	2 cut(s)	259, 371
SmlI	CTYRAG	3 cut(s)	259, 371, 428
SmoI	CTYRAG	3 cut(s)	259, 371, 428
Sse9I	AATT	3 cut(s)	40, 499, 571
SsiI	CCGC	6 cut(s)	50, 54, 115, 413, 605, 629
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	254
StyD4I	CCNGG	6 cut(s)	82, 521, 531, 786, 791, 797
StyI	CCWWGG	1 cut(s)	213
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	4 cut(s)	128, 306, 369, 621
TaqI	TCGA	8 cut(s)	26, 119, 128, 260, 287, 372, 599, 722
TasI	AATT	3 cut(s)	40, 499, 571
TatI	WGTACW	1 cut(s)	271
TauI	GCSGC	2 cut(s)	117, 631
TfiI	GAWTC	5 cut(s)	417, 475, 484, 623, 780
Tru1I	TTAA	2 cut(s)	135, 429
Tru9I	TTAA	2 cut(s)	135, 429
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	324, 379, 445
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	2 cut(s)	48, 234
Vha464I	CTTAAG	1 cut(s)	428
XceI	RCATGY	2 cut(s)	190, 745
XhoI	CTCGAG	2 cut(s)	259, 371
XmiI	GTMKAC	1 cut(s)	287
XmnI	GAANNNNTTC	2 cut(s)	546, 728
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.