Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8388775.1

Orthogroup ID

OG0013797

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 1175

Gene Structure 1174 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8388775.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1174 bp

atggctaaagaccaactggatgtgttaaatgcacttgatgtggccaaaacacaatggtatcatttcacagcaattgtgattgctggcatgggattcttcactgatgcatatgatctgttctgcatctctcttgtcaccaaattactcggtcgcatatactaccaacaacatggttctgctgatcctggaagtctgccttcaaatgtctcagctgctgttaatggtgtggccttttgtggcacactttcaggccagctcttctttggttggctcggtgacaaattaggccgaaaacgtgtctatggaatggtcctgatggtcatggttttatgttccattgcctccggcctttcatttggtaaacaacctaaggctgttatttcgacactatgcttcttcaggttctggctaggctttggcattggtggtgactaccctctttctgctactatcatgtccgagtatgctaataaaaagactcgtggcgccttcattgctgctgtatttgcaatgcaaggtttcgggatcttggctggtggaatggttgcgataattgtatctacagttttcaaggagttatatcctgctccatcttatgcagctgatccagctgcctctattttcccagaagcagattatgcgtggcgaataattttgatgttcggtgcaatcccagctttgcttacttactattggcgtgccaaaatgcccgaaactgctcgatacactgccttggtttccaagaatgctaagaaggcagctgctgacatgtcaaaagttctgcaggttgaggtagaagcagaaccagagaaaatagaggaacgctcccaacaaggaagaaatgattttggtttattttcaaaggctttccttagtcgtcatggtcttcacttgcttgggactaccagcacttggttcttgctagacattgccttctacagtcagaatctattccaaaaggacatcttcagtgccattggttggatccctaaggcaaacaccatgagtgccatggaagaagtcttcaaaatttctagagcacagactctaattgctctctgcagcacagttccggggtattggttcacagtggcattcatagataggattgggaggttcacaattcaagtgatgggatttttcttcatgacagttttcatgtttgccttggcca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005315 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008509 GO:0015075 GO:0015291 GO:0015318 GO:0016020 GO:0016021 GO:0022804 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0098656 GO:1901683 GO:1901684

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

391

Amino Acids

43.17

Weight (kDa)

9.03

Isoelectric Point (pI)

31.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013797)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43340
fragaria_vesca	FvH4_4g03550
malus_domestica	MD13G1213500.v1.1 MD16G1217400.v1.1
prunus_persica	Prupe.1G038700_v2.0.a1
pyrus_communis	pycom16g18170
rosa_chinensis	RchiOBHm_Chr4g0392901
rosa_laevigata	RLG00000009783
rosa_multiflora	Rmu_co8388775.1_g000001 Rmu_sc0000498.1_g000079 Rmu_sc0008339.1_g000032
rosa_roxburghii	Rroxscaffold_5G00338010
rosa_rugosa	Rorug03G0341000
rosa_samantha	Rh4AG044700 Rh4BG040400 Rh4CG048100
rosa_wichuraiana	Rw4G003500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	775
AccB1I	GGYRCC	1 cut(s)	485
AccB7I	CCANNNNNTGG	2 cut(s)	912, 981
AclWI	GGATC	5 cut(s)	176, 533, 599, 979, 992
AcoI	YGGCCR	2 cut(s)	42, 1170
AcsI	RAATTY	1 cut(s)	1029
AcuI	CTGAAG	2 cut(s)	382, 952
AcyI	GRCGYC	1 cut(s)	486
AfiI	CCNNNNNNNGG	2 cut(s)	912, 981
AflIII	ACRYGT	2 cut(s)	295, 768
AgsI	TTSAA	5 cut(s)	201, 571, 861, 1027, 1127
AjnI	CCWGG	1 cut(s)	184
AluBI	AGCT	6 cut(s)	212, 256, 602, 611, 677, 761
AluI	AGCT	6 cut(s)	212, 256, 602, 611, 677, 761
Alw21I	GWGCWC	1 cut(s)	1042
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	5 cut(s)	176, 533, 599, 979, 992
AlwNI	CAGNNNCTG	3 cut(s)	215, 405, 764
AoxI	GGCC	6 cut(s)	42, 228, 250, 286, 346, 1170
ApeKI	GCWGC	7 cut(s)	212, 497, 599, 611, 758, 761, 1062
ApoI	RAATTY	1 cut(s)	1029
Asp700I	GAANNNNTTC	1 cut(s)	950
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	1074
AsuHPI	GGTGA	3 cut(s)	127, 287, 440
AvaII	GGWCC	1 cut(s)	310
AxyI	CCTNAGG	2 cut(s)	369, 990
BaeI	ACNNNNGTAYC	2 cut(s)	41, 74
BalI	TGGCCA	2 cut(s)	44, 1172
BamHI	GGATCC	1 cut(s)	984
BanI	GGYRCC	1 cut(s)	485
BauI	CACGAG	1 cut(s)	480
BbsI	GAAGAC	2 cut(s)	878, 1015
Bbv12I	GWGCWC	1 cut(s)	1042
BbvI	GCAGC	7 cut(s)	199, 484, 598, 611, 748, 770, 1074
BccI	CCATC	3 cut(s)	310, 598, 1126
BciT130I	CCWGG	1 cut(s)	186
BcnI	CCSGG	1 cut(s)	1074
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	3 cut(s)	410, 923, 1035
BfmI	CTRYAG	4 cut(s)	561, 782, 937, 1060
BfoI	RGCGCY	1 cut(s)	489
BfuAI	ACCTGC	1 cut(s)	775
BisI	GCNGC	7 cut(s)	213, 498, 600, 612, 759, 762, 1063
BlsI	GCNGC	7 cut(s)	214, 499, 601, 613, 760, 763, 1064
Bme1390I	CCNGG	2 cut(s)	186, 1074
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	310
BmiI	GGNNCC	2 cut(s)	487, 986
BmrFI	CCNGG	2 cut(s)	186, 1074
BmsI	GCATC	2 cut(s)	94, 132
BpiI	GAAGAC	2 cut(s)	878, 1015
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpuMI	CCSGG	1 cut(s)	1074
BsaHI	GRCGYC	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	732, 1011, 1073, 1167
Bsc4I	CCNNNNNNNGG	2 cut(s)	912, 981
Bse1I	ACTGG	1 cut(s)	21
Bse21I	CCTNAGG	2 cut(s)	369, 990
Bse3DI	GCAATG	4 cut(s)	336, 492, 516, 927
BseBI	CCWGG	1 cut(s)	186
BseDI	CCNNGG	4 cut(s)	732, 1011, 1073, 1167
BseGI	GGATG	1 cut(s)	25
BseLI	CCNNNNNNNGG	2 cut(s)	912, 981
BseMI	GCAATG	4 cut(s)	336, 492, 516, 927
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	21
BseXI	GCAGC	7 cut(s)	199, 484, 598, 611, 748, 770, 1074
BseYI	CCCAGC	1 cut(s)	673
Bsh1285I	CGRYCG	1 cut(s)	151
BshFI	GGCC	6 cut(s)	44, 230, 252, 288, 348, 1172
BshNI	GGYRCC	1 cut(s)	485
BsiEI	CGRYCG	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	1042
BsiSI	CCGG	2 cut(s)	345, 1073
BslFI	GGGAC	1 cut(s)	913
BslI	CCNNNNNNNGG	2 cut(s)	912, 981
BsmAI	GTCTC	1 cut(s)	211
BsmFI	GGGAC	1 cut(s)	913
BsmI	GAATGC	2 cut(s)	751, 1094
BsnI	GGCC	6 cut(s)	44, 230, 252, 288, 348, 1172
Bsp1286I	GDGCHC	1 cut(s)	1042
Bsp143I	GATC	5 cut(s)	112, 181, 525, 604, 984
Bsp19I	CCATGG	1 cut(s)	1011
BspANI	GGCC	6 cut(s)	44, 230, 252, 288, 348, 1172
BspCNI	CTCAG	1 cut(s)	221
BspHI	TCATGA	1 cut(s)	1146
BspLI	GGNNCC	2 cut(s)	487, 986
BspMAI	CTGCAG	2 cut(s)	786, 1064
BspMI	ACCTGC	1 cut(s)	775
BspPI	GGATC	5 cut(s)	176, 533, 599, 979, 992
BspQI	GCTCTTC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	485
BsrDI	GCAATG	4 cut(s)	336, 492, 516, 927
BsrI	ACTGG	1 cut(s)	21
BssECI	CCNNGG	4 cut(s)	732, 1011, 1073, 1167
BssMI	GATC	5 cut(s)	112, 181, 525, 604, 984
BssNI	GRCGYC	1 cut(s)	486
BssSI	CACGAG	1 cut(s)	480
BssT1I	CCWWGG	3 cut(s)	732, 1011, 1167
Bst2BI	CACGAG	1 cut(s)	480
Bst2UI	CCWGG	1 cut(s)	186
Bst4CI	ACNGT	5 cut(s)	565, 941, 1069, 1090, 1153
Bst6I	CTCTTC	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	486
BstAPI	GCANNNNNTGC	1 cut(s)	638
BstC8I	GCNNGC	3 cut(s)	85, 254, 699
BstDEI	CTNAG	5 cut(s)	208, 369, 750, 872, 990
BstDSI	CCRYGG	1 cut(s)	1011
BstF5I	GGATG	1 cut(s)	25
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	5 cut(s)	115, 184, 528, 607, 987
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	5 cut(s)	112, 181, 525, 604, 984
BstMCI	CGRYCG	1 cut(s)	151
BstMWI	GCNNNNNNNGC	6 cut(s)	494, 506, 608, 638, 674, 755
BstNI	CCWGG	1 cut(s)	186
BstNSI	RCATGY	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	184, 1072
BstSFI	CTRYAG	4 cut(s)	561, 782, 937, 1060
BstV1I	GCAGC	7 cut(s)	199, 484, 598, 611, 748, 770, 1074
BstV2I	GAAGAC	2 cut(s)	878, 1015
BstX2I	RGATCY	2 cut(s)	525, 984
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	2 cut(s)	525, 984
Bsu36I	CCTNAGG	2 cut(s)	369, 990
BsuRI	GGCC	6 cut(s)	44, 230, 252, 288, 348, 1172
BtgI	CCRYGG	1 cut(s)	1011
BtsCI	GGATG	1 cut(s)	25
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	4 cut(s)	99, 726, 976, 1095
BveI	ACCTGC	1 cut(s)	775
Cac8I	GCNNGC	3 cut(s)	85, 254, 699
CaiI	CAGNNNCTG	3 cut(s)	215, 405, 764
CciI	TCATGA	1 cut(s)	1146
CfoI	GCGC	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	310
DdeI	CTNAG	5 cut(s)	208, 369, 750, 872, 990
DinI	GGCGCC	1 cut(s)	487
DpnI	GATC	5 cut(s)	114, 183, 527, 606, 986
DpnII	GATC	5 cut(s)	112, 181, 525, 604, 984
EaeI	YGGCCR	2 cut(s)	42, 1170
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
Eco130I	CCWWGG	3 cut(s)	732, 1011, 1167
Eco47I	GGWCC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	382, 952
Eco81I	CCTNAGG	2 cut(s)	369, 990
EcoRII	CCWGG	1 cut(s)	184
EcoT14I	CCWWGG	3 cut(s)	732, 1011, 1167
EcoT22I	ATGCAT	1 cut(s)	109
EgeI	GGCGCC	1 cut(s)	487
EheI	GGCGCC	1 cut(s)	487
ErhI	CCWWGG	3 cut(s)	732, 1011, 1167
FalI	AAGNNNNNCTT	4 cut(s)	181, 213, 950, 982
FaqI	GGGAC	1 cut(s)	913
FauNDI	CATATG	1 cut(s)	109
Fnu4HI	GCNGC	7 cut(s)	213, 498, 600, 612, 759, 762, 1063
FokI	GGATG	1 cut(s)	32
Fsp4HI	GCNGC	7 cut(s)	213, 498, 600, 612, 759, 762, 1063
FspBI	CTAG	3 cut(s)	410, 923, 1035
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	7 cut(s)	213, 498, 600, 612, 759, 762, 1063
GsaI	CCCAGC	1 cut(s)	677
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	6 cut(s)	44, 230, 252, 288, 348, 1172
HapII	CCGG	2 cut(s)	345, 1073
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	486
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HinfI	GANTC	4 cut(s)	93, 478, 946, 1045
HpaII	CCGG	2 cut(s)	345, 1073
HphI	GGTGA	3 cut(s)	127, 287, 440
Hpy166II	GTNNAC	3 cut(s)	362, 1086, 1119
Hpy188I	TCNGA	2 cut(s)	460, 945
Hpy188III	TCNNGA	4 cut(s)	313, 523, 1035, 1147
Hpy8I	GTNNAC	3 cut(s)	362, 1086, 1119
HpyAV	CCTTC	4 cut(s)	207, 499, 748, 943
HpyCH4III	ACNGT	5 cut(s)	565, 941, 1069, 1090, 1153
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	9 cut(s)	32, 107, 123, 509, 514, 599, 668, 784, 1062
HpyF10VI	GCNNNNNNNGC	6 cut(s)	494, 506, 608, 638, 674, 755
HpyF3I	CTNAG	5 cut(s)	208, 369, 750, 872, 990
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	1 cut(s)	486
HspAI	GCGC	1 cut(s)	486
KasI	GGCGCC	1 cut(s)	485
Kzo9I	GATC	5 cut(s)	112, 181, 525, 604, 984
LguI	GCTCTTC	1 cut(s)	263
LmnI	GCTCC	2 cut(s)	592, 830
Lsp1109I	GCAGC	7 cut(s)	199, 484, 598, 611, 748, 770, 1074
LweI	GCATC	2 cut(s)	94, 132
MaeI	CTAG	3 cut(s)	410, 923, 1035
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	3 cut(s)	133, 275, 428
MalI	GATC	5 cut(s)	114, 183, 527, 606, 986
MboI	GATC	5 cut(s)	112, 181, 525, 604, 984
MboII	GAAGA	9 cut(s)	88, 250, 388, 849, 878, 958, 1015, 1028, 1135
MfeI	CAATTG	1 cut(s)	72
MflI	RGATCY	2 cut(s)	525, 984
MhlI	GDGCHC	1 cut(s)	1042
MlsI	TGGCCA	2 cut(s)	44, 1172
MluCI	AATT	8 cut(s)	72, 140, 281, 552, 651, 1029, 1050, 1122
MluNI	TGGCCA	2 cut(s)	44, 1172
Mly113I	GGCGCC	1 cut(s)	486
MlyI	GAGTC	2 cut(s)	472, 1039
MmeI	TCCRAC	1 cut(s)	962
MnlI	CCTC	6 cut(s)	352, 447, 625, 784, 811, 1107
Mox20I	TGGCCA	2 cut(s)	44, 1172
Mph1103I	ATGCAT	1 cut(s)	109
MroXI	GAANNNNTTC	1 cut(s)	950
MscI	TGGCCA	2 cut(s)	44, 1172
MseI	TTAA	2 cut(s)	26, 219
Msp20I	TGGCCA	2 cut(s)	44, 1172
MspA1I	CMGCKG	4 cut(s)	212, 602, 611, 761
MspI	CCGG	2 cut(s)	345, 1073
MspR9I	CCNGG	2 cut(s)	186, 1074
MunI	CAATTG	1 cut(s)	72
Mva1269I	GAATGC	2 cut(s)	751, 1094
MvaI	CCWGG	1 cut(s)	186
MwoI	GCNNNNNNNGC	6 cut(s)	494, 506, 608, 638, 674, 755
NarI	GGCGCC	1 cut(s)	486
NciI	CCSGG	1 cut(s)	1074
NcoI	CCATGG	1 cut(s)	1011
NdeI	CATATG	1 cut(s)	109
NdeII	GATC	5 cut(s)	112, 181, 525, 604, 984
NlaIV	GGNNCC	2 cut(s)	487, 986
NmuCI	GTSAC	3 cut(s)	133, 275, 428
NsiI	ATGCAT	1 cut(s)	109
NspI	RCATGY	1 cut(s)	772
PagI	TCATGA	1 cut(s)	1146
PciI	ACATGT	1 cut(s)	768
PciSI	GCTCTTC	1 cut(s)	263
PctI	GAATGC	2 cut(s)	751, 1094
PdmI	GAANNNNTTC	1 cut(s)	950
PfeI	GAWTC	2 cut(s)	93, 946
PflMI	CCANNNNNTGG	2 cut(s)	912, 981
PfoI	TCCNGGA	1 cut(s)	184
PkrI	GCNGC	7 cut(s)	214, 499, 601, 613, 760, 763, 1064
PleI	GAGTC	2 cut(s)	472, 1039
PluTI	GGCGCC	1 cut(s)	489
PpsI	GAGTC	2 cut(s)	472, 1039
PscI	ACATGT	1 cut(s)	768
Psp6I	CCWGG	1 cut(s)	184
PspFI	CCCAGC	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	184
PspN4I	GGNNCC	2 cut(s)	487, 986
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	2 cut(s)	786, 1064
PstNI	CAGNNNCTG	3 cut(s)	215, 405, 764
PsuI	RGATCY	2 cut(s)	525, 984
PvuII	CAGCTG	4 cut(s)	212, 602, 611, 761
SapI	GCTCTTC	1 cut(s)	263
SaqAI	TTAA	2 cut(s)	26, 219
SatI	GCNGC	7 cut(s)	213, 498, 600, 612, 759, 762, 1063
Sau3AI	GATC	5 cut(s)	112, 181, 525, 604, 984
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	472, 1039
ScrFI	CCNGG	2 cut(s)	186, 1074
SduI	GDGCHC	1 cut(s)	1042
SfaNI	GCATC	2 cut(s)	94, 132
SfcI	CTRYAG	4 cut(s)	561, 782, 937, 1060
SfoI	GGCGCC	1 cut(s)	487
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	8 cut(s)	72, 140, 281, 552, 651, 1029, 1050, 1122
SspDI	GGCGCC	1 cut(s)	485
SspMI	CTAG	3 cut(s)	410, 923, 1035
StyD4I	CCNGG	2 cut(s)	184, 1072
StyI	CCWWGG	3 cut(s)	732, 1011, 1167
TaaI	ACNGT	5 cut(s)	565, 941, 1069, 1090, 1153
TaiI	ACGT	1 cut(s)	298
TaqI	TCGA	2 cut(s)	383, 721
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	8 cut(s)	72, 140, 281, 552, 651, 1029, 1050, 1122
TfiI	GAWTC	2 cut(s)	93, 946
Tru1I	TTAA	2 cut(s)	26, 219
Tru9I	TTAA	2 cut(s)	26, 219
TscAI	CASTG	4 cut(s)	106, 733, 976, 1095
TseFI	GTSAC	3 cut(s)	133, 275, 428
TseI	GCWGC	7 cut(s)	212, 497, 599, 611, 758, 761, 1062
Tsp45I	GTSAC	3 cut(s)	133, 275, 428
TspDTI	ATGAA	5 cut(s)	342, 481, 1087, 1135, 1147
TspRI	CASTG	4 cut(s)	106, 733, 976, 1095
Van91I	CCANNNNNTGG	2 cut(s)	912, 981
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	1029
XbaI	TCTAGA	1 cut(s)	1034
XceI	RCATGY	1 cut(s)	772
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 1009
XmnI	GAANNNNTTC	1 cut(s)	950
XspI	CTAG	3 cut(s)	410, 923, 1035
Zsp2I	ATGCAT	1 cut(s)	109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.