Rmu_co8398525.1_g000001

Belongs to the hexokinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8398525.1
OG0011448
Physical Location & Seq
Forward (+)
706 .. 993
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8398525.1_g000001.1.cds

Sequence Viewer

Length: 288 bp
atgtcagttacagctgccacgtcaccgtcggtcggatccttccacccatcatgtcgccgatcaacgaggccggcggccctccctcgattcaggatgagcgtccgatctactgccgtttctgtcactcctctggtgactgagttacgcaaggactgtgcaactcctctgcccctgctccgccacgtggcggacgccatggccgccgacatgcgcgctggtctcgccgtggaaggcgggagtgatctcaagatgatactcagctacgttgatagcctcccgactgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003824 GO:0004340 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0032787 GO:0033500 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048878 GO:0051156 GO:0051186 GO:0051188 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230
Pfam Domains
Protein Families
Hexokinase_1 Hexokinase_2

Protein Analysis

95

Amino Acids

10.01

Weight (kDa)

9.83

Isoelectric Point (pI)

64.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47840 AT1G47840
fragaria_vesca FvH4_2g38530 FvH4_2g38530 FvH4_2g38530
malus_domestica MD15G1012900.v1.1
prunus_persica Prupe.1G366000_v2.0.a1 Prupe.1G366000_v2.0.a1
pyrus_communis pycom15g01120
rosa_chinensis RchiOBHm_Chr6g0302781
rosa_laevigata RLG00000011138
rosa_multiflora Rmu_co8398525.1_g000001 Rmu_ssc0000460.1_g000004
rosa_roxburghii Rroxscaffold_7G00165330
rosa_rugosa Rorug06G0316900
rosa_samantha Rh6AG430300 Rh6BG472300 Rh6CG442800 Rh6DG429500
rosa_wichuraiana Rw6G037270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 213
AciI CCGC 5 cut(s) 74, 178, 188, 201, 234
AclWI GGATC 2 cut(s) 30, 43
AcoI YGGCCR 1 cut(s) 198
AcvI CACGTG 1 cut(s) 184
AcyI GRCGYC 1 cut(s) 192
AfiI CCNNNNNNNGG 3 cut(s) 32, 184, 187
AjiI CACGTC 1 cut(s) 21
AluBI AGCT 2 cut(s) 14, 261
AluI AGCT 2 cut(s) 14, 261
Alw26I GTCTC 1 cut(s) 224
AlwI GGATC 2 cut(s) 30, 43
AoxI GGCC 3 cut(s) 68, 75, 198
ApeKI GCWGC 1 cut(s) 14
AspLEI GCGC 2 cut(s) 213, 215
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 2 cut(s) 15, 145
BamHI GGATCC 1 cut(s) 35
BbrPI CACGTG 1 cut(s) 184
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 98, 209
BcoDI GTCTC 1 cut(s) 224
BisI GCNGC 3 cut(s) 15, 75, 201
BlsI GCNGC 3 cut(s) 16, 76, 202
BmgBI CACGTC 1 cut(s) 21
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 230
BsaAI YACGTR 1 cut(s) 184
BsaHI GRCGYC 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 195, 225
Bsc4I CCNNNNNNNGG 3 cut(s) 32, 184, 187
Bse118I RCCGGY 1 cut(s) 70
Bse1I ACTGG 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 195, 225
BseGI GGATG 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 32, 184, 187
BseMII CTCAG 2 cut(s) 129, 271
BseNI ACTGG 1 cut(s) 286
BsePI GCGCGC 1 cut(s) 211
BseRI GAGGAG 2 cut(s) 117, 153
Bsh1236I CGCG 1 cut(s) 213
Bsh1285I CGRYCG 1 cut(s) 33
BshFI GGCC 3 cut(s) 70, 77, 200
BsiEI CGRYCG 1 cut(s) 33
BsiSI CCGG 1 cut(s) 71
BslI CCNNNNNNNGG 3 cut(s) 32, 184, 187
BsmAI GTCTC 1 cut(s) 224
BsnI GGCC 3 cut(s) 70, 77, 200
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 35, 59, 104, 241
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 5 cut(s) 74, 178, 188, 201, 234
BspANI GGCC 3 cut(s) 70, 77, 200
BspCNI CTCAG 2 cut(s) 130, 270
BspFNI CGCG 1 cut(s) 213
BspLI GGNNCC 1 cut(s) 37
BspPI GGATC 2 cut(s) 30, 43
BspTNI GGTCTC 1 cut(s) 224
BsrFI RCCGGY 1 cut(s) 70
BsrI ACTGG 1 cut(s) 286
BssAI RCCGGY 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 195, 225
BssHII GCGCGC 1 cut(s) 211
BssMI GATC 4 cut(s) 35, 59, 104, 241
BssNI GRCGYC 1 cut(s) 192
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 27, 155
BstACI GRCGYC 1 cut(s) 192
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 2 cut(s) 72, 213
BstDEI CTNAG 2 cut(s) 138, 257
BstDSI CCRYGG 2 cut(s) 195, 225
BstF5I GGATG 1 cut(s) 99
BstFNI CGCG 1 cut(s) 213
BstHHI GCGC 2 cut(s) 213, 215
BstKTI GATC 4 cut(s) 38, 62, 107, 244
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 4 cut(s) 35, 59, 104, 241
BstMCI CGRYCG 1 cut(s) 33
BstMWI GCNNNNNNNGC 2 cut(s) 200, 221
BstNSI RCATGY 1 cut(s) 211
BstUI CGCG 1 cut(s) 213
BstX2I RGATCY 1 cut(s) 35
BstYI RGATCY 1 cut(s) 35
BsuRI GGCC 3 cut(s) 70, 77, 200
BtgI CCRYGG 2 cut(s) 195, 225
BtrI CACGTC 1 cut(s) 21
BtsCI GGATG 1 cut(s) 99
Cac8I GCNNGC 2 cut(s) 72, 213
CfoI GCGC 2 cut(s) 213, 215
Cfr10I RCCGGY 1 cut(s) 70
Cfr13I GGNCC 1 cut(s) 76
CseI GACGC 2 cut(s) 88, 200
CviAII CATG 3 cut(s) 51, 196, 208
CviJI RGCY 6 cut(s) 14, 70, 77, 200, 261, 273
CviKI_1 RGCY 6 cut(s) 14, 70, 77, 200, 261, 273
DdeI CTNAG 2 cut(s) 138, 257
DpnI GATC 4 cut(s) 37, 61, 106, 243
DpnII GATC 4 cut(s) 35, 59, 104, 241
EaeI YGGCCR 1 cut(s) 198
EciI GGCGGA 2 cut(s) 167, 203
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 224
Eco72I CACGTG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 3 cut(s) 54, 199, 211
FaiI YATR 3 cut(s) 52, 197, 209
FatI CATG 3 cut(s) 50, 195, 207
FauI CCCGC 1 cut(s) 227
Fnu4HI GCNGC 3 cut(s) 15, 75, 201
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 3 cut(s) 15, 75, 201
GlaI GCGC 2 cut(s) 212, 214
GluI GCNGC 3 cut(s) 15, 75, 201
HaeIII GGCC 3 cut(s) 70, 77, 200
HapII CCGG 1 cut(s) 71
HgaI GACGC 2 cut(s) 88, 200
HhaI GCGC 2 cut(s) 213, 215
Hin1I GRCGYC 1 cut(s) 192
Hin1II CATG 3 cut(s) 54, 199, 211
Hin6I GCGC 2 cut(s) 211, 213
HinP1I GCGC 2 cut(s) 211, 213
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 71
HphI GGTGA 2 cut(s) 15, 145
Hpy188I TCNGA 2 cut(s) 35, 104
Hpy188III TCNNGA 3 cut(s) 91, 247, 277
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 2 cut(s) 49, 224
HpyCH4III ACNGT 2 cut(s) 27, 155
HpyCH4IV ACGT 3 cut(s) 20, 183, 264
HpyCH4V TGCA 1 cut(s) 158
HpyF10VI GCNNNNNNNGC 2 cut(s) 200, 221
HpyF3I CTNAG 2 cut(s) 138, 257
HpySE526I ACGT 3 cut(s) 20, 183, 264
Hsp92I GRCGYC 1 cut(s) 192
Hsp92II CATG 3 cut(s) 54, 199, 211
HspAI GCGC 2 cut(s) 211, 213
KroI GCCGGC 1 cut(s) 70
KroNI GCCGGC 1 cut(s) 72
Kzo9I GATC 4 cut(s) 35, 59, 104, 241
LmnI GCTCC 1 cut(s) 180
LpnPI CCDG 6 cut(s) 76, 84, 116, 185, 201, 267
MaeII ACGT 3 cut(s) 20, 183, 264
MaeIII GTNAC 5 cut(s) 7, 21, 121, 133, 141
MalI GATC 4 cut(s) 37, 61, 106, 243
MboI GATC 4 cut(s) 35, 59, 104, 241
MflI RGATCY 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 6 cut(s) 60, 89, 93, 138, 174, 284
MroNI GCCGGC 1 cut(s) 70
MspA1I CMGCKG 1 cut(s) 14
MspI CCGG 1 cut(s) 71
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 2 cut(s) 200, 221
NaeI GCCGGC 1 cut(s) 72
NcoI CCATGG 1 cut(s) 195
NdeII GATC 4 cut(s) 35, 59, 104, 241
NgoMIV GCCGGC 1 cut(s) 70
NlaIII CATG 3 cut(s) 54, 199, 211
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 3 cut(s) 21, 121, 133
NspI RCATGY 1 cut(s) 211
PauI GCGCGC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 72
PfeI GAWTC 1 cut(s) 87
PkrI GCNGC 3 cut(s) 16, 76, 202
PmaCI CACGTG 1 cut(s) 184
PmlI CACGTG 1 cut(s) 184
Ppu21I YACGTR 1 cut(s) 184
PspCI CACGTG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 35
PteI GCGCGC 1 cut(s) 211
PvuII CAGCTG 1 cut(s) 14
SatI GCNGC 3 cut(s) 15, 75, 201
Sau3AI GATC 4 cut(s) 35, 59, 104, 241
Sau96I GGNCC 1 cut(s) 76
SetI ASST 5 cut(s) 16, 23, 186, 263, 267
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
SsiI CCGC 5 cut(s) 74, 178, 188, 201, 234
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 27, 155
TaiI ACGT 3 cut(s) 23, 186, 267
TaqI TCGA 1 cut(s) 85
TaqII GACCGA 1 cut(s) 19
TauI GCSGC 2 cut(s) 77, 203
TfiI GAWTC 1 cut(s) 87
TseFI GTSAC 3 cut(s) 21, 121, 133
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 3 cut(s) 21, 121, 133
XceI RCATGY 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.