Rorug06G0316900

Belongs to the hexokinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0011448
Physical Location & Seq
Reverse (-)
46838826 .. 46839179
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0316900.1

Sequence Viewer

Length: 354 bp
ATGACTTTTATCAATGCAGAAGATTCGGAATCGATAAGTAGCAATGAGCCTCTACCAGATGAGGTCCCTCTGCAGCTGGCGGACACACCGGGGTCCTTTCTTAAGTCTCTGGGTTTGGAACCACCGATTCCACCAGCTGCTACTTCGTGGTCAGATAACCCTAAGCCTAGGGCCTCAGGAGGCCTGCCAAAGAAAAAGAAGACAAGCAGTACCGGTCAGAATCCACAATCAGCGAGGAGTACGAAAGTAGCTACTCCGACGAGGAAGAGAAAGCCAGCCCCAGACCCAAAGAAGTGGGTTCCGCTGGCTTACAGGGAAAGAAAGAAAGATGACTTCATCTATTTTTTTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001678 GO:0003674 GO:0003824 GO:0004340 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0032787 GO:0033500 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048878 GO:0051156 GO:0051186 GO:0051188 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0090407 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00051 ko00052 ko00500 ko00520 ko00521 ko00524 ko01100 ko01110 ko01120 ko01130 ko01200 ko04066 ko04910 ko04930 ko04973 ko05230 map00010 map00051 map00052 map00500 map00520 map00521 map00524 map01100 map01110 map01120 map01130 map01200 map04066 map04910 map04930 map04973 map05230
Pfam Domains
Protein Families
Hexokinase_1 Hexokinase_2

Protein Analysis

117

Amino Acids

12.91

Weight (kDa)

9.77

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G47840 AT1G47840
fragaria_vesca FvH4_2g38530 FvH4_2g38530 FvH4_2g38530
malus_domestica MD15G1012900.v1.1
prunus_persica Prupe.1G366000_v2.0.a1 Prupe.1G366000_v2.0.a1
pyrus_communis pycom15g01120
rosa_chinensis RchiOBHm_Chr6g0302781
rosa_laevigata RLG00000011138
rosa_multiflora Rmu_co8398525.1_g000001 Rmu_ssc0000460.1_g000004
rosa_roxburghii Rroxscaffold_7G00165330
rosa_rugosa Rorug06G0316900
rosa_samantha Rh6AG430300 Rh6BG472300 Rh6CG442800 Rh6DG429500
rosa_wichuraiana Rw6G037270

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 80, 302
AfaI GTAC 2 cut(s) 211, 241
AflII CTTAAG 1 cut(s) 101
AgeI ACCGGT 1 cut(s) 212
AluBI AGCT 3 cut(s) 76, 137, 251
AluI AGCT 3 cut(s) 76, 137, 251
Alw26I GTCTC 1 cut(s) 111
AoxI GGCC 2 cut(s) 171, 181
ApeKI GCWGC 2 cut(s) 73, 137
AsiGI ACCGGT 1 cut(s) 212
AspA2I CCTAGG 1 cut(s) 167
AspS9I GGNCC 3 cut(s) 64, 93, 171
AsuC2I CCSGG 1 cut(s) 90
AvaII GGWCC 2 cut(s) 64, 93
AvrII CCTAGG 1 cut(s) 167
AxyI CCTNAGG 1 cut(s) 175
BbsI GAAGAC 1 cut(s) 206
BbvI GCAGC 2 cut(s) 85, 124
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 111
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 71
BfrI CTTAAG 1 cut(s) 101
BisI GCNGC 2 cut(s) 74, 138
BlnI CCTAGG 1 cut(s) 167
BlsI GCNGC 2 cut(s) 75, 139
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 2 cut(s) 64, 93
BmgT120I GGNCC 3 cut(s) 64, 93, 171
BmiI GGNNCC 4 cut(s) 66, 94, 120, 300
BmrFI CCNGG 1 cut(s) 90
BpiI GAAGAC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 90
Bsa29I ATCGAT 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 89, 167
BsaWI WCCGGW 1 cut(s) 212
Bse118I RCCGGY 1 cut(s) 212
Bse21I CCTNAGG 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 49
BseCI ATCGAT 1 cut(s) 32
BseDI CCNNGG 2 cut(s) 89, 167
BseMI GCAATG 1 cut(s) 49
BseMII CTCAG 1 cut(s) 189
BseRI GAGGAG 1 cut(s) 250
BseXI GCAGC 2 cut(s) 85, 124
BshFI GGCC 2 cut(s) 173, 183
BshTI ACCGGT 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 32
BsiSI CCGG 2 cut(s) 89, 213
BslFI GGGAC 1 cut(s) 50
BsmAI GTCTC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 50
BsnI GGCC 2 cut(s) 173, 183
BspACI CCGC 2 cut(s) 80, 302
BspANI GGCC 2 cut(s) 173, 183
BspCNI CTCAG 1 cut(s) 188
BspDI ATCGAT 1 cut(s) 32
BspLI GGNNCC 4 cut(s) 66, 94, 120, 300
BspMAI CTGCAG 1 cut(s) 75
BspTI CTTAAG 1 cut(s) 101
BsrDI GCAATG 1 cut(s) 49
BsrFI RCCGGY 1 cut(s) 212
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 2 cut(s) 89, 167
BssT1I CCWWGG 1 cut(s) 167
Bst6I CTCTTC 1 cut(s) 260
BstAFI CTTAAG 1 cut(s) 101
BstC8I GCNNGC 4 cut(s) 78, 185, 276, 306
BstDEI CTNAG 2 cut(s) 162, 175
BstMAI GTCTC 1 cut(s) 111
BstSCI CCNGG 1 cut(s) 88
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 2 cut(s) 85, 124
BstV2I GAAGAC 1 cut(s) 206
BstXI CCANNNNNNTGG 1 cut(s) 294
Bsu15I ATCGAT 1 cut(s) 32
Bsu36I CCTNAGG 1 cut(s) 175
BsuRI GGCC 2 cut(s) 173, 183
BsuTUI ATCGAT 1 cut(s) 32
Cac8I GCNNGC 4 cut(s) 78, 185, 276, 306
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 3 cut(s) 64, 93, 171
ClaI ATCGAT 1 cut(s) 32
Csp6I GTAC 2 cut(s) 210, 240
CspAI ACCGGT 1 cut(s) 212
CviQI GTAC 2 cut(s) 210, 240
DdeI CTNAG 2 cut(s) 162, 175
DraI TTTAAA 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 260
EarI CTCTTC 1 cut(s) 260
EciI GGCGGA 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 167
Eco147I AGGCCT 1 cut(s) 183
Eco47I GGWCC 2 cut(s) 64, 93
Eco81I CCTNAGG 1 cut(s) 175
EcoO109I RGGNCCY 3 cut(s) 64, 93, 171
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaqI GGGAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 74, 138
Fsp4HI GCNGC 2 cut(s) 74, 138
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 74, 138
HaeIII GGCC 2 cut(s) 173, 183
HapII CCGG 2 cut(s) 89, 213
HinfI GANTC 4 cut(s) 23, 29, 127, 220
HpaII CCGG 2 cut(s) 89, 213
Hpy188I TCNGA 4 cut(s) 28, 154, 219, 258
Hpy188III TCNNGA 1 cut(s) 177
Hpy99I CGWCG 1 cut(s) 262
HpyCH4V TGCA 2 cut(s) 17, 73
HpyF3I CTNAG 2 cut(s) 162, 175
Lsp1109I GCAGC 2 cut(s) 85, 124
MaeI CTAG 1 cut(s) 168
MboII GAAGA 3 cut(s) 32, 211, 277
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 7 cut(s) 55, 60, 78, 173, 184, 228, 255
MseI TTAA 2 cut(s) 102, 348
MspA1I CMGCKG 3 cut(s) 76, 137, 304
MspCI CTTAAG 1 cut(s) 101
MspI CCGG 2 cut(s) 89, 213
MspR9I CCNGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 90
NlaIV GGNNCC 4 cut(s) 66, 94, 120, 300
PceI AGGCCT 1 cut(s) 183
PfeI GAWTC 4 cut(s) 23, 29, 127, 220
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 2 cut(s) 75, 139
PpuMI RGGWCCY 2 cut(s) 64, 93
Psp5II RGGWCCY 2 cut(s) 64, 93
PspN4I GGNNCC 4 cut(s) 66, 94, 120, 300
PspPI GGNCC 3 cut(s) 64, 93, 171
PspPPI RGGWCCY 2 cut(s) 64, 93
PstI CTGCAG 1 cut(s) 75
PvuII CAGCTG 2 cut(s) 76, 137
RsaI GTAC 2 cut(s) 211, 241
RsaNI GTAC 2 cut(s) 210, 240
SaqAI TTAA 2 cut(s) 102, 348
SatI GCNGC 2 cut(s) 74, 138
Sau96I GGNCC 3 cut(s) 64, 93, 171
ScrFI CCNGG 1 cut(s) 90
SetI ASST 4 cut(s) 66, 78, 139, 253
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 2 cut(s) 64, 93
SmlI CTYRAG 1 cut(s) 101
SmoI CTYRAG 1 cut(s) 101
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 2 cut(s) 80, 302
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 88
StyI CCWWGG 1 cut(s) 167
TaqI TCGA 1 cut(s) 32
TfiI GAWTC 4 cut(s) 23, 29, 127, 220
Tru1I TTAA 2 cut(s) 102, 348
Tru9I TTAA 2 cut(s) 102, 348
TseI GCWGC 2 cut(s) 73, 137
TspDTI ATGAA 1 cut(s) 325
Vha464I CTTAAG 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 64, 93
XmaJI CCTAGG 1 cut(s) 167
XspI CTAG 1 cut(s) 168
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.