Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8426227.1

Orthogroup ID

OG0015848

Physical Location & Seq

Genomic Coordinates Reverse (-)

198 .. 1253

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8426227.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

atgttccaagcctttctaaggatcactgtgacctgcgcagtaggtgttggtgctgttgccctgggacttggcactgcatctgggtatatctctccatggacaggccggttttattctttgcttgatccaacatacgcaaaggatcacattccaattattgcatctgtctctgagcatcagccaacggcgtggtcatcttttatgtttgatttccatatcttactcttcctcttccctgctggtctctacttttgcttcaagcgattgtctgatgcgacgatatttatagttatgtatggccttacaagcatgtatttcgctggtgtcatggttcggttaattcttgttgccacacctgctgtttgtctcataagtgccattgctgtctctgcgactataaagaatttgacacagttggtaagggcgaaggacaaggttccccagactggttctaccaaaggagccagtagtgcaaagggttcttctaagggttcaattgatcactctcagccttttcaaaaaaatggtgctattgccttactttttggtgcattttacttgcttagcaagtatgcaacccattgtacctgggtcacatctgaggcatactcgtctccatcaattgtcctggctgcaaggggtgctcatgggaacagggtcatttttgatgattatcgtgaggcatacttttggcttcgtcagaatactcctccggatgctaaagtgatgtcatggtgggattatggctaccaaatcacggcaatgggaaatagaactgttatagttgacaataacacctggaacaatacacacattgctaccgttgggcgtgcaatgtcatcttatgaagatgaggcatatgatataatgagatctcttgacgtggattatgttctagttgtgtttggtggtgttactggttattcttctgatgatattaacaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

315

Amino Acids

34.63

Weight (kDa)

8.24

Isoelectric Point (pI)

31.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34130
fragaria_vesca	FvH4_5g18380 FvH4_5g18380
malus_domestica	MD06G1239500.v1.1 MD14G1245500.v1.1
prunus_persica	Prupe.5G243400_v2.0.a1
pyrus_communis	pycom06g21500
rosa_chinensis	RchiOBHm_Chr7g0177101
rosa_laevigata	RLG00000005556
rosa_multiflora	Rmu_co8426227.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276090
rosa_rugosa	Rorug06G0403800
rosa_samantha	Rh7AG003200 Rh7DG003300
rosa_wichuraiana	Rw7G000270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	364
Acc16I	TGCGCA	1 cut(s)	37
Acc36I	ACCTGC	2 cut(s)	41, 364
AccIII	TCCGGA	1 cut(s)	712
AclWI	GGATC	3 cut(s)	29, 119, 150
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	1 cut(s)	586
AfiI	CCNNNNNNNGG	4 cut(s)	18, 101, 446, 757
AgsI	TTSAA	3 cut(s)	259, 495, 518
AjiI	CACGTC	1 cut(s)	883
AjnI	CCWGG	4 cut(s)	60, 587, 627, 797
Alw21I	GWGCWC	1 cut(s)	646
Alw26I	GTCTC	5 cut(s)	172, 248, 371, 391, 618
AlwI	GGATC	3 cut(s)	29, 119, 150
Aor13HI	TCCGGA	1 cut(s)	712
AoxI	GGCC	2 cut(s)	103, 298
ApeKI	GCWGC	1 cut(s)	632
ApoI	RAATTY	1 cut(s)	403
AspLEI	GCGC	1 cut(s)	38
Bbv12I	GWGCWC	1 cut(s)	646
BbvI	GCAGC	1 cut(s)	619
BccI	CCATC	1 cut(s)	625
BceAI	ACGGC	2 cut(s)	201, 774
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BciT130I	CCWGG	4 cut(s)	62, 589, 629, 799
BclI	TGATCA	1 cut(s)	499
BcoDI	GTCTC	5 cut(s)	172, 248, 371, 391, 618
BfaI	CTAG	1 cut(s)	896
BfuAI	ACCTGC	2 cut(s)	41, 364
BglII	AGATCT	1 cut(s)	872
BisI	GCNGC	1 cut(s)	633
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	634
Bme1390I	CCNGG	4 cut(s)	62, 589, 629, 799
BmgBI	CACGTC	1 cut(s)	883
BmiI	GGNNCC	2 cut(s)	438, 463
BmrFI	CCNGG	4 cut(s)	62, 589, 629, 799
BmsI	GCATC	5 cut(s)	86, 170, 184, 262, 706
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
Bpu1102I	GCTNAGC	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	4 cut(s)	60, 61, 95, 588
BsaWI	WCCGGW	1 cut(s)	712
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 101, 446, 757
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	3 cut(s)	451, 465, 922
Bse3DI	GCAATG	4 cut(s)	378, 768, 813, 840
Bse8I	GATNNNNATC	1 cut(s)	672
BseAI	TCCGGA	1 cut(s)	712
BseBI	CCWGG	4 cut(s)	62, 589, 629, 799
BseDI	CCNNGG	4 cut(s)	60, 61, 95, 588
BseGI	GGATG	1 cut(s)	721
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	4 cut(s)	18, 101, 446, 757
BseMI	GCAATG	4 cut(s)	378, 768, 813, 840
BseMII	CTCAG	3 cut(s)	162, 521, 591
BseNI	ACTGG	3 cut(s)	451, 465, 922
BseRI	GAGGAG	1 cut(s)	699
BseXI	GCAGC	1 cut(s)	619
BshFI	GGCC	2 cut(s)	105, 300
BsiHKAI	GWGCWC	1 cut(s)	646
BsiSI	CCGG	2 cut(s)	106, 713
BslFI	GGGAC	1 cut(s)	78
BslI	CCNNNNNNNGG	4 cut(s)	18, 101, 446, 757
BsmAI	GTCTC	5 cut(s)	172, 248, 371, 391, 618
BsmBI	CGTCTC	1 cut(s)	618
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	2 cut(s)	105, 300
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	646
Bsp13I	TCCGGA	1 cut(s)	712
Bsp143I	GATC	5 cut(s)	21, 124, 142, 499, 872
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	1 cut(s)	95
BspANI	GGCC	2 cut(s)	105, 300
BspCNI	CTCAG	3 cut(s)	163, 520, 592
BspEI	TCCGGA	1 cut(s)	712
BspLI	GGNNCC	2 cut(s)	438, 463
BspMI	ACCTGC	2 cut(s)	41, 364
BspPI	GGATC	3 cut(s)	29, 119, 150
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	4 cut(s)	378, 768, 813, 840
BsrFI	RCCGGY	1 cut(s)	105
BsrI	ACTGG	3 cut(s)	451, 465, 922
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	4 cut(s)	60, 61, 95, 588
BssMI	GATC	5 cut(s)	21, 124, 142, 499, 872
BssT1I	CCWWGG	1 cut(s)	95
Bst2UI	CCWGG	4 cut(s)	62, 589, 629, 799
Bst4CI	ACNGT	4 cut(s)	28, 414, 778, 823
Bst6I	CTCTTC	2 cut(s)	230, 236
BstAPI	GCANNNNNTGC	1 cut(s)	641
BstC8I	GCNNGC	1 cut(s)	831
BstDEI	CTNAG	6 cut(s)	17, 171, 486, 507, 563, 600
BstDSI	CCRYGG	1 cut(s)	95
BstENI	CCTNNNNNAGG	1 cut(s)	16
BstF5I	GGATG	1 cut(s)	721
BstHHI	GCGC	1 cut(s)	38
BstKTI	GATC	5 cut(s)	24, 127, 145, 502, 875
BstMAI	GTCTC	5 cut(s)	172, 248, 371, 391, 618
BstMBI	GATC	5 cut(s)	21, 124, 142, 499, 872
BstMWI	GCNNNNNNNGC	5 cut(s)	306, 356, 389, 470, 641
BstNI	CCWGG	4 cut(s)	62, 589, 629, 799
BstNSI	RCATGY	1 cut(s)	313
BstSCI	CCNGG	4 cut(s)	60, 587, 627, 797
BstV1I	GCAGC	1 cut(s)	619
BstX2I	RGATCY	1 cut(s)	872
BstXI	CCANNNNNNTGG	1 cut(s)	189
BstYI	RGATCY	1 cut(s)	872
BsuRI	GGCC	2 cut(s)	105, 300
BtgI	CCRYGG	1 cut(s)	95
BtrI	CACGTC	1 cut(s)	883
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	72
BtsIMutI	CAGTG	2 cut(s)	24, 72
BveI	ACCTGC	2 cut(s)	41, 364
Cac8I	GCNNGC	1 cut(s)	831
CfoI	GCGC	1 cut(s)	38
Cfr10I	RCCGGY	1 cut(s)	105
Csp6I	GTAC	1 cut(s)	585
CviAII	CATG	5 cut(s)	96, 310, 328, 647, 732
CviJI	RGCY	9 cut(s)	11, 105, 181, 300, 464, 511, 632, 694, 747
CviKI_1	RGCY	9 cut(s)	11, 105, 181, 300, 464, 511, 632, 694, 747
CviQI	GTAC	1 cut(s)	585
DdeI	CTNAG	6 cut(s)	17, 171, 486, 507, 563, 600
DpnI	GATC	5 cut(s)	23, 126, 144, 501, 874
DpnII	GATC	5 cut(s)	21, 124, 142, 499, 872
Eam1104I	CTCTTC	2 cut(s)	230, 236
EarI	CTCTTC	2 cut(s)	230, 236
Eco130I	CCWWGG	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	248
EcoNI	CCTNNNNNAGG	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	60, 587, 627, 797
EcoT14I	CCWWGG	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	95
Esp3I	CGTCTC	1 cut(s)	618
FaeI	CATG	5 cut(s)	99, 313, 331, 650, 735
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	5 cut(s)	95, 309, 327, 646, 731
FauNDI	CATATG	1 cut(s)	859
FbaI	TGATCA	1 cut(s)	499
Fnu4HI	GCNGC	1 cut(s)	633
FokI	GGATG	1 cut(s)	728
Fsp4HI	GCNGC	1 cut(s)	633
FspBI	CTAG	1 cut(s)	896
FspI	TGCGCA	1 cut(s)	37
GlaI	GCGC	1 cut(s)	37
GluI	GCNGC	1 cut(s)	633
HaeIII	GGCC	2 cut(s)	105, 300
HapII	CCGG	2 cut(s)	106, 713
HhaI	GCGC	1 cut(s)	38
Hin1II	CATG	5 cut(s)	99, 313, 331, 650, 735
Hin6I	GCGC	1 cut(s)	36
HinP1I	GCGC	1 cut(s)	36
HincII	GTYRAC	1 cut(s)	787
HindII	GTYRAC	1 cut(s)	787
HpaII	CCGG	2 cut(s)	106, 713
Hpy166II	GTNNAC	1 cut(s)	787
Hpy188I	TCNGA	5 cut(s)	172, 271, 601, 702, 931
Hpy188III	TCNNGA	3 cut(s)	677, 713, 878
Hpy8I	GTNNAC	1 cut(s)	787
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	1 cut(s)	421
HpyCH4III	ACNGT	4 cut(s)	28, 414, 778, 823
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	7 cut(s)	77, 161, 473, 551, 575, 635, 833
HpyF10VI	GCNNNNNNNGC	5 cut(s)	306, 356, 389, 470, 641
HpyF3I	CTNAG	6 cut(s)	17, 171, 486, 507, 563, 600
HpySE526I	ACGT	1 cut(s)	882
Hsp92II	CATG	5 cut(s)	99, 313, 331, 650, 735
HspAI	GCGC	1 cut(s)	36
Kpn2I	TCCGGA	1 cut(s)	712
Ksp22I	TGATCA	1 cut(s)	499
Kzo9I	GATC	5 cut(s)	21, 124, 142, 499, 872
LmnI	GCTCC	1 cut(s)	461
Lsp1109I	GCAGC	1 cut(s)	619
LweI	GCATC	5 cut(s)	86, 170, 184, 262, 706
MaeI	CTAG	1 cut(s)	896
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	3 cut(s)	28, 592, 913
MalI	GATC	5 cut(s)	23, 126, 144, 501, 874
MboI	GATC	5 cut(s)	21, 124, 142, 499, 872
MboII	GAAGA	5 cut(s)	217, 223, 474, 860, 918
MfeI	CAATTG	2 cut(s)	495, 621
MflI	RGATCY	1 cut(s)	872
MhlI	GDGCHC	1 cut(s)	646
MluCI	AATT	5 cut(s)	153, 339, 403, 495, 621
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	5 cut(s)	239, 595, 673, 720, 847
MroI	TCCGGA	1 cut(s)	712
MseI	TTAA	2 cut(s)	338, 939
MslI	CAYNNNNRTG	1 cut(s)	761
MspI	CCGG	2 cut(s)	106, 713
MspR9I	CCNGG	4 cut(s)	62, 589, 629, 799
MunI	CAATTG	2 cut(s)	495, 621
MvaI	CCWGG	4 cut(s)	62, 589, 629, 799
MwoI	GCNNNNNNNGC	5 cut(s)	306, 356, 389, 470, 641
NcoI	CCATGG	1 cut(s)	95
NdeI	CATATG	1 cut(s)	859
NdeII	GATC	5 cut(s)	21, 124, 142, 499, 872
NlaIII	CATG	5 cut(s)	99, 313, 331, 650, 735
NlaIV	GGNNCC	2 cut(s)	438, 463
NmuCI	GTSAC	2 cut(s)	28, 592
NsbI	TGCGCA	1 cut(s)	37
NspI	RCATGY	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	364
PasI	CCCWGGG	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	634
Psp6I	CCWGG	4 cut(s)	60, 587, 627, 797
PspGI	CCWGG	4 cut(s)	60, 587, 627, 797
PspN4I	GGNNCC	2 cut(s)	438, 463
PsuI	RGATCY	1 cut(s)	872
RsaI	GTAC	1 cut(s)	586
RsaNI	GTAC	1 cut(s)	585
RseI	CAYNNNNRTG	1 cut(s)	761
SaqAI	TTAA	2 cut(s)	338, 939
SatI	GCNGC	1 cut(s)	633
Sau3AI	GATC	5 cut(s)	21, 124, 142, 499, 872
ScrFI	CCNGG	4 cut(s)	62, 589, 629, 799
SduI	GDGCHC	1 cut(s)	646
SetI	ASST	7 cut(s)	35, 46, 358, 438, 590, 800, 885
SfaNI	GCATC	5 cut(s)	86, 170, 184, 262, 706
SmiMI	CAYNNNNRTG	1 cut(s)	761
Sse9I	AATT	5 cut(s)	153, 339, 403, 495, 621
SspMI	CTAG	1 cut(s)	896
StyD4I	CCNGG	4 cut(s)	60, 587, 627, 797
StyI	CCWWGG	1 cut(s)	95
TaaI	ACNGT	4 cut(s)	28, 414, 778, 823
TaiI	ACGT	1 cut(s)	885
TasI	AATT	5 cut(s)	153, 339, 403, 495, 621
Tru1I	TTAA	2 cut(s)	338, 939
Tru9I	TTAA	2 cut(s)	338, 939
TscAI	CASTG	2 cut(s)	31, 79
TseFI	GTSAC	2 cut(s)	28, 592
TseI	GCWGC	1 cut(s)	632
Tsp45I	GTSAC	2 cut(s)	28, 592
TspDTI	ATGAA	1 cut(s)	861
TspRI	CASTG	2 cut(s)	31, 79
XagI	CCTNNNNNAGG	1 cut(s)	16
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	1 cut(s)	313
XspI	CTAG	1 cut(s)	896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.