Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015848

Physical Location & Seq

Genomic Coordinates Forward (+)

54776139 .. 54781085

Gene Structure 4947 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0403800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2091 bp

ATGCCTTCTTCTTCTTCTTCTGCTCCATCTCAATCTCATCAAAAACGAACCTTTTTTACATCTTCATCTTCTACTCCTGCTTCCTCCTCCTCCTCCTCCTCCTCTGTCTCAGCTCTGAGACCGGGGATCAACAGAAGCGGCAGTGATGTTAACAGCCCACGGCGGCTCACGCGCCAGAGGAAGCTGCGCTACCTCACGAGCCCCGAGGATCTCGACTCTTACGGGGTCCCGGAGAAGTCTCGCTCATCGCCCACCTCGCCTGAATATTCGACCCGTAGATCACGCTCTCCGTGTGGCGAGTCAAATCCAAATTCACGCTTTCCCGGTGGCGAGTCGGCCCCATGTTCTCGGTCTTCGGTCGGTGACTCGGCCAGAAAGTCATGCTCCTCTTCTTTCGTTGCTGGGCCTCAAGGCCCACAACCCTTGCCGCTTCCGGAGAACAACCGGAGACCCGACTGCGTCTCTAAAGATAACAACTTCTTCAGCCCTGTGGTCGGCAGGAAGAGCGTCGATCAAGCTGCCACAAGCTCATCATCACCGGCGAAATCTTCCAAGAACCGAAGCCGAGATGTAAACAATTCCGGCGGGGGTGGGAGTGGGGGTTTTAATTTCCATTTGGGTTTGAATGTTCAATCTAGGACTGTTTTTAGCTCAAGTCATCATCATCCTGTTAGCCCACAAAGATCGAACACAGTGGATTTTTTGCCTTGTCAGTCACATGTTGCAGGCAACTTTTATAAACACAGGGGAATGGGAATGGGAATGGCAGTGTCACCGGAGGCTAACTTTGAACGTGAAACTTACAACTTGAGCAGGAGTGCTCCAACCAGTGTTCTCTCAAGTCCTGCAGTTAGCCCGCGCCGATCAACCACTGGGGATCCTTTTCCTTTTTTCATGACTCATCAAGATCAATATCAGGATGGTGCTACCTTTCTCTCGTTGTTGTCACCAAAGAAGCCTACACTCAGTCCCACTCATTCTCCACTCCATAGCCCTACGCCTCGAAGTCCACGCTTCAGCCCCAATGCTTCAAACTATGAGACTAGTCTTGCCACTGCTCACCCGTTGCCTCTGCCTCCTGGAGCCGCAGTGCCAGCACAGCCGCCGTCTATCACTATGCATCAAAATAATGTAGCACCAAATGTAACCGTATCATCAATGAAAGGTCAATGGCAGAAGGGGAAACTTATCGGACGGGGTACCTTTGGTAGTGTTTATCTTGCAACCAACCGAGAAACTGGGGCCTTGTGTGCAATGAAGGAAGTTGATCTCATTCCTGATGATCCTAAATCTGCAGAAAGTATAAAGCAATTGGAGCAGGAAATTAAAGTCCTCCGTACACTAAAGCATCCAAATATTGTGCAGTACTATGGTAGTGAAGTGATTGATGATCATTTCTACATATATTTAGAATATGTTCACCCTGGATCAATAAATAAATATGTCCAAGACCATTTTGGAGCTATGACTGAATCCGTAATCCGCAATTTTACCCGCCATATCCTCCGTGGGTTGGCTTTTTTGCATGACACGAAGACAATTCACAGGGATATTAAAGGTGCAAATTTGCTTGTTGATGCATCAGGCGTTGTCAAACTTGCCGATTTTGGGATGGCAAAACATCTTAGTGCGCATTCATACAATCTTTCTTTGAAGGGCAGCCCATACTGGATGGCTCCTGAGGTCATAAAGGCTGTGATACAGAATGATGGTGATCCTAATCTTGCTTTGGCTGTTGATATATGGAGCTTGGGTTGTACCATCATCGAGATGTTCAATGGAAAACCGCCTTGGAGTGAATTTGAAGGGCCACAAGCTATGTTCAAGGTTCTGCACAGAACCCCGGATATACCAGAAAAATTATCTGCAGAAGGAAAGGAATTCCTCAGTTTGTGCTTCAAAAGGAACCCCGCAGAGAGGCCATCAGCTAAGAAGCTACTTGATCATCCTTTTGTACGAAATTCAAATGATCAAAATGTCTCATCTTATACTCGGGCTTTTTCTCTGGTAATGGATAAATTAAATAGCCCGACCGACCATATTAAGCAAAAACTTGGTCGAATGCTGGTCTATCCACGCACTTCTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004576 GO:0004579 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006486 GO:0006487 GO:0006807 GO:0008150 GO:0008152 GO:0008250 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0031984 GO:0032991 GO:0034645 GO:0036211 GO:0042175 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0043687 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0070085 GO:0071704 GO:0071944 GO:0098796 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00510 ko00513 ko01100 ko04141 map00510 map00513 map01100 map04141

Pfam Domains

Protein Families

STT3

Protein Analysis

696

Amino Acids

76.04

Weight (kDa)

9.6

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	391 - 652	7.2e-68	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	394 - 647	4.8e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015848)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34130
fragaria_vesca	FvH4_5g18380 FvH4_5g18380
malus_domestica	MD06G1239500.v1.1 MD14G1245500.v1.1
prunus_persica	Prupe.5G243400_v2.0.a1
pyrus_communis	pycom06g21500
rosa_chinensis	RchiOBHm_Chr7g0177101
rosa_laevigata	RLG00000005556
rosa_multiflora	Rmu_co8426227.1_g000001
rosa_roxburghii	Rroxscaffold_3G00276090
rosa_rugosa	Rorug06G0403800
rosa_samantha	Rh7AG003200 Rh7DG003300
rosa_wichuraiana	Rw7G000270

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
Acc16I	TGCGCA	1 cut(s)	1632
Acc65I	GGTACC	1 cut(s)	1199
AccB1I	GGYRCC	1 cut(s)	1199
AccII	CGCG	2 cut(s)	172, 859
AccIII	TCCGGA	1 cut(s)	433
AclWI	GGATC	7 cut(s)	134, 216, 872, 885, 1277, 1435, 1709
AcoI	YGGCCR	1 cut(s)	369
AcsI	RAATTY	5 cut(s)	310, 1564, 1799, 1880, 1960
AcuI	CTGAAG	2 cut(s)	466, 1000
AfaI	GTAC	5 cut(s)	1201, 1339, 1367, 1759, 1956
AfiI	CCNNNNNNNGG	4 cut(s)	494, 1513, 1608, 1917
AflIII	ACRYGT	1 cut(s)	718
AhlI	ACTAGT	1 cut(s)	1043
AjnI	CCWGG	2 cut(s)	1078, 1423
AjuI	GAANNNNNNNTTGG	2 cut(s)	1774, 1806
Alw21I	GWGCWC	1 cut(s)	823
Alw26I	GTCTC	7 cut(s)	112, 112, 243, 442, 466, 1034, 1984
AlwI	GGATC	7 cut(s)	134, 216, 872, 885, 1277, 1435, 1709
Ama87I	CYCGRG	2 cut(s)	203, 1992
Aor13HI	TCCGGA	1 cut(s)	433
AoxI	GGCC	7 cut(s)	336, 369, 404, 412, 1242, 1808, 1919
ApeKI	GCWGC	3 cut(s)	184, 518, 1659
ApoI	RAATTY	5 cut(s)	310, 1564, 1799, 1880, 1960
ArsI	GACNNNNNNTTYG	2 cut(s)	2041, 2073
Asp700I	GAANNNNTTC	1 cut(s)	1416
Asp718I	GGTACC	1 cut(s)	1199
AspLEI	GCGC	4 cut(s)	174, 189, 861, 1633
AspS9I	GGNCC	6 cut(s)	226, 337, 404, 413, 1242, 1808
AsuC2I	CCSGG	4 cut(s)	123, 230, 324, 1844
AsuHPI	GGTGA	7 cut(s)	374, 528, 765, 939, 1052, 1412, 1724
AvaI	CYCGRG	2 cut(s)	203, 1992
AvaII	GGWCC	1 cut(s)	226
AxyI	CCTNAGG	1 cut(s)	1680
BamHI	GGATCC	1 cut(s)	877
BanI	GGYRCC	1 cut(s)	1199
BanII	GRGCYC	1 cut(s)	203
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BauI	CACGAG	1 cut(s)	196
BbsI	GAAGAC	2 cut(s)	345, 1541
Bbv12I	GWGCWC	1 cut(s)	823
BbvI	GCAGC	3 cut(s)	171, 505, 1671
BccI	CCATC	7 cut(s)	34, 914, 1606, 1666, 1703, 1769, 1930
BceAI	ACGGC	2 cut(s)	176, 1090
BcgI	CGANNNNNNTGC	2 cut(s)	500, 534
BciT130I	CCWGG	2 cut(s)	1080, 1425
BclI	TGATCA	3 cut(s)	1390, 1942, 1969
BcnI	CCSGG	4 cut(s)	123, 230, 324, 1844
BcoDI	GTCTC	7 cut(s)	112, 112, 243, 442, 466, 1034, 1984
BcuI	ACTAGT	1 cut(s)	1043
BfaI	CTAG	2 cut(s)	636, 1044
BfmI	CTRYAG	3 cut(s)	846, 1293, 1866
BisI	GCNGC	8 cut(s)	139, 164, 185, 428, 519, 1086, 1103, 1660
BlsI	GCNGC	8 cut(s)	140, 165, 186, 429, 520, 1087, 1104, 1661
BmcAI	AGTACT	1 cut(s)	1367
Bme1390I	CCNGG	6 cut(s)	123, 230, 324, 1080, 1425, 1844
Bme18I	GGWCC	1 cut(s)	226
BmeT110I	CYCGRG	2 cut(s)	203, 1992
BmgT120I	GGNCC	6 cut(s)	226, 337, 404, 413, 1242, 1808
BmiI	GGNNCC	9 cut(s)	227, 228, 339, 879, 1084, 1201, 1243, 1677, 1907
BmrFI	CCNGG	6 cut(s)	123, 230, 324, 1080, 1425, 1844
BmrI	ACTGGG	2 cut(s)	882, 1248
BmsI	GCATC	4 cut(s)	1129, 1357, 1567, 1589
BmuI	ACTGGG	2 cut(s)	882, 1248
BpiI	GAAGAC	2 cut(s)	345, 1541
BpmI	CTGGAG	1 cut(s)	1101
BpuEI	CTTGAG	4 cut(s)	393, 637, 823, 829
BpuMI	CCSGG	4 cut(s)	123, 230, 324, 1844
BsaBI	GATNNNNATC	3 cut(s)	912, 1713, 1719
BsaI	GGTCTC	2 cut(s)	112, 442
BsaJI	CCNNGG	7 cut(s)	122, 158, 204, 1423, 1507, 1790, 1842
BsaWI	WCCGGW	3 cut(s)	433, 444, 775
BsaXI	ACNNNNNCTCC	8 cut(s)	586, 616, 964, 994, 1074, 1104, 1738, 1768
Bsc4I	CCNNNNNNNGG	4 cut(s)	494, 1513, 1608, 1917
Bse118I	RCCGGY	1 cut(s)	538
Bse1I	ACTGG	4 cut(s)	828, 877, 1243, 1673
Bse21I	CCTNAGG	1 cut(s)	1680
Bse3DI	GCAATG	1 cut(s)	1260
Bse8I	GATNNNNATC	3 cut(s)	912, 1713, 1719
BseAI	TCCGGA	1 cut(s)	433
BseBI	CCWGG	2 cut(s)	1080, 1425
BseDI	CCNNGG	7 cut(s)	122, 158, 204, 1423, 1507, 1790, 1842
BseGI	GGATG	6 cut(s)	664, 925, 1348, 1617, 1677, 1945
BseJI	GATNNNNATC	3 cut(s)	912, 1713, 1719
BseLI	CCNNNNNNNGG	4 cut(s)	494, 1513, 1608, 1917
BseMI	GCAATG	1 cut(s)	1260
BseMII	CTCAG	5 cut(s)	107, 123, 979, 1671, 1900
BseNI	ACTGG	4 cut(s)	828, 877, 1243, 1673
BseRI	GAGGAG	7 cut(s)	76, 79, 82, 85, 88, 91, 376
BseXI	GCAGC	3 cut(s)	171, 505, 1671
BseYI	CCCAGC	1 cut(s)	401
BsgI	GTGCAG	2 cut(s)	1382, 1817
Bsh1236I	CGCG	2 cut(s)	172, 859
Bsh1285I	CGRYCG	2 cut(s)	360, 2034
BshFI	GGCC	7 cut(s)	338, 371, 406, 414, 1244, 1810, 1921
BshNI	GGYRCC	1 cut(s)	1199
BsiEI	CGRYCG	2 cut(s)	360, 2034
BsiHKAI	GWGCWC	1 cut(s)	823
BsiHKCI	CYCGRG	2 cut(s)	203, 1992
BsiSI	CCGG	9 cut(s)	122, 230, 324, 434, 445, 539, 582, 776, 1844
BslFI	GGGAC	2 cut(s)	212, 954
BslI	CCNNNNNNNGG	4 cut(s)	494, 1513, 1608, 1917
BsmAI	GTCTC	7 cut(s)	112, 112, 243, 442, 466, 1034, 1984
BsmBI	CGTCTC	1 cut(s)	466
BsmFI	GGGAC	2 cut(s)	212, 954
BsmI	GAATGC	2 cut(s)	1633, 2067
BsnI	GGCC	7 cut(s)	338, 371, 406, 414, 1244, 1810, 1921
Bso31I	GGTCTC	2 cut(s)	112, 442
BsoBI	CYCGRG	2 cut(s)	203, 1992
Bsp1286I	GDGCHC	2 cut(s)	203, 823
Bsp13I	TCCGGA	1 cut(s)	433
BspANI	GGCC	7 cut(s)	338, 371, 406, 414, 1244, 1810, 1921
BspCNI	CTCAG	5 cut(s)	108, 122, 978, 1672, 1899
BspEI	TCCGGA	1 cut(s)	433
BspFNI	CGCG	2 cut(s)	172, 859
BspHI	TCATGA	1 cut(s)	894
BspLI	GGNNCC	9 cut(s)	227, 228, 339, 879, 1084, 1201, 1243, 1677, 1907
BspMAI	CTGCAG	3 cut(s)	850, 1297, 1870
BspPI	GGATC	7 cut(s)	134, 216, 872, 885, 1277, 1435, 1709
BspQI	GCTCTTC	1 cut(s)	497
BspT107I	GGYRCC	1 cut(s)	1199
BspTNI	GGTCTC	2 cut(s)	112, 442
BsrDI	GCAATG	1 cut(s)	1260
BsrFI	RCCGGY	1 cut(s)	538
BsrI	ACTGG	4 cut(s)	828, 877, 1243, 1673
BssAI	RCCGGY	1 cut(s)	538
BssECI	CCNNGG	7 cut(s)	122, 158, 204, 1423, 1507, 1790, 1842
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	1790
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	2 cut(s)	1080, 1425
Bst4CI	ACNGT	3 cut(s)	643, 694, 1150
Bst6I	CTCTTC	2 cut(s)	394, 497
BstC8I	GCNNGC	3 cut(s)	727, 857, 1095
BstDEI	CTNAG	7 cut(s)	109, 116, 965, 1625, 1680, 1886, 1929
BstDSI	CCRYGG	2 cut(s)	158, 1507
BstF5I	GGATG	6 cut(s)	664, 925, 1348, 1617, 1677, 1945
BstFNI	CGCG	2 cut(s)	172, 859
BstHHI	GCGC	4 cut(s)	174, 189, 861, 1633
BstMAI	GTCTC	7 cut(s)	112, 112, 243, 442, 466, 1034, 1984
BstMCI	CGRYCG	2 cut(s)	360, 2034
BstMWI	GCNNNNNNNGC	7 cut(s)	169, 256, 504, 1094, 1099, 1250, 1315
BstNI	CCWGG	2 cut(s)	1080, 1425
BstNSI	RCATGY	1 cut(s)	722
BstSCI	CCNGG	6 cut(s)	121, 228, 322, 1078, 1423, 1842
BstSFI	CTRYAG	3 cut(s)	846, 1293, 1866
BstUI	CGCG	2 cut(s)	172, 859
BstV1I	GCAGC	3 cut(s)	171, 505, 1671
BstV2I	GAAGAC	2 cut(s)	345, 1541
BstX2I	RGATCY	2 cut(s)	208, 877
BstYI	RGATCY	2 cut(s)	208, 877
Bsu36I	CCTNAGG	1 cut(s)	1680
BsuRI	GGCC	7 cut(s)	338, 371, 406, 414, 1244, 1810, 1921
BtgI	CCRYGG	2 cut(s)	158, 1507
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	6 cut(s)	664, 925, 1348, 1617, 1677, 1945
BtsI	GCAGTG	4 cut(s)	148, 774, 1053, 1095
BtsIMutI	CAGTG	7 cut(s)	148, 699, 774, 835, 870, 1053, 1095
Cac8I	GCNNGC	3 cut(s)	727, 857, 1095
CciI	TCATGA	1 cut(s)	894
CfoI	GCGC	4 cut(s)	174, 189, 861, 1633
Cfr10I	RCCGGY	1 cut(s)	538
Cfr13I	GGNCC	6 cut(s)	226, 337, 404, 413, 1242, 1808
CseI	GACGC	2 cut(s)	448, 496
Csp6I	GTAC	5 cut(s)	1200, 1338, 1366, 1758, 1955
CspCI	CAANNNNNGTGG	2 cut(s)	405, 440
CviAII	CATG	5 cut(s)	342, 381, 719, 895, 1526
CviQI	GTAC	5 cut(s)	1200, 1338, 1366, 1758, 1955
DdeI	CTNAG	7 cut(s)	109, 116, 965, 1625, 1680, 1886, 1929
EaeI	YGGCCR	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	394, 497
EarI	CTCTTC	2 cut(s)	394, 497
Eco130I	CCWWGG	1 cut(s)	1790
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	112, 442
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	2 cut(s)	466, 1000
Eco81I	CCTNAGG	1 cut(s)	1680
Eco88I	CYCGRG	2 cut(s)	203, 1992
EcoO109I	RGGNCCY	2 cut(s)	226, 1242
EcoRI	GAATTC	1 cut(s)	1880
EcoRII	CCWGG	2 cut(s)	1078, 1423
EcoT14I	CCWWGG	1 cut(s)	1790
EcoT22I	ATGCAT	2 cut(s)	1122, 1582
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	1 cut(s)	1790
Esp3I	CGTCTC	1 cut(s)	466
FaeI	CATG	5 cut(s)	345, 384, 722, 898, 1529
FaqI	GGGAC	2 cut(s)	212, 954
FatI	CATG	5 cut(s)	341, 380, 718, 894, 1525
FauI	CCCGC	4 cut(s)	578, 864, 1502, 1918
FbaI	TGATCA	3 cut(s)	1390, 1942, 1969
Fnu4HI	GCNGC	8 cut(s)	139, 164, 185, 428, 519, 1086, 1103, 1660
FokI	GGATG	6 cut(s)	651, 932, 1335, 1624, 1684, 1932
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	8 cut(s)	139, 164, 185, 428, 519, 1086, 1103, 1660
FspAI	RTGCGCAY	1 cut(s)	1632
FspBI	CTAG	2 cut(s)	636, 1044
FspI	TGCGCA	1 cut(s)	1632
GlaI	GCGC	4 cut(s)	173, 188, 860, 1632
GluI	GCNGC	8 cut(s)	139, 164, 185, 428, 519, 1086, 1103, 1660
GsaI	CCCAGC	1 cut(s)	405
GsuI	CTGGAG	1 cut(s)	1101
HaeIII	GGCC	7 cut(s)	338, 371, 406, 414, 1244, 1810, 1921
HapII	CCGG	9 cut(s)	122, 230, 324, 434, 445, 539, 582, 776, 1844
HgaI	GACGC	2 cut(s)	448, 496
HhaI	GCGC	4 cut(s)	174, 189, 861, 1633
Hin1II	CATG	5 cut(s)	345, 384, 722, 898, 1529
Hin6I	GCGC	4 cut(s)	172, 187, 859, 1631
HinP1I	GCGC	4 cut(s)	172, 187, 859, 1631
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	6 cut(s)	215, 299, 332, 365, 898, 1472
HpaI	GTTAAC	1 cut(s)	151
HpaII	CCGG	9 cut(s)	122, 230, 324, 434, 445, 539, 582, 776, 1844
HphI	GGTGA	7 cut(s)	374, 528, 765, 939, 1052, 1412, 1724
Hpy166II	GTNNAC	5 cut(s)	151, 574, 1010, 1340, 1420
Hpy188I	TCNGA	2 cut(s)	117, 1193
Hpy188III	TCNNGA	9 cut(s)	196, 212, 434, 895, 905, 917, 1277, 1679, 1768
Hpy8I	GTNNAC	5 cut(s)	151, 574, 1010, 1340, 1420
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	6 cut(s)	15, 1171, 1252, 1648, 1799, 1865
HpyCH4III	ACNGT	3 cut(s)	643, 694, 1150
HpyCH4IV	ACGT	1 cut(s)	793
HpyF10VI	GCNNNNNNNGC	7 cut(s)	169, 256, 504, 1094, 1099, 1250, 1315
HpyF3I	CTNAG	7 cut(s)	109, 116, 965, 1625, 1680, 1886, 1929
HpySE526I	ACGT	1 cut(s)	793
Hsp92II	CATG	5 cut(s)	345, 384, 722, 898, 1529
HspAI	GCGC	4 cut(s)	172, 187, 859, 1631
KflI	GGGWCCC	1 cut(s)	226
Kpn2I	TCCGGA	1 cut(s)	433
KpnI	GGTACC	1 cut(s)	1203
Ksp22I	TGATCA	3 cut(s)	1390, 1942, 1969
KspAI	GTTAAC	1 cut(s)	151
LguI	GCTCTTC	1 cut(s)	497
LmnI	GCTCC	8 cut(s)	28, 389, 826, 1082, 1315, 1460, 1681, 1746
Lsp1109I	GCAGC	3 cut(s)	171, 505, 1671
LweI	GCATC	4 cut(s)	1129, 1357, 1567, 1589
MaeI	CTAG	2 cut(s)	636, 1044
MaeII	ACGT	1 cut(s)	793
MaeIII	GTNAC	5 cut(s)	362, 714, 771, 945, 1144
MfeI	CAATTG	1 cut(s)	1310
MflI	RGATCY	2 cut(s)	208, 877
MhlI	GDGCHC	2 cut(s)	203, 823
MlyI	GAGTC	5 cut(s)	209, 308, 341, 359, 892
MmeI	TCCRAC	1 cut(s)	848
Mph1103I	ATGCAT	2 cut(s)	1122, 1582
MroI	TCCGGA	1 cut(s)	433
MroXI	GAANNNNTTC	1 cut(s)	1416
MseI	TTAA	6 cut(s)	150, 606, 1326, 1554, 2021, 2043
MslI	CAYNNNNRTG	2 cut(s)	1626, 1769
MspI	CCGG	9 cut(s)	122, 230, 324, 434, 445, 539, 582, 776, 1844
MspR9I	CCNGG	6 cut(s)	123, 230, 324, 1080, 1425, 1844
MunI	CAATTG	1 cut(s)	1310
Mva1269I	GAATGC	2 cut(s)	1633, 2067
MvaI	CCWGG	2 cut(s)	1080, 1425
MvnI	CGCG	2 cut(s)	172, 859
MwoI	GCNNNNNNNGC	7 cut(s)	169, 256, 504, 1094, 1099, 1250, 1315
NciI	CCSGG	4 cut(s)	123, 230, 324, 1844
NlaIII	CATG	5 cut(s)	345, 384, 722, 898, 1529
NlaIV	GGNNCC	9 cut(s)	227, 228, 339, 879, 1084, 1201, 1243, 1677, 1907
NmeAIII	GCCGAG	2 cut(s)	347, 590
NmuCI	GTSAC	4 cut(s)	362, 714, 771, 945
NsbI	TGCGCA	1 cut(s)	1632
NsiI	ATGCAT	2 cut(s)	1122, 1582
NspI	RCATGY	1 cut(s)	722
PagI	TCATGA	1 cut(s)	894
PciI	ACATGT	1 cut(s)	718
PciSI	GCTCTTC	1 cut(s)	497
PctI	GAATGC	2 cut(s)	1633, 2067
PdmI	GAANNNNTTC	1 cut(s)	1416
PfeI	GAWTC	1 cut(s)	1472
PflFI	GACNNNGTC	1 cut(s)	458
PfoI	TCCNGGA	2 cut(s)	228, 1078
PkrI	GCNGC	8 cut(s)	140, 165, 186, 429, 520, 1087, 1104, 1661
PleI	GAGTC	5 cut(s)	209, 307, 340, 359, 892
PpsI	GAGTC	5 cut(s)	209, 307, 340, 359, 892
PpuMI	RGGWCCY	1 cut(s)	226
PscI	ACATGT	1 cut(s)	718
PsiI	TTATAA	1 cut(s)	738
Psp5II	RGGWCCY	1 cut(s)	226
Psp6I	CCWGG	2 cut(s)	1078, 1423
PspFI	CCCAGC	1 cut(s)	401
PspGI	CCWGG	2 cut(s)	1078, 1423
PspN4I	GGNNCC	9 cut(s)	227, 228, 339, 879, 1084, 1201, 1243, 1677, 1907
PspPI	GGNCC	6 cut(s)	226, 337, 404, 413, 1242, 1808
PspPPI	RGGWCCY	1 cut(s)	226
PsrI	GAACNNNNNNTAC	2 cut(s)	40, 72
PstI	CTGCAG	3 cut(s)	850, 1297, 1870
PsuI	RGATCY	2 cut(s)	208, 877
PsyI	GACNNNGTC	1 cut(s)	458
RsaI	GTAC	5 cut(s)	1201, 1339, 1367, 1759, 1956
RsaNI	GTAC	5 cut(s)	1200, 1338, 1366, 1758, 1955
RseI	CAYNNNNRTG	2 cut(s)	1626, 1769
SapI	GCTCTTC	1 cut(s)	497
SaqAI	TTAA	6 cut(s)	150, 606, 1326, 1554, 2021, 2043
SatI	GCNGC	8 cut(s)	139, 164, 185, 428, 519, 1086, 1103, 1660
Sau96I	GGNCC	6 cut(s)	226, 337, 404, 413, 1242, 1808
ScaI	AGTACT	1 cut(s)	1367
SchI	GAGTC	5 cut(s)	209, 308, 341, 359, 892
ScrFI	CCNGG	6 cut(s)	123, 230, 324, 1080, 1425, 1844
SduI	GDGCHC	2 cut(s)	203, 823
SfaNI	GCATC	4 cut(s)	1129, 1357, 1567, 1589
SfcI	CTRYAG	3 cut(s)	846, 1293, 1866
SgrAI	CRCCGGYG	1 cut(s)	538
SinI	GGWCC	1 cut(s)	226
SmiMI	CAYNNNNRTG	2 cut(s)	1626, 1769
SmlI	CTYRAG	4 cut(s)	408, 652, 808, 838
SmoI	CTYRAG	4 cut(s)	408, 652, 808, 838
SpeI	ACTAGT	1 cut(s)	1043
SspI	AATATT	2 cut(s)	266, 1357
SspMI	CTAG	2 cut(s)	636, 1044
StyD4I	CCNGG	6 cut(s)	121, 228, 322, 1078, 1423, 1842
StyI	CCWWGG	1 cut(s)	1790
TaaI	ACNGT	3 cut(s)	643, 694, 1150
TaiI	ACGT	1 cut(s)	796
TaqI	TCGA	7 cut(s)	213, 269, 510, 686, 1003, 1767, 2059
TaqII	GACCGA	3 cut(s)	339, 346, 2048
TatI	WGTACW	1 cut(s)	1365
TauI	GCSGC	5 cut(s)	141, 166, 430, 1088, 1105
TfiI	GAWTC	1 cut(s)	1472
Tru1I	TTAA	6 cut(s)	150, 606, 1326, 1554, 2021, 2043
Tru9I	TTAA	6 cut(s)	150, 606, 1326, 1554, 2021, 2043
TscAI	CASTG	7 cut(s)	148, 699, 774, 835, 877, 1060, 1095
TseFI	GTSAC	4 cut(s)	362, 714, 771, 945
TseI	GCWGC	3 cut(s)	184, 518, 1659
Tsp45I	GTSAC	4 cut(s)	362, 714, 771, 945
TspDTI	ATGAA	5 cut(s)	54, 883, 1175, 1271, 1626
TspGWI	ACGGA	4 cut(s)	279, 1325, 1465, 1496
TspRI	CASTG	7 cut(s)	148, 699, 774, 835, 877, 1060, 1095
Tth111I	GACNNNGTC	1 cut(s)	458
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	5 cut(s)	310, 1564, 1799, 1880, 1960
XceI	RCATGY	1 cut(s)	722
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1454, 1505
XmnI	GAANNNNTTC	1 cut(s)	1416
XspI	CTAG	2 cut(s)	636, 1044
ZrmI	AGTACT	1 cut(s)	1367
Zsp2I	ATGCAT	2 cut(s)	1122, 1582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.