Rmu_co8449195.1_g000001

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8449195.1
OG0025700
Physical Location & Seq
Forward (+)
1 .. 1371
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8449195.1_g000001.1.cds

Sequence Viewer

Length: 775 bp
acctgggtcataccaatattggttctacataccaagacgggagttagcaaaaaggttgaataaaggcttcatccgagctgaaataataccagaggtgaatgtgaaagaatgtggggcgagactaatatactctgacgatgtgcccaactttattcagagtctactccagacgtacagtcccgcggaccatgatgttattgagctaattccttctcatgaaccaactccattcttcattgaaattgaacctcccggatatgattcaagttcaaccaagattgtcggtgaactgagaagaaacatagagttagttcttcaccaactctttgagggaggcaatgcaggttactatgattatggtttcactgtatctcctaaactcaaagcaattttgccgtggtttagtgatcaaagccttgggagcgaagtagtactactacctcattctcctccggatttgtacaaggacaagacatggctaggattatctgtctatgctgccttcactgtgtctccaggttcaacattttcctgtgcttgttacttgattaccgtcactggagaatattcggtacgtttgttagcaacatgcattgttgaagatgaatcttctggatcacagagaatctgtatcatccatataccgcgtgcacgtttcccagaacaatggattcagtgtggtcaagtttttgctagctttgatgtccttattccaggtggaaaaaaggatgctgatatgtgtggggtccgtccggtataccgactgctgatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

257

Amino Acids

28.91

Weight (kDa)

5.42

Isoelectric Point (pI)

59.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025700)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8449195.1_g000001
rosa_samantha Rh4BG299700 Rh4DG296700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AccI GTMKAC 2 cut(s) 161, 757
AccII CGCG 2 cut(s) 183, 647
AccIII TCCGGA 1 cut(s) 452
AciI CCGC 3 cut(s) 181, 183, 645
AclWI GGATC 1 cut(s) 623
AfaI GTAC 4 cut(s) 174, 433, 462, 574
AgsI TTSAA 7 cut(s) 59, 240, 246, 265, 271, 523, 600
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 3 cut(s) 2, 515, 713
AluBI AGCT 3 cut(s) 78, 203, 697
AluI AGCT 3 cut(s) 78, 203, 697
Alw21I GWGCWC 1 cut(s) 653
Alw26I GTCTC 2 cut(s) 113, 517
Alw44I GTGCAC 1 cut(s) 649
AlwI GGATC 1 cut(s) 623
Aor13HI TCCGGA 1 cut(s) 452
ApaLI GTGCAC 1 cut(s) 649
ApeKI GCWGC 1 cut(s) 498
ArsI GACNNNNNNTTYG 1 cut(s) 754
AspS9I GGNCC 2 cut(s) 185, 746
AsuC2I CCSGG 1 cut(s) 253
AsuHPI GGTGA 3 cut(s) 107, 297, 309
AsuNHI GCTAGC 1 cut(s) 693
AvaII GGWCC 2 cut(s) 185, 746
BaeGI GKGCMC 2 cut(s) 145, 653
BaeI ACNNNNGTAYC 2 cut(s) 564, 597
BarI GAAGNNNNNNTAC 2 cut(s) 418, 450
Bbv12I GWGCWC 1 cut(s) 653
BbvI GCAGC 1 cut(s) 485
BceAI ACGGC 1 cut(s) 380
BciT130I CCWGG 3 cut(s) 4, 517, 715
BclI TGATCA 1 cut(s) 407
BcnI CCSGG 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 113, 517
BfaI CTAG 2 cut(s) 480, 694
BfuAI ACCTGC 1 cut(s) 333
BisI GCNGC 1 cut(s) 499
BlsI GCNGC 1 cut(s) 500
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 4 cut(s) 4, 253, 517, 715
Bme18I GGWCC 2 cut(s) 185, 746
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 185, 746
BmiI GGNNCC 1 cut(s) 747
BmrFI CCNGG 4 cut(s) 4, 253, 517, 715
BmsI GCATC 1 cut(s) 719
BmtI GCTAGC 1 cut(s) 697
BpmI CTGGAG 3 cut(s) 150, 499, 580
BpuMI CCSGG 1 cut(s) 253
BsaJI CCNNGG 4 cut(s) 3, 181, 396, 416
BsaWI WCCGGW 2 cut(s) 452, 752
BsaXI ACNNNNNCTCC 4 cut(s) 356, 386, 497, 527
Bse1I ACTGG 1 cut(s) 563
Bse3DI GCAATG 1 cut(s) 344
BseAI TCCGGA 1 cut(s) 452
BseBI CCWGG 3 cut(s) 4, 517, 715
BseDI CCNNGG 4 cut(s) 3, 181, 396, 416
BseGI GGATG 3 cut(s) 70, 634, 734
BseMI GCAATG 1 cut(s) 344
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 563
BseRI GAGGAG 1 cut(s) 439
BseSI GKGCMC 2 cut(s) 145, 653
BseXI GCAGC 1 cut(s) 485
Bsh1236I CGCG 2 cut(s) 183, 647
BsiHKAI GWGCWC 1 cut(s) 653
BsiSI CCGG 3 cut(s) 253, 453, 753
BslFI GGGAC 1 cut(s) 163
BsmAI GTCTC 2 cut(s) 113, 517
BsmFI GGGAC 1 cut(s) 163
Bsp1286I GDGCHC 2 cut(s) 145, 653
Bsp13I TCCGGA 1 cut(s) 452
Bsp1407I TGTACA 1 cut(s) 460
Bsp143I GATC 2 cut(s) 407, 615
BspACI CCGC 3 cut(s) 181, 183, 645
BspCNI CTCAG 1 cut(s) 283
BspEI TCCGGA 1 cut(s) 452
BspFNI CGCG 2 cut(s) 183, 647
BspHI TCATGA 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 747
BspMI ACCTGC 1 cut(s) 333
BspOI GCTAGC 1 cut(s) 697
BspPI GGATC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 344
BsrGI TGTACA 1 cut(s) 460
BsrI ACTGG 1 cut(s) 563
BssECI CCNNGG 4 cut(s) 3, 181, 396, 416
BssMI GATC 2 cut(s) 407, 615
BssNAI GTATAC 1 cut(s) 758
BssT1I CCWWGG 1 cut(s) 416
Bst1107I GTATAC 1 cut(s) 758
Bst2UI CCWGG 3 cut(s) 4, 517, 715
Bst4CI ACNGT 4 cut(s) 177, 368, 509, 554
BstAUI TGTACA 1 cut(s) 460
BstC8I GCNNGC 2 cut(s) 649, 695
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 2 cut(s) 181, 396
BstF5I GGATG 3 cut(s) 70, 634, 734
BstFNI CGCG 2 cut(s) 183, 647
BstKTI GATC 2 cut(s) 410, 618
BstMAI GTCTC 2 cut(s) 113, 517
BstMBI GATC 2 cut(s) 407, 615
BstMWI GCNNNNNNNGC 1 cut(s) 421
BstNI CCWGG 3 cut(s) 4, 517, 715
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 4 cut(s) 2, 251, 515, 713
BstSLI GKGCMC 2 cut(s) 145, 653
BstUI CGCG 2 cut(s) 183, 647
BstV1I GCAGC 1 cut(s) 485
BstXI CCANNNNNNTGG 1 cut(s) 667
BstZ17I GTATAC 1 cut(s) 758
BtgI CCRYGG 2 cut(s) 181, 396
BtsCI GGATG 3 cut(s) 70, 634, 734
BtsIMutI CAGTG 4 cut(s) 364, 505, 556, 681
BveI ACCTGC 1 cut(s) 333
Cac8I GCNNGC 2 cut(s) 649, 695
CciI TCATGA 1 cut(s) 215
Cfr13I GGNCC 2 cut(s) 185, 746
Cfr42I CCGCGG 1 cut(s) 184
Csp6I GTAC 4 cut(s) 173, 432, 461, 573
CviAII CATG 4 cut(s) 189, 216, 475, 589
CviJI RGCY 6 cut(s) 67, 78, 203, 415, 479, 697
CviKI_1 RGCY 6 cut(s) 67, 78, 203, 415, 479, 697
CviQI GTAC 4 cut(s) 173, 432, 461, 573
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 409, 617
DpnII GATC 2 cut(s) 407, 615
DriI GACNNNNNGTC 1 cut(s) 175
Eam1105I GACNNNNNGTC 1 cut(s) 175
Eco130I CCWWGG 1 cut(s) 416
Eco47I GGWCC 2 cut(s) 185, 746
EcoRII CCWGG 3 cut(s) 2, 515, 713
EcoT14I CCWWGG 1 cut(s) 416
EcoT22I ATGCAT 1 cut(s) 594
ErhI CCWWGG 1 cut(s) 416
FaeI CATG 4 cut(s) 192, 219, 478, 592
FaqI GGGAC 1 cut(s) 163
FatI CATG 4 cut(s) 188, 215, 474, 588
FauI CCCGC 1 cut(s) 188
FbaI TGATCA 1 cut(s) 407
FblI GTMKAC 2 cut(s) 161, 757
Fnu4HI GCNGC 1 cut(s) 499
FokI GGATG 3 cut(s) 57, 621, 741
Fsp4HI GCNGC 1 cut(s) 499
FspBI CTAG 2 cut(s) 480, 694
GluI GCNGC 1 cut(s) 499
GsuI CTGGAG 3 cut(s) 150, 499, 580
HapII CCGG 3 cut(s) 253, 453, 753
Hin1II CATG 4 cut(s) 192, 219, 478, 592
HinfI GANTC 5 cut(s) 158, 261, 606, 625, 671
HpaII CCGG 3 cut(s) 253, 453, 753
HphI GGTGA 3 cut(s) 107, 297, 309
Hpy166II GTNNAC 4 cut(s) 162, 288, 651, 758
Hpy188I TCNGA 3 cut(s) 75, 134, 157
Hpy188III TCNNGA 4 cut(s) 167, 216, 453, 613
Hpy8I GTNNAC 4 cut(s) 162, 288, 651, 758
HpyAV CCTTC 2 cut(s) 220, 512
HpyCH4III ACNGT 4 cut(s) 177, 368, 509, 554
HpyCH4IV ACGT 3 cut(s) 171, 575, 653
HpyCH4V TGCA 3 cut(s) 342, 592, 651
HpyF10VI GCNNNNNNNGC 1 cut(s) 421
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 3 cut(s) 171, 575, 653
Hsp92II CATG 4 cut(s) 192, 219, 478, 592
Kpn2I TCCGGA 1 cut(s) 452
Ksp22I TGATCA 1 cut(s) 407
KspI CCGCGG 1 cut(s) 184
Kzo9I GATC 2 cut(s) 407, 615
LmnI GCTCC 1 cut(s) 421
Lsp1109I GCAGC 1 cut(s) 485
LweI GCATC 1 cut(s) 719
MaeI CTAG 2 cut(s) 480, 694
MaeII ACGT 3 cut(s) 171, 575, 653
MaeIII GTNAC 3 cut(s) 345, 540, 554
MalI GATC 2 cut(s) 409, 617
MboI GATC 2 cut(s) 407, 615
MboII GAAGA 5 cut(s) 224, 306, 307, 601, 612
MhlI GDGCHC 2 cut(s) 145, 653
MluCI AATT 3 cut(s) 205, 241, 388
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 6 cut(s) 86, 259, 323, 327, 451, 460
Mph1103I ATGCAT 1 cut(s) 594
MroI TCCGGA 1 cut(s) 452
MspA1I CMGCKG 1 cut(s) 183
MspI CCGG 3 cut(s) 253, 453, 753
MspR9I CCNGG 4 cut(s) 4, 253, 517, 715
MvaI CCWGG 3 cut(s) 4, 517, 715
MvnI CGCG 2 cut(s) 183, 647
MwoI GCNNNNNNNGC 1 cut(s) 421
NciI CCSGG 1 cut(s) 253
NdeII GATC 2 cut(s) 407, 615
NheI GCTAGC 1 cut(s) 693
NlaIII CATG 4 cut(s) 192, 219, 478, 592
NlaIV GGNNCC 1 cut(s) 747
NmuCI GTSAC 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 594
NspI RCATGY 1 cut(s) 592
PagI TCATGA 1 cut(s) 215
PfeI GAWTC 4 cut(s) 261, 606, 625, 671
PfoI TCCNGGA 1 cut(s) 251
PkrI GCNGC 1 cut(s) 500
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 3 cut(s) 2, 515, 713
PspGI CCWGG 3 cut(s) 2, 515, 713
PspN4I GGNNCC 1 cut(s) 747
PspPI GGNCC 2 cut(s) 185, 746
RsaI GTAC 4 cut(s) 174, 433, 462, 574
RsaNI GTAC 4 cut(s) 173, 432, 461, 573
SacII CCGCGG 1 cut(s) 184
SatI GCNGC 1 cut(s) 499
Sau3AI GATC 2 cut(s) 407, 615
Sau96I GGNCC 2 cut(s) 185, 746
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 4 cut(s) 4, 253, 517, 715
SduI GDGCHC 2 cut(s) 145, 653
SfaNI GCATC 1 cut(s) 719
Sfr303I CCGCGG 1 cut(s) 184
SgrBI CCGCGG 1 cut(s) 184
SinI GGWCC 2 cut(s) 185, 746
Sse9I AATT 3 cut(s) 205, 241, 388
SsiI CCGC 3 cut(s) 181, 183, 645
SspI AATATT 2 cut(s) 18, 567
SspMI CTAG 2 cut(s) 480, 694
StyD4I CCNGG 4 cut(s) 2, 251, 515, 713
StyI CCWWGG 1 cut(s) 416
TaaI ACNGT 4 cut(s) 177, 368, 509, 554
TaiI ACGT 3 cut(s) 174, 578, 656
TasI AATT 3 cut(s) 205, 241, 388
TatI WGTACW 2 cut(s) 431, 460
TfiI GAWTC 4 cut(s) 261, 606, 625, 671
TscAI CASTG 4 cut(s) 371, 512, 563, 681
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 1 cut(s) 498
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 4 cut(s) 59, 224, 232, 619
TspGWI ACGGA 1 cut(s) 738
TspRI CASTG 4 cut(s) 371, 512, 563, 681
VneI GTGCAC 1 cut(s) 649
VpaK11BI GGWCC 2 cut(s) 185, 746
XceI RCATGY 1 cut(s) 592
XmiI GTMKAC 2 cut(s) 161, 757
XspI CTAG 2 cut(s) 480, 694
ZrmI AGTACT 1 cut(s) 433
Zsp2I ATGCAT 1 cut(s) 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.