Rh4BG299700

resistance protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0025700
Physical Location & Seq
Forward (+)
47093616 .. 47094281
666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG299700.1

Sequence Viewer

Length: 666 bp
ATGAGTTTCTCTCGGTTCTATTTTCAGGATTATATCTACCGCGATTATGGATTTGACTATTTTATAATTGCTGACACTGAAAAATTTGAAATTCCAAAATGGTTCCGTCGGAGTAGTGGCTCTTCTATAAGAATTCCATTACCTCCAGATTTCGACTGCAACAGTACATGGATGGGAGTGGCTCTGTTTGTTTCTTATGAATTGCATGGCAATGTGGATGAAACTGAAAACCAACGGGAATGGGAAGAGGCAAGGGAAGGCATATTAAAGAGCAGTTACCAATACAGTTGTCATATCTACACAAATGATGATGATTCTCTTGAAAGTCCCCTGGTGCGTAAACTAAATAATTGCCGTATTGTTGGACCTGGATCATACCAATATTGGTTCTACATACCAAGACGGGAGTTAGCAAAAAGGTTGAATAAAGGCTCCATCCGAGCTGAAATAATACCAGAGGCGAATGTGAAAGAGTGTGGGGCGAGACTAATATACTCTCACGATGTGCCCAACTTTATTCAGAGTCTACTCCAGCCGTACAGTCCCGCGGATCATGATGTTATTGGTGATTATAAGTTGCGAAACCCGGACAAAAGTATCAGCACAAAGTGCTTCTTCTCTGGACCTAGCGGCATTTTCCAAGAAGAAAAGAACAGTACGTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_3 LRR_8 NB-ARC TIR

Protein Analysis

221

Amino Acids

25.88

Weight (kDa)

5.47

Isoelectric Point (pI)

47.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 30 - 169 9.8e-08 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025700)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8449195.1_g000001
rosa_samantha Rh4BG299700 Rh4DG296700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 65, 573
AccI GTMKAC 1 cut(s) 526
AccII CGCG 2 cut(s) 42, 548
AciI CCGC 4 cut(s) 40, 546, 548, 630
AclWI GGATC 2 cut(s) 379, 558
AcsI RAATTY 3 cut(s) 83, 90, 132
AdeI CACNNNGTG 2 cut(s) 505, 609
AfaI GTAC 4 cut(s) 166, 539, 658, 662
AgsI TTSAA 3 cut(s) 89, 323, 424
AjnI CCWGG 2 cut(s) 330, 367
AluBI AGCT 1 cut(s) 443
AluI AGCT 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 478
AlwI GGATC 2 cut(s) 379, 558
ApoI RAATTY 3 cut(s) 83, 90, 132
AspS9I GGNCC 2 cut(s) 365, 623
AsuC2I CCSGG 1 cut(s) 587
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 2 cut(s) 365, 623
BaeGI GKGCMC 1 cut(s) 510
BaeI ACNNNNGTAYC 2 cut(s) 580, 613
BarI GAAGNNNNNNTAC 2 cut(s) 106, 138
BccI CCATC 2 cut(s) 166, 443
BceAI ACGGC 2 cut(s) 339, 520
BciT130I CCWGG 2 cut(s) 332, 369
BcnI CCSGG 1 cut(s) 587
BcoDI GTCTC 1 cut(s) 478
BfaI CTAG 1 cut(s) 627
BisI GCNGC 1 cut(s) 631
BlsI GCNGC 1 cut(s) 632
Bme1390I CCNGG 3 cut(s) 332, 369, 587
Bme18I GGWCC 2 cut(s) 365, 623
BmgT120I GGNCC 2 cut(s) 365, 623
BmiI GGNNCC 2 cut(s) 104, 433
BmrFI CCNGG 3 cut(s) 332, 369, 587
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 129, 515
BpuMI CCSGG 1 cut(s) 587
BsaAI YACGTR 1 cut(s) 660
BsaJI CCNNGG 2 cut(s) 330, 546
Bse3DI GCAATG 1 cut(s) 217
BseBI CCWGG 2 cut(s) 332, 369
BseDI CCNNGG 2 cut(s) 330, 546
BseGI GGATG 3 cut(s) 177, 223, 435
BseMI GCAATG 1 cut(s) 217
BseSI GKGCMC 1 cut(s) 510
Bsh1236I CGCG 2 cut(s) 42, 548
BsiSI CCGG 1 cut(s) 587
BslFI GGGAC 2 cut(s) 312, 528
BsmAI GTCTC 1 cut(s) 478
BsmFI GGGAC 2 cut(s) 312, 528
Bsp1286I GDGCHC 1 cut(s) 510
Bsp143I GATC 2 cut(s) 371, 550
BspACI CCGC 4 cut(s) 40, 546, 548, 630
BspFNI CGCG 2 cut(s) 42, 548
BspHI TCATGA 1 cut(s) 553
BspLI GGNNCC 2 cut(s) 104, 433
BspPI GGATC 2 cut(s) 379, 558
BspQI GCTCTTC 1 cut(s) 127
BsrDI GCAATG 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 330, 546
BssMI GATC 2 cut(s) 371, 550
Bst2UI CCWGG 2 cut(s) 332, 369
Bst4CI ACNGT 4 cut(s) 164, 287, 542, 656
Bst6I CTCTTC 2 cut(s) 127, 240
BstAPI GCANNNNNTGC 1 cut(s) 609
BstBAI YACGTR 1 cut(s) 660
BstDSI CCRYGG 1 cut(s) 546
BstF5I GGATG 3 cut(s) 177, 223, 435
BstFNI CGCG 2 cut(s) 42, 548
BstKTI GATC 2 cut(s) 374, 553
BstMAI GTCTC 1 cut(s) 478
BstMBI GATC 2 cut(s) 371, 550
BstMWI GCNNNNNNNGC 1 cut(s) 609
BstNI CCWGG 2 cut(s) 332, 369
BstSCI CCNGG 3 cut(s) 330, 367, 585
BstSLI GKGCMC 1 cut(s) 510
BstSNI TACGTA 1 cut(s) 660
BstUI CGCG 2 cut(s) 42, 548
BtgI CCRYGG 1 cut(s) 546
BtsCI GGATG 3 cut(s) 177, 223, 435
BtsIMutI CAGTG 1 cut(s) 75
CciI TCATGA 1 cut(s) 553
Cfr13I GGNCC 2 cut(s) 365, 623
Cfr42I CCGCGG 1 cut(s) 549
Csp6I GTAC 4 cut(s) 165, 538, 657, 661
CviAII CATG 3 cut(s) 168, 206, 554
CviJI RGCY 5 cut(s) 120, 182, 432, 443, 535
CviKI_1 RGCY 5 cut(s) 120, 182, 432, 443, 535
CviQI GTAC 4 cut(s) 165, 538, 657, 661
DpnI GATC 2 cut(s) 373, 552
DpnII GATC 2 cut(s) 371, 550
DraIII CACNNNGTG 2 cut(s) 505, 609
Eam1104I CTCTTC 2 cut(s) 127, 240
EarI CTCTTC 2 cut(s) 127, 240
Eco105I TACGTA 1 cut(s) 660
Eco47I GGWCC 2 cut(s) 365, 623
EcoRI GAATTC 1 cut(s) 132
EcoRII CCWGG 2 cut(s) 330, 367
FaeI CATG 3 cut(s) 171, 209, 557
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 2 cut(s) 312, 528
FatI CATG 3 cut(s) 167, 205, 553
FauI CCCGC 1 cut(s) 553
FblI GTMKAC 1 cut(s) 526
Fnu4HI GCNGC 1 cut(s) 631
FokI GGATG 3 cut(s) 184, 230, 422
Fsp4HI GCNGC 1 cut(s) 631
FspBI CTAG 1 cut(s) 627
GluI GCNGC 1 cut(s) 631
GsuI CTGGAG 2 cut(s) 129, 515
HapII CCGG 1 cut(s) 587
Hin1II CATG 3 cut(s) 171, 209, 557
HinfI GANTC 2 cut(s) 314, 523
HpaII CCGG 1 cut(s) 587
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 2 cut(s) 341, 527
Hpy188I TCNGA 3 cut(s) 111, 440, 522
Hpy188III TCNNGA 6 cut(s) 26, 146, 320, 500, 554, 621
Hpy8I GTNNAC 2 cut(s) 341, 527
Hpy99I CGWCG 1 cut(s) 111
HpyAV CCTTC 1 cut(s) 251
HpyCH4III ACNGT 4 cut(s) 164, 287, 542, 656
HpyCH4IV ACGT 1 cut(s) 659
HpyCH4V TGCA 2 cut(s) 159, 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 609
HpySE526I ACGT 1 cut(s) 659
Hsp92II CATG 3 cut(s) 171, 209, 557
KspI CCGCGG 1 cut(s) 549
Kzo9I GATC 2 cut(s) 371, 550
LguI GCTCTTC 1 cut(s) 127
LmnI GCTCC 1 cut(s) 437
MaeI CTAG 1 cut(s) 627
MaeII ACGT 1 cut(s) 659
MaeIII GTNAC 1 cut(s) 275
MalI GATC 2 cut(s) 373, 552
MboI GATC 2 cut(s) 371, 550
MboII GAAGA 4 cut(s) 114, 257, 607, 656
MhlI GDGCHC 1 cut(s) 510
MluCI AATT 6 cut(s) 66, 83, 90, 132, 200, 349
MlyI GAGTC 1 cut(s) 532
MmeI TCCRAC 2 cut(s) 89, 343
MnlI CCTC 3 cut(s) 153, 241, 451
MseI TTAA 1 cut(s) 266
MslI CAYNNNNRTG 1 cut(s) 210
MspA1I CMGCKG 1 cut(s) 548
MspI CCGG 1 cut(s) 587
MspR9I CCNGG 3 cut(s) 332, 369, 587
MvaI CCWGG 2 cut(s) 332, 369
MvnI CGCG 2 cut(s) 42, 548
MwoI GCNNNNNNNGC 1 cut(s) 609
NciI CCSGG 1 cut(s) 587
NdeII GATC 2 cut(s) 371, 550
NlaIII CATG 3 cut(s) 171, 209, 557
NlaIV GGNNCC 2 cut(s) 104, 433
PagI TCATGA 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 314
PkrI GCNGC 1 cut(s) 632
PleI GAGTC 1 cut(s) 531
PpsI GAGTC 1 cut(s) 531
Ppu21I YACGTR 1 cut(s) 660
PsiI TTATAA 2 cut(s) 65, 573
Psp6I CCWGG 2 cut(s) 330, 367
PspGI CCWGG 2 cut(s) 330, 367
PspN4I GGNNCC 2 cut(s) 104, 433
PspPI GGNCC 2 cut(s) 365, 623
PsrI GAACNNNNNNTAC 1 cut(s) 644
RsaI GTAC 4 cut(s) 166, 539, 658, 662
RsaNI GTAC 4 cut(s) 165, 538, 657, 661
RseI CAYNNNNRTG 1 cut(s) 210
SacII CCGCGG 1 cut(s) 549
SapI GCTCTTC 1 cut(s) 127
SaqAI TTAA 1 cut(s) 266
SatI GCNGC 1 cut(s) 631
Sau3AI GATC 2 cut(s) 371, 550
Sau96I GGNCC 2 cut(s) 365, 623
SchI GAGTC 1 cut(s) 532
ScrFI CCNGG 3 cut(s) 332, 369, 587
SduI GDGCHC 1 cut(s) 510
SetI ASST 6 cut(s) 145, 370, 422, 445, 628, 662
Sfr303I CCGCGG 1 cut(s) 549
SgrBI CCGCGG 1 cut(s) 549
SinI GGWCC 2 cut(s) 365, 623
SmiMI CAYNNNNRTG 1 cut(s) 210
SnaBI TACGTA 1 cut(s) 660
Sse9I AATT 6 cut(s) 66, 83, 90, 132, 200, 349
SsiI CCGC 4 cut(s) 40, 546, 548, 630
SspI AATATT 1 cut(s) 383
SspMI CTAG 1 cut(s) 627
StyD4I CCNGG 3 cut(s) 330, 367, 585
TaaI ACNGT 4 cut(s) 164, 287, 542, 656
TaiI ACGT 1 cut(s) 662
TaqI TCGA 1 cut(s) 153
TasI AATT 6 cut(s) 66, 83, 90, 132, 200, 349
TatI WGTACW 1 cut(s) 164
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 1 cut(s) 314
Tru1I TTAA 1 cut(s) 266
Tru9I TTAA 1 cut(s) 266
TscAI CASTG 1 cut(s) 82
TspDTI ATGAA 2 cut(s) 213, 234
TspGWI ACGGA 1 cut(s) 95
TspRI CASTG 1 cut(s) 82
VpaK11BI GGWCC 2 cut(s) 365, 623
XapI RAATTY 3 cut(s) 83, 90, 132
XmiI GTMKAC 1 cut(s) 526
XspI CTAG 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.