Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474615.1

Orthogroup ID

OG0008965

Physical Location & Seq

Genomic Coordinates Reverse (-)

41 .. 2086

Gene Structure 2046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474615.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1193 bp

agagtgtggtttcaggtccaggatgttcctcaattgggtatggagcagcagaggagataggccctttcttccctcaaaacagcgccaaacctaagctcaagtacaacccttacacctggaacaatgctgccaatttattgtttttggagtctcctgtgggtgtcggattttcttacaccaatactaccagtgatatcaaggaactaggggacaccattacagctgaggattcatacaattttctcatcaactggtttaaaaggtttccacagttcaagtcccatgacttctatatcactggagaaagctatgcagggcactatgttccacaactgtctgagctcattttcgaccgtaacaaaaaagcatccaaggagaactatataaacttcaagggattcatgattggtaatgcagcaatagacgaggaatcagatcagaaaggattgattgattatgcgtgggatcacgcggtgatttctgatcggctgtacagtgacattaggagagaatgcaacttcagtgagcaaaacgtatccaaagagtgcaataagctgatggatgagtactttgacgtgtacaaaatcatagacatgtacagcttgtacactcccatttgtgtcaatgataataaaactctgtctgtccccaccagtcagcaacacttccgcgccattgaaggagctcccgctttgttttctagagctgaaggacggggcaaaagaccagaagggtatgacccttgtgcatcagattacacttatttgtacttgaacaatccagaagtccaaaaggctctgcatgccaatgtcaccggcatttcctatccgtggattcactgcagtgataacatcaccttctggaaggatgcaccaccatcagttcttcctgtgattcgaaagcttgtagaaggtggtctccgagtctgggtttatagtggtgatactgatggcagagttccagtgacatcaactagatatgcgttgaagaaactcggattgaagatcaagcaagattggactccttggtacaatagcaaacaggttggcggatggacagttgcatacgacggtcttatgtttgtgacaattagaggcgcaggtcatgaagttccagtttttgcaccaaggcaggcgctcctcctcttagaacacttcttggctgataggagtctcccaccaaaaccattttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

396

Amino Acids

44.82

Weight (kDa)

6.1

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23210 AT5G23210 AT5G23210 AT5G23210 AT5G23210
fragaria_vesca	FvH4_4g37000 FvH4_4g37000 FvH4_4g37000 FvH4_4g37000
malus_domestica	MD13G1004200.v1.1 MD16G1003300.v1.1
prunus_persica	Prupe.1G348300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446791
rosa_laevigata	RLG00000005631
rosa_multiflora	Rmu_co8474615.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387120
rosa_rugosa	Rorug04G0374600
rosa_samantha	Rh4AG436100 Rh4BG444900 Rh4CG462200 Rh4DG443900
rosa_wichuraiana	Rw4G037280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1090
AccII	CGCG	2 cut(s)	472, 671
AciI	CCGC	4 cut(s)	472, 669, 689, 1049
AclWI	GGATC	1 cut(s)	473
AcuI	CTGAAG	2 cut(s)	504, 728
AdeI	CACNNNGTG	1 cut(s)	474
AfaI	GTAC	8 cut(s)	103, 493, 568, 580, 598, 607, 769, 1030
AfiI	CCNNNNNNNGG	3 cut(s)	35, 830, 927
AflIII	ACRYGT	2 cut(s)	575, 593
AgsI	TTSAA	6 cut(s)	276, 393, 679, 774, 987, 1002
AjiI	CACGTC	1 cut(s)	576
AjnI	CCWGG	2 cut(s)	18, 115
AleI	CACNNNNGTG	1 cut(s)	842
AluBI	AGCT	9 cut(s)	96, 223, 308, 342, 555, 602, 685, 706, 903
AluI	AGCT	9 cut(s)	96, 223, 308, 342, 555, 602, 685, 706, 903
Alw21I	GWGCWC	2 cut(s)	344, 687
Alw26I	GTCTC	3 cut(s)	155, 922, 1177
AlwI	GGATC	1 cut(s)	473
AoxI	GGCC	1 cut(s)	60
ApeKI	GCWGC	3 cut(s)	46, 127, 415
AspLEI	GCGC	4 cut(s)	85, 673, 1099, 1137
AspS9I	GGNCC	2 cut(s)	16, 61
AsuHPI	GGTGA	4 cut(s)	486, 804, 846, 952
AsuII	TTCGAA	1 cut(s)	897
AvaII	GGWCC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	320
BanII	GRGCYC	2 cut(s)	344, 687
Bbv12I	GWGCWC	2 cut(s)	344, 687
BbvCI	CCTCAGC	1 cut(s)	224
BbvI	GCAGC	3 cut(s)	58, 114, 427
BccI	CCATC	4 cut(s)	552, 885, 943, 1046
BciT130I	CCWGG	2 cut(s)	20, 117
BciVI	GTATCC	1 cut(s)	546
BcoDI	GTCTC	3 cut(s)	155, 922, 1177
BfaI	CTAG	3 cut(s)	205, 701, 974
BfmI	CTRYAG	1 cut(s)	840
BfoI	RGCGCY	2 cut(s)	86, 1138
BfuAI	ACCTGC	1 cut(s)	1090
BfuI	GTATCC	1 cut(s)	546
BisI	GCNGC	3 cut(s)	47, 128, 416
BlsI	GCNGC	3 cut(s)	48, 129, 417
BmcAI	AGTACT	1 cut(s)	568
Bme1390I	CCNGG	2 cut(s)	20, 117
Bme18I	GGWCC	1 cut(s)	16
BmgBI	CACGTC	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	16, 61
BmrFI	CCNGG	2 cut(s)	20, 117
BmsI	GCATC	3 cut(s)	376, 757, 858
BpmI	CTGGAG	1 cut(s)	320
Bpu10I	CCTNAGC	2 cut(s)	92, 224
Bpu14I	TTCGAA	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	82
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	4 cut(s)	371, 829, 1024, 1126
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 830, 927
Bse118I	RCCGGY	1 cut(s)	814
Bse1I	ACTGG	6 cut(s)	188, 256, 303, 653, 961, 1114
BseBI	CCWGG	2 cut(s)	20, 117
BseDI	CCNNGG	4 cut(s)	371, 829, 1024, 1126
BseGI	GGATG	5 cut(s)	28, 367, 567, 873, 1057
BseLI	CCNNNNNNNGG	3 cut(s)	35, 830, 927
BseMII	CTCAG	2 cut(s)	215, 329
BseNI	ACTGG	6 cut(s)	188, 256, 303, 653, 961, 1114
BseRI	GAGGAG	3 cut(s)	67, 1129, 1132
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	58, 114, 427
Bsh1236I	CGCG	2 cut(s)	472, 671
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	1 cut(s)	62
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	2 cut(s)	344, 687
BsiSI	CCGG	1 cut(s)	815
BslFI	GGGAC	3 cut(s)	223, 264, 631
BslI	CCNNNNNNNGG	3 cut(s)	35, 830, 927
BsmAI	GTCTC	3 cut(s)	155, 922, 1177
BsmFI	GGGAC	3 cut(s)	223, 264, 631
BsmI	GAATGC	1 cut(s)	517
BsnI	GGCC	1 cut(s)	62
Bso31I	GGTCTC	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	897
Bsp1286I	GDGCHC	3 cut(s)	320, 344, 687
Bsp1407I	TGTACA	4 cut(s)	491, 578, 596, 605
Bsp143I	GATC	4 cut(s)	435, 465, 483, 1004
BspACI	CCGC	4 cut(s)	472, 669, 689, 1049
BspANI	GGCC	1 cut(s)	62
BspCNI	CTCAG	2 cut(s)	216, 330
BspFNI	CGCG	2 cut(s)	472, 671
BspHI	TCATGA	2 cut(s)	401, 1104
BspMAI	CTGCAG	1 cut(s)	844
BspMI	ACCTGC	1 cut(s)	1090
BspPI	GGATC	1 cut(s)	473
BspT104I	TTCGAA	1 cut(s)	897
BspTNI	GGTCTC	1 cut(s)	922
BsrFI	RCCGGY	1 cut(s)	814
BsrGI	TGTACA	4 cut(s)	491, 578, 596, 605
BsrI	ACTGG	6 cut(s)	188, 256, 303, 653, 961, 1114
BssAI	RCCGGY	1 cut(s)	814
BssECI	CCNNGG	4 cut(s)	371, 829, 1024, 1126
BssMI	GATC	4 cut(s)	435, 465, 483, 1004
BssT1I	CCWWGG	3 cut(s)	371, 1024, 1126
Bst2UI	CCWGG	2 cut(s)	20, 117
Bst4CI	ACNGT	6 cut(s)	272, 335, 355, 496, 1059, 1072
BstAUI	TGTACA	4 cut(s)	491, 578, 596, 605
BstBI	TTCGAA	1 cut(s)	897
BstC8I	GCNNGC	2 cut(s)	803, 1133
BstDEI	CTNAG	4 cut(s)	92, 224, 338, 1146
BstDSI	CCRYGG	1 cut(s)	829
BstF5I	GGATG	5 cut(s)	28, 367, 567, 873, 1057
BstFNI	CGCG	2 cut(s)	472, 671
BstH2I	RGCGCY	2 cut(s)	86, 1138
BstHHI	GCGC	4 cut(s)	85, 673, 1099, 1137
BstKTI	GATC	4 cut(s)	438, 468, 486, 1007
BstMAI	GTCTC	3 cut(s)	155, 922, 1177
BstMBI	GATC	4 cut(s)	435, 465, 483, 1004
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	1 cut(s)	802
BstNI	CCWGG	2 cut(s)	20, 117
BstNSI	RCATGY	2 cut(s)	597, 805
BstSCI	CCNGG	2 cut(s)	18, 115
BstSFI	CTRYAG	1 cut(s)	840
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	2 cut(s)	472, 671
BstV1I	GCAGC	3 cut(s)	58, 114, 427
BsuI	GTATCC	1 cut(s)	546
BsuRI	GGCC	1 cut(s)	62
BtgI	CCRYGG	1 cut(s)	829
BtrI	CACGTC	1 cut(s)	576
BtsCI	GGATG	5 cut(s)	28, 367, 567, 873, 1057
BtsI	GCAGTG	2 cut(s)	837, 849
BtsIMutI	CAGTG	7 cut(s)	195, 296, 501, 528, 837, 849, 968
BveI	ACCTGC	1 cut(s)	1090
Cac8I	GCNNGC	2 cut(s)	803, 1133
CciI	TCATGA	2 cut(s)	401, 1104
CfoI	GCGC	4 cut(s)	85, 673, 1099, 1137
Cfr10I	RCCGGY	1 cut(s)	814
Cfr13I	GGNCC	2 cut(s)	16, 61
Csp6I	GTAC	8 cut(s)	102, 492, 567, 579, 597, 606, 768, 1029
CviAII	CATG	5 cut(s)	283, 402, 594, 802, 1105
CviQI	GTAC	8 cut(s)	102, 492, 567, 579, 597, 606, 768, 1029
DdeI	CTNAG	4 cut(s)	92, 224, 338, 1146
DpnI	GATC	4 cut(s)	437, 467, 485, 1006
DpnII	GATC	4 cut(s)	435, 465, 483, 1004
DraI	TTTAAA	1 cut(s)	258
DraIII	CACNNNGTG	1 cut(s)	474
EciI	GGCGGA	1 cut(s)	1064
Ecl136II	GAGCTC	2 cut(s)	342, 685
Eco130I	CCWWGG	3 cut(s)	371, 1024, 1126
Eco24I	GRGCYC	2 cut(s)	344, 687
Eco31I	GGTCTC	1 cut(s)	922
Eco32I	GATATC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	16
Eco53kI	GAGCTC	2 cut(s)	342, 685
Eco57I	CTGAAG	2 cut(s)	504, 728
EcoICRI	GAGCTC	2 cut(s)	342, 685
EcoO109I	RGGNCCY	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	18, 115
EcoRV	GATATC	1 cut(s)	195
EcoT14I	CCWWGG	3 cut(s)	371, 1024, 1126
EcoT38I	GRGCYC	2 cut(s)	344, 687
ErhI	CCWWGG	3 cut(s)	371, 1024, 1126
FaeI	CATG	5 cut(s)	286, 405, 597, 805, 1108
FaqI	GGGAC	3 cut(s)	223, 264, 631
FatI	CATG	5 cut(s)	282, 401, 593, 801, 1104
FauI	CCCGC	1 cut(s)	696
Fnu4HI	GCNGC	3 cut(s)	47, 128, 416
FokI	GGATG	5 cut(s)	35, 354, 574, 880, 1064
FriOI	GRGCYC	2 cut(s)	344, 687
Fsp4HI	GCNGC	3 cut(s)	47, 128, 416
FspBI	CTAG	3 cut(s)	205, 701, 974
GlaI	GCGC	4 cut(s)	84, 672, 1098, 1136
GluI	GCNGC	3 cut(s)	47, 128, 416
GsuI	CTGGAG	1 cut(s)	320
HaeII	RGCGCY	2 cut(s)	86, 1138
HaeIII	GGCC	1 cut(s)	62
HapII	CCGG	1 cut(s)	815
HhaI	GCGC	4 cut(s)	85, 673, 1099, 1137
Hin1II	CATG	5 cut(s)	286, 405, 597, 805, 1108
Hin6I	GCGC	4 cut(s)	83, 671, 1097, 1135
HinP1I	GCGC	4 cut(s)	83, 671, 1097, 1135
HindIII	AAGCTT	1 cut(s)	901
HinfI	GANTC	9 cut(s)	148, 229, 398, 430, 834, 894, 923, 1020, 1170
HpaII	CCGG	1 cut(s)	815
HphI	GGTGA	4 cut(s)	486, 804, 846, 952
Hpy166II	GTNNAC	2 cut(s)	579, 608
Hpy188I	TCNGA	8 cut(s)	166, 339, 435, 440, 483, 753, 922, 997
Hpy188III	TCNNGA	5 cut(s)	402, 701, 781, 861, 1105
Hpy8I	GTNNAC	2 cut(s)	579, 608
Hpy99I	CGWCG	1 cut(s)	1072
HpyAV	CCTTC	6 cut(s)	673, 703, 724, 858, 867, 904
HpyCH4III	ACNGT	6 cut(s)	272, 335, 355, 496, 1059, 1072
HpyCH4IV	ACGT	2 cut(s)	533, 575
HpyF10VI	GCNNNNNNNGC	1 cut(s)	802
HpyF3I	CTNAG	4 cut(s)	92, 224, 338, 1146
HpySE526I	ACGT	2 cut(s)	533, 575
Hsp92II	CATG	5 cut(s)	286, 405, 597, 805, 1108
HspAI	GCGC	4 cut(s)	83, 671, 1097, 1135
Kzo9I	GATC	4 cut(s)	435, 465, 483, 1004
LmnI	GCTCC	4 cut(s)	43, 682, 690, 1142
Lsp1109I	GCAGC	3 cut(s)	58, 114, 427
LweI	GCATC	3 cut(s)	376, 757, 858
MaeI	CTAG	3 cut(s)	205, 701, 974
MaeII	ACGT	2 cut(s)	533, 575
MaeIII	GTNAC	5 cut(s)	355, 496, 810, 963, 1083
MalI	GATC	4 cut(s)	437, 467, 485, 1006
MboI	GATC	4 cut(s)	435, 465, 483, 1004
MboII	GAAGA	4 cut(s)	60, 877, 999, 1014
MfeI	CAATTG	1 cut(s)	32
MhlI	GDGCHC	3 cut(s)	320, 344, 687
MluCI	AATT	4 cut(s)	32, 132, 237, 1088
MlyI	GAGTC	4 cut(s)	157, 932, 1014, 1179
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	8 cut(s)	39, 45, 83, 219, 420, 1087, 1150, 1153
MseI	TTAA	2 cut(s)	257, 1191
MslI	CAYNNNNRTG	3 cut(s)	592, 806, 842
MspA1I	CMGCKG	1 cut(s)	223
MspI	CCGG	1 cut(s)	815
MspR9I	CCNGG	2 cut(s)	20, 117
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	517
MvaI	CCWGG	2 cut(s)	20, 117
MvnI	CGCG	2 cut(s)	472, 671
MwoI	GCNNNNNNNGC	1 cut(s)	802
NdeII	GATC	4 cut(s)	435, 465, 483, 1004
NlaIII	CATG	5 cut(s)	286, 405, 597, 805, 1108
NmuCI	GTSAC	4 cut(s)	496, 810, 963, 1083
NspI	RCATGY	2 cut(s)	597, 805
NspV	TTCGAA	1 cut(s)	897
OliI	CACNNNNGTG	1 cut(s)	842
PaeI	GCATGC	1 cut(s)	805
PagI	TCATGA	2 cut(s)	401, 1104
PciI	ACATGT	1 cut(s)	593
PctI	GAATGC	1 cut(s)	517
PfeI	GAWTC	5 cut(s)	229, 398, 430, 834, 894
PfoI	TCCNGGA	1 cut(s)	18
PkrI	GCNGC	3 cut(s)	48, 129, 417
PleI	GAGTC	4 cut(s)	156, 931, 1014, 1178
PpsI	GAGTC	4 cut(s)	156, 931, 1014, 1178
PscI	ACATGT	1 cut(s)	593
Psp124BI	GAGCTC	2 cut(s)	344, 687
Psp6I	CCWGG	2 cut(s)	18, 115
PspGI	CCWGG	2 cut(s)	18, 115
PspPI	GGNCC	2 cut(s)	16, 61
PstI	CTGCAG	1 cut(s)	844
PvuII	CAGCTG	1 cut(s)	223
RsaI	GTAC	8 cut(s)	103, 493, 568, 580, 598, 607, 769, 1030
RsaNI	GTAC	8 cut(s)	102, 492, 567, 579, 597, 606, 768, 1029
RseI	CAYNNNNRTG	3 cut(s)	592, 806, 842
SacI	GAGCTC	2 cut(s)	344, 687
SaqAI	TTAA	2 cut(s)	257, 1191
SatI	GCNGC	3 cut(s)	47, 128, 416
Sau3AI	GATC	4 cut(s)	435, 465, 483, 1004
Sau96I	GGNCC	2 cut(s)	16, 61
ScaI	AGTACT	1 cut(s)	568
SchI	GAGTC	4 cut(s)	157, 932, 1014, 1179
ScrFI	CCNGG	2 cut(s)	20, 117
SduI	GDGCHC	3 cut(s)	320, 344, 687
SfaNI	GCATC	3 cut(s)	376, 757, 858
SfcI	CTRYAG	1 cut(s)	840
SfuI	TTCGAA	1 cut(s)	897
SinI	GGWCC	1 cut(s)	16
SmiMI	CAYNNNNRTG	3 cut(s)	592, 806, 842
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
SphI	GCATGC	1 cut(s)	805
Sse9I	AATT	4 cut(s)	32, 132, 237, 1088
SsiI	CCGC	4 cut(s)	472, 669, 689, 1049
SspMI	CTAG	3 cut(s)	205, 701, 974
SstI	GAGCTC	2 cut(s)	344, 687
StyD4I	CCNGG	2 cut(s)	18, 115
StyI	CCWWGG	3 cut(s)	371, 1024, 1126
TaaI	ACNGT	6 cut(s)	272, 335, 355, 496, 1059, 1072
TaiI	ACGT	2 cut(s)	536, 578
TaqI	TCGA	2 cut(s)	350, 897
TasI	AATT	4 cut(s)	32, 132, 237, 1088
TatI	WGTACW	7 cut(s)	101, 491, 566, 578, 596, 605, 767
TfiI	GAWTC	5 cut(s)	229, 398, 430, 834, 894
Tru1I	TTAA	2 cut(s)	257, 1191
Tru9I	TTAA	2 cut(s)	257, 1191
TscAI	CASTG	7 cut(s)	195, 303, 501, 528, 844, 849, 968
TseFI	GTSAC	4 cut(s)	496, 810, 963, 1083
TseI	GCWGC	3 cut(s)	46, 127, 415
Tsp45I	GTSAC	4 cut(s)	496, 810, 963, 1083
TspDTI	ATGAA	3 cut(s)	221, 390, 1121
TspGWI	ACGGA	1 cut(s)	818
TspRI	CASTG	7 cut(s)	195, 303, 501, 528, 844, 849, 968
VpaK11BI	GGWCC	1 cut(s)	16
XbaI	TCTAGA	1 cut(s)	700
XceI	RCATGY	2 cut(s)	597, 805
XspI	CTAG	3 cut(s)	205, 701, 974
ZrmI	AGTACT	1 cut(s)	568

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.