Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008965

Physical Location & Seq

Genomic Coordinates Reverse (-)

54528324 .. 54529100

Gene Structure 777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0374600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGACGTTCTGACGGAGGTTCCGCCGCCGTCTCGGTTCTTCCAGGAAGATCTGAACAACTTCACGCCTCCGTCACCGCCCATTCCCTCTCCTTTCCTCGTTTTCCCAACCGCCGCCGACCTCGACCTTCCCCTCCGCCCCTCCCTCCTCATCATCGCCATCTCCTCCCCCTCCCTCCAGCTCTTCCACACCGCCGCCTCCAAAACCCTCATCGGAACCCTAATCCTCCCGGAAACCTCCTTCGCCGGAAACTCGGTCCAGCCCTCTCTCAAGGACAAGTCCTGCAACCTCTACTCCCTCGACGGCAACCGCCAGACCCTCCTCGTCTCGGTCCAGTGCCCTATCGCCGCCGCCGATCGGTGCCACGCCGTCGCCGAGCTGCTGGTTTCTCAGCACATCGTTCCGGAGAGGGTTCTGATTCTGGATTCCGTTCAGAATCGGAACTTCCGGGGCAAGCTTTCCAGGGACGAGGCGCTGGCGTTCAAGCTCGAAACGACGTCGGAGAGGAAGTCGAAATCTTTGAAATTGGAGTATTTGCCTTCGGCGAGTGTGGTGGATGGGTTGGGTGCTGCTCTGTTGGCCAAGTGTGAAATCAACAAGATCAAGGCGGTGCTTTGTGTCACCTGGCCGGAGTTTGGTGCCGCCGCGCTGGAGCTGATCAAGTCTAGGGTTTTGCCTGCTCTGGATTTGGGTCTGAGCTTCAAGTCTGATGCTGATGATTATGGAAGTTTGAGACAAGATAAGGATCCTTTTGATTCTGATTTGTATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009505 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0030312 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0071944 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

258

Amino Acids

28.09

Weight (kDa)

5.16

Isoelectric Point (pI)

44.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008965)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23210 AT5G23210 AT5G23210 AT5G23210 AT5G23210
fragaria_vesca	FvH4_4g37000 FvH4_4g37000 FvH4_4g37000 FvH4_4g37000
malus_domestica	MD13G1004200.v1.1 MD16G1003300.v1.1
prunus_persica	Prupe.1G348300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0446791
rosa_laevigata	RLG00000005631
rosa_multiflora	Rmu_co8474615.1_g000001
rosa_roxburghii	Rroxscaffold_5G00387120
rosa_rugosa	Rorug04G0374600
rosa_samantha	Rh4AG436100 Rh4BG444900 Rh4CG462200 Rh4DG443900
rosa_wichuraiana	Rw4G037280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	503
AccB1I	GGYRCC	2 cut(s)	363, 641
AccII	CGCG	1 cut(s)	650
AccIII	TCCGGA	1 cut(s)	406
AclWI	GGATC	2 cut(s)	743, 756
AcoI	YGGCCR	2 cut(s)	582, 629
AcyI	GRCGYC	1 cut(s)	500
AfiI	CCNNNNNNNGG	3 cut(s)	331, 360, 638
AgsI	TTSAA	3 cut(s)	487, 526, 706
AjnI	CCWGG	3 cut(s)	45, 464, 626
AluBI	AGCT	6 cut(s)	184, 382, 460, 490, 658, 702
AluI	AGCT	6 cut(s)	184, 382, 460, 490, 658, 702
Alw26I	GTCTC	3 cut(s)	39, 334, 730
AlwI	GGATC	2 cut(s)	743, 756
Aor13HI	TCCGGA	1 cut(s)	406
AoxI	GGCC	2 cut(s)	582, 629
ApeKI	GCWGC	2 cut(s)	382, 572
Asp700I	GAANNNNTTC	2 cut(s)	9, 62
AspLEI	GCGC	2 cut(s)	478, 652
AspS9I	GGNCC	2 cut(s)	259, 334
AsuC2I	CCSGG	2 cut(s)	233, 452
AsuHPI	GGTGA	2 cut(s)	69, 616
AvaII	GGWCC	2 cut(s)	259, 334
BaeGI	GKGCMC	1 cut(s)	344
BalI	TGGCCA	1 cut(s)	584
BamHI	GGATCC	1 cut(s)	748
BanI	GGYRCC	2 cut(s)	363, 641
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	369, 559
BccI	CCATC	2 cut(s)	170, 554
BceAI	ACGGC	3 cut(s)	16, 322, 356
BciT130I	CCWGG	3 cut(s)	47, 466, 628
BclI	TGATCA	1 cut(s)	660
BcnI	CCSGG	2 cut(s)	233, 452
BcoDI	GTCTC	3 cut(s)	39, 334, 730
BfaI	CTAG	1 cut(s)	669
BfoI	RGCGCY	1 cut(s)	479
BglII	AGATCT	1 cut(s)	52
BisI	GCNGC	9 cut(s)	29, 117, 198, 351, 354, 383, 573, 645, 648
BlsI	GCNGC	9 cut(s)	30, 118, 199, 352, 355, 384, 574, 646, 649
Bme1390I	CCNGG	5 cut(s)	47, 233, 452, 466, 628
Bme18I	GGWCC	2 cut(s)	259, 334
BmgT120I	GGNCC	2 cut(s)	259, 334
BmiI	GGNNCC	5 cut(s)	24, 220, 365, 643, 750
BmrFI	CCNGG	5 cut(s)	47, 233, 452, 466, 628
BmsI	GCATC	1 cut(s)	703
BpiI	GAAGAC	1 cut(s)	12
BpmI	CTGGAG	2 cut(s)	164, 674
BpuEI	CTTGAG	1 cut(s)	257
BpuMI	CCSGG	2 cut(s)	233, 452
BsaBI	GATNNNNATC	1 cut(s)	747
BsaHI	GRCGYC	1 cut(s)	500
BsaJI	CCNNGG	2 cut(s)	451, 465
BsaWI	WCCGGW	1 cut(s)	406
BsaXI	ACNNNNNCTCC	4 cut(s)	281, 311, 497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 360, 638
Bse1I	ACTGG	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	747
BseAI	TCCGGA	1 cut(s)	406
BseBI	CCWGG	3 cut(s)	47, 466, 628
BseDI	CCNNGG	2 cut(s)	451, 465
BseGI	GGATG	1 cut(s)	565
BseJI	GATNNNNATC	1 cut(s)	747
BseLI	CCNNNNNNNGG	3 cut(s)	331, 360, 638
BseMII	CTCAG	2 cut(s)	407, 689
BseNI	ACTGG	1 cut(s)	337
BseRI	GAGGAG	3 cut(s)	140, 157, 314
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	2 cut(s)	369, 559
Bsh1236I	CGCG	1 cut(s)	650
Bsh1285I	CGRYCG	1 cut(s)	361
BshFI	GGCC	2 cut(s)	584, 631
BshNI	GGYRCC	2 cut(s)	363, 641
BsiEI	CGRYCG	1 cut(s)	361
BsiSI	CCGG	5 cut(s)	233, 249, 407, 451, 632
BslFI	GGGAC	1 cut(s)	482
BslI	CCNNNNNNNGG	3 cut(s)	331, 360, 638
BsmAI	GTCTC	3 cut(s)	39, 334, 730
BsmBI	CGTCTC	2 cut(s)	39, 334
BsmFI	GGGAC	1 cut(s)	482
BsnI	GGCC	2 cut(s)	584, 631
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp13I	TCCGGA	1 cut(s)	406
Bsp143I	GATC	5 cut(s)	52, 358, 603, 660, 748
BspANI	GGCC	2 cut(s)	584, 631
BspCNI	CTCAG	2 cut(s)	406, 690
BspEI	TCCGGA	1 cut(s)	406
BspFNI	CGCG	1 cut(s)	650
BspLI	GGNNCC	5 cut(s)	24, 220, 365, 643, 750
BspPI	GGATC	2 cut(s)	743, 756
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	2 cut(s)	363, 641
BsrI	ACTGG	1 cut(s)	337
BssECI	CCNNGG	2 cut(s)	451, 465
BssMI	GATC	5 cut(s)	52, 358, 603, 660, 748
BssNI	GRCGYC	1 cut(s)	500
Bst2UI	CCWGG	3 cut(s)	47, 466, 628
Bst6I	CTCTTC	1 cut(s)	191
BstACI	GRCGYC	1 cut(s)	500
BstC8I	GCNNGC	3 cut(s)	458, 480, 681
BstDEI	CTNAG	2 cut(s)	393, 698
BstF5I	GGATG	1 cut(s)	565
BstFNI	CGCG	1 cut(s)	650
BstH2I	RGCGCY	1 cut(s)	479
BstHHI	GCGC	2 cut(s)	478, 652
BstKTI	GATC	5 cut(s)	55, 361, 606, 663, 751
BstMAI	GTCTC	3 cut(s)	39, 334, 730
BstMBI	GATC	5 cut(s)	52, 358, 603, 660, 748
BstMCI	CGRYCG	1 cut(s)	361
BstMWI	GCNNNNNNNGC	1 cut(s)	581
BstNI	CCWGG	3 cut(s)	47, 466, 628
BstSCI	CCNGG	5 cut(s)	45, 231, 450, 464, 626
BstSLI	GKGCMC	1 cut(s)	344
BstUI	CGCG	1 cut(s)	650
BstV1I	GCAGC	2 cut(s)	369, 559
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	2 cut(s)	52, 748
BstYI	RGATCY	2 cut(s)	52, 748
BsuRI	GGCC	2 cut(s)	584, 631
BtgZI	GCGATG	1 cut(s)	142
BtsCI	GGATG	1 cut(s)	565
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	458, 480, 681
CfoI	GCGC	2 cut(s)	478, 652
Cfr13I	GGNCC	2 cut(s)	259, 334
CviJI	RGCY	9 cut(s)	184, 265, 382, 460, 490, 584, 631, 658, 702
CviKI_1	RGCY	9 cut(s)	184, 265, 382, 460, 490, 584, 631, 658, 702
DdeI	CTNAG	2 cut(s)	393, 698
DpnI	GATC	5 cut(s)	54, 360, 605, 662, 750
DpnII	GATC	5 cut(s)	52, 358, 603, 660, 748
EaeI	YGGCCR	2 cut(s)	582, 629
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	2 cut(s)	15, 128
Eco47I	GGWCC	2 cut(s)	259, 334
EcoRII	CCWGG	3 cut(s)	45, 464, 626
Esp3I	CGTCTC	2 cut(s)	39, 334
FaiI	YATR	1 cut(s)	726
FaqI	GGGAC	1 cut(s)	482
FbaI	TGATCA	1 cut(s)	660
Fnu4HI	GCNGC	9 cut(s)	29, 117, 198, 351, 354, 383, 573, 645, 648
FokI	GGATG	1 cut(s)	572
Fsp4HI	GCNGC	9 cut(s)	29, 117, 198, 351, 354, 383, 573, 645, 648
FspBI	CTAG	1 cut(s)	669
GlaI	GCGC	2 cut(s)	477, 651
GluI	GCNGC	9 cut(s)	29, 117, 198, 351, 354, 383, 573, 645, 648
GsuI	CTGGAG	2 cut(s)	164, 674
HaeII	RGCGCY	1 cut(s)	479
HaeIII	GGCC	2 cut(s)	584, 631
HapII	CCGG	5 cut(s)	233, 249, 407, 451, 632
HhaI	GCGC	2 cut(s)	478, 652
Hin1I	GRCGYC	1 cut(s)	500
Hin6I	GCGC	2 cut(s)	476, 650
HinP1I	GCGC	2 cut(s)	476, 650
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	4 cut(s)	421, 428, 439, 758
HpaII	CCGG	5 cut(s)	233, 249, 407, 451, 632
HphI	GGTGA	2 cut(s)	69, 616
Hpy188III	TCNNGA	4 cut(s)	407, 425, 686, 774
Hpy99I	CGWCG	4 cut(s)	308, 377, 502, 505
HpyAV	CCTTC	3 cut(s)	140, 253, 552
HpyCH4IV	ACGT	2 cut(s)	9, 500
HpyCH4V	TGCA	1 cut(s)	288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	581
HpyF3I	CTNAG	2 cut(s)	393, 698
HpySE526I	ACGT	2 cut(s)	9, 500
Hsp92I	GRCGYC	1 cut(s)	500
HspAI	GCGC	2 cut(s)	476, 650
Kpn2I	TCCGGA	1 cut(s)	406
Ksp22I	TGATCA	1 cut(s)	660
Kzo9I	GATC	5 cut(s)	52, 358, 603, 660, 748
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	1 cut(s)	655
Lsp1109I	GCAGC	2 cut(s)	369, 559
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	9, 500
MaeIII	GTNAC	2 cut(s)	75, 622
MalI	GATC	5 cut(s)	54, 360, 605, 662, 750
MboI	GATC	5 cut(s)	52, 358, 603, 660, 748
MboII	GAAGA	4 cut(s)	17, 34, 62, 178
MflI	RGATCY	2 cut(s)	52, 748
MhlI	GDGCHC	1 cut(s)	344
MlsI	TGGCCA	1 cut(s)	584
MluCI	AATT	1 cut(s)	527
MluNI	TGGCCA	1 cut(s)	584
MmeI	TCCRAC	1 cut(s)	483
Mox20I	TGGCCA	1 cut(s)	584
MroI	TCCGGA	1 cut(s)	406
MroXI	GAANNNNTTC	2 cut(s)	9, 62
MscI	TGGCCA	1 cut(s)	584
Msp20I	TGGCCA	1 cut(s)	584
MspI	CCGG	5 cut(s)	233, 249, 407, 451, 632
MspR9I	CCNGG	5 cut(s)	47, 233, 452, 466, 628
MvaI	CCWGG	3 cut(s)	47, 466, 628
MvnI	CGCG	1 cut(s)	650
MwoI	GCNNNNNNNGC	1 cut(s)	581
NciI	CCSGG	2 cut(s)	233, 452
NdeII	GATC	5 cut(s)	52, 358, 603, 660, 748
NlaIV	GGNNCC	5 cut(s)	24, 220, 365, 643, 750
NmeAIII	GCCGAG	1 cut(s)	403
NmuCI	GTSAC	2 cut(s)	75, 622
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	2 cut(s)	354, 375
PdmI	GAANNNNTTC	2 cut(s)	9, 62
PfeI	GAWTC	4 cut(s)	421, 428, 439, 758
PfoI	TCCNGGA	2 cut(s)	45, 231
PkrI	GCNGC	9 cut(s)	30, 118, 199, 352, 355, 384, 574, 646, 649
Ple19I	CGATCG	1 cut(s)	361
Psp6I	CCWGG	3 cut(s)	45, 464, 626
PspGI	CCWGG	3 cut(s)	45, 464, 626
PspN4I	GGNNCC	5 cut(s)	24, 220, 365, 643, 750
PspPI	GGNCC	2 cut(s)	259, 334
PsuI	RGATCY	2 cut(s)	52, 748
PvuI	CGATCG	1 cut(s)	361
SapI	GCTCTTC	1 cut(s)	191
SatI	GCNGC	9 cut(s)	29, 117, 198, 351, 354, 383, 573, 645, 648
Sau3AI	GATC	5 cut(s)	52, 358, 603, 660, 748
Sau96I	GGNCC	2 cut(s)	259, 334
ScrFI	CCNGG	5 cut(s)	47, 233, 452, 466, 628
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	703
SinI	GGWCC	2 cut(s)	259, 334
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	1 cut(s)	527
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	5 cut(s)	45, 231, 450, 464, 626
TaiI	ACGT	2 cut(s)	12, 503
TaqI	TCGA	4 cut(s)	126, 303, 492, 515
TaqII	GACCGA	2 cut(s)	247, 322
TasI	AATT	1 cut(s)	527
TauI	GCSGC	7 cut(s)	31, 119, 200, 353, 356, 647, 650
TfiI	GAWTC	4 cut(s)	421, 428, 439, 758
TscAI	CASTG	1 cut(s)	344
TseFI	GTSAC	2 cut(s)	75, 622
TseI	GCWGC	2 cut(s)	382, 572
Tsp45I	GTSAC	2 cut(s)	75, 622
TspGWI	ACGGA	3 cut(s)	32, 63, 421
TspRI	CASTG	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	259, 334
XmnI	GAANNNNTTC	2 cut(s)	9, 62
XspI	CTAG	1 cut(s)	669
ZraI	GACGTC	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.