Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000063.1

Orthogroup ID

OG0021622

Physical Location & Seq

Genomic Coordinates Reverse (-)

174733 .. 175065

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

atgctcaagctcctccttcacaacttccaccgtctcagcctccccaattcccccaaattccgatgcgtcttgcatcagattgcccccaacttggccgtctccttctccctcagttccgtcttcacctctgccaacctcatcgccgccgccgccgccgccgccgcctccggctccggctttctccacggcaccgtcacctccaccatcactcaagtcgctgtcactgccgtcaccatcgcttccactaaagttgatttcttgtggcccaaactcgaaagacagctagccccggcgaagcctcgaggtcgtagacgacgactccgacgactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

110

Amino Acids

11.93

Weight (kDa)

12.0

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021622)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000063.1_g000034 Rmu_sc0000101.1_g000011
rosa_samantha	Rh7BG456100 Rh7BG456200 Rh7BG456300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	188
AccI	GTMKAC	1 cut(s)	310
AciI	CCGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	1 cut(s)	56
AfiI	CCNNNNNNNGG	1 cut(s)	91
AluBI	AGCT	2 cut(s)	10, 283
AluI	AGCT	2 cut(s)	10, 283
Alw26I	GTCTC	2 cut(s)	38, 103
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	2 cut(s)	93, 263
ApoI	RAATTY	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	264
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	3 cut(s)	115, 187, 223
AsuNHI	GCTAGC	1 cut(s)	283
AvaI	CYCGRG	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	188
BbsI	GAAGAC	1 cut(s)	112
BccI	CCATC	2 cut(s)	212, 242
BceAI	ACGGC	3 cut(s)	80, 202, 212
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	2 cut(s)	38, 103
BfaI	CTAG	1 cut(s)	284
BisI	GCNGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
BlsI	GCNGC	7 cut(s)	145, 148, 151, 154, 157, 160, 163
Bme1390I	CCNGG	1 cut(s)	290
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	2 cut(s)	172, 190
BmrFI	CCNGG	1 cut(s)	290
BmsI	GCATC	2 cut(s)	53, 82
BmtI	GCTAGC	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	112
BpuEI	CTTGAG	1 cut(s)	195
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	2 cut(s)	184, 288
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	184, 288
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	49, 124
BshFI	GGCC	2 cut(s)	95, 265
BshNI	GGYRCC	1 cut(s)	188
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	168, 174, 290
BslI	CCNNNNNNNGG	1 cut(s)	91
BsmAI	GTCTC	2 cut(s)	38, 103
BsmBI	CGTCTC	2 cut(s)	38, 103
BsnI	GGCC	2 cut(s)	95, 265
BsoBI	CYCGRG	1 cut(s)	300
BspACI	CCGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
BspANI	GGCC	2 cut(s)	95, 265
BspCNI	CTCAG	2 cut(s)	48, 123
BspLI	GGNNCC	2 cut(s)	172, 190
BspOI	GCTAGC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	184, 288
Bst4CI	ACNGT	2 cut(s)	32, 193
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	2 cut(s)	35, 110
BstDSI	CCRYGG	1 cut(s)	184
BstMAI	GTCTC	2 cut(s)	38, 103
BstMWI	GCNNNNNNNGC	6 cut(s)	149, 152, 155, 158, 161, 224
BstSCI	CCNGG	1 cut(s)	288
BstV2I	GAAGAC	1 cut(s)	112
BsuRI	GGCC	2 cut(s)	95, 265
BtgI	CCRYGG	1 cut(s)	184
BtgZI	GCGATG	2 cut(s)	124, 220
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	55
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviJI	RGCY	9 cut(s)	10, 39, 95, 171, 177, 265, 283, 287, 298
CviKI_1	RGCY	9 cut(s)	10, 39, 95, 171, 177, 265, 283, 287, 298
DdeI	CTNAG	2 cut(s)	35, 110
EaeI	YGGCCR	1 cut(s)	93
Eco88I	CYCGRG	1 cut(s)	300
Esp3I	CGTCTC	2 cut(s)	38, 103
FblI	GTMKAC	1 cut(s)	310
Fnu4HI	GCNGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
Fsp4HI	GCNGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
FspBI	CTAG	1 cut(s)	284
GluI	GCNGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
HaeIII	GGCC	2 cut(s)	95, 265
HapII	CCGG	3 cut(s)	168, 174, 290
HgaI	GACGC	1 cut(s)	55
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	3 cut(s)	168, 174, 290
HphI	GGTGA	3 cut(s)	115, 187, 223
Hpy166II	GTNNAC	1 cut(s)	311
Hpy188I	TCNGA	3 cut(s)	62, 78, 323
Hpy8I	GTNNAC	1 cut(s)	311
Hpy99I	CGWCG	2 cut(s)	318, 327
HpyAV	CCTTC	2 cut(s)	26, 112
HpyCH4III	ACNGT	2 cut(s)	32, 193
HpyCH4V	TGCA	1 cut(s)	73
HpyF10VI	GCNNNNNNNGC	6 cut(s)	149, 152, 155, 158, 161, 224
HpyF3I	CTNAG	2 cut(s)	35, 110
LmnI	GCTCC	2 cut(s)	15, 176
LpnPI	CCDG	3 cut(s)	181, 187, 303
LweI	GCATC	2 cut(s)	53, 82
MaeI	CTAG	1 cut(s)	284
MaeIII	GTNAC	3 cut(s)	193, 220, 229
MboII	GAAGA	1 cut(s)	112
MluCI	AATT	2 cut(s)	46, 56
MlyI	GAGTC	1 cut(s)	312
MnlI	CCTC	9 cut(s)	23, 50, 119, 136, 146, 175, 208, 296, 309
MspI	CCGG	3 cut(s)	168, 174, 290
MspR9I	CCNGG	1 cut(s)	290
MwoI	GCNNNNNNNGC	6 cut(s)	149, 152, 155, 158, 161, 224
NciI	CCSGG	1 cut(s)	290
NheI	GCTAGC	1 cut(s)	283
NlaIV	GGNNCC	2 cut(s)	172, 190
NmuCI	GTSAC	3 cut(s)	193, 220, 229
PaeR7I	CTCGAG	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	3 cut(s)	313, 319, 322
PkrI	GCNGC	7 cut(s)	145, 148, 151, 154, 157, 160, 163
PleI	GAGTC	1 cut(s)	312
PpsI	GAGTC	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	172, 190
PspPI	GGNCC	1 cut(s)	264
PspXI	VCTCGAGB	1 cut(s)	300
SatI	GCNGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	312
ScrFI	CCNGG	1 cut(s)	290
SetI	ASST	6 cut(s)	12, 128, 138, 200, 285, 307
SfaNI	GCATC	2 cut(s)	53, 82
Sfr274I	CTCGAG	1 cut(s)	300
SlaI	CTCGAG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	5, 210, 300
SmoI	CTYRAG	3 cut(s)	5, 210, 300
Sse9I	AATT	2 cut(s)	46, 56
SsiI	CCGC	7 cut(s)	144, 147, 150, 153, 156, 159, 162
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	32, 193
TaqI	TCGA	2 cut(s)	273, 301
TasI	AATT	2 cut(s)	46, 56
TauI	GCSGC	7 cut(s)	146, 149, 152, 155, 158, 161, 164
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	3 cut(s)	193, 220, 229
Tsp45I	GTSAC	3 cut(s)	193, 220, 229
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	56
XhoI	CTCGAG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	310
XspI	CTAG	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.