Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021622

Physical Location & Seq

Genomic Coordinates Reverse (-)

53999760 .. 54007520

Gene Structure 7761 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG456300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGCGTCAGATCTCCCCCAACTTGGCCGTCTCCTTCTCCCTCATCTCCGGTTCTCACCACGGCGCCGTCACCTCCACCATCACTCAAGTCGCCGTCACCATCGCCTCCAGTAAAGTTGATTTCTTGTGGCCCAAACTCGAAAGACAGCCAGTTTGGGCTGTGATCCAAAGTGTTGTATTCTTAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

62

Amino Acids

6.76

Weight (kDa)

9.98

Isoelectric Point (pI)

25.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021622)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000063.1_g000034 Rmu_sc0000101.1_g000011
rosa_samantha	Rh7BG456100 Rh7BG456200 Rh7BG456300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	62
AclWI	GGATC	1 cut(s)	157
AcoI	YGGCCR	1 cut(s)	24
AcyI	GRCGYC	1 cut(s)	63
AfiI	CCNNNNNNNGG	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	157
AoxI	GGCC	2 cut(s)	24, 128
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	129
AsuHPI	GGTGA	3 cut(s)	47, 61, 88
BanI	GGYRCC	1 cut(s)	62
BccI	CCATC	2 cut(s)	86, 107
BceAI	ACGGC	4 cut(s)	11, 50, 76, 77
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	1 cut(s)	187
BfoI	RGCGCY	1 cut(s)	66
BglII	AGATCT	1 cut(s)	9
BmgT120I	GGNCC	1 cut(s)	129
BmiI	GGNNCC	1 cut(s)	64
BpmI	CTGGAG	1 cut(s)	91
BpuEI	CTTGAG	1 cut(s)	69
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	47
Bsc4I	CCNNNNNNNGG	1 cut(s)	22
Bse1I	ACTGG	2 cut(s)	108, 149
BseDI	CCNNGG	1 cut(s)	58
BseLI	CCNNNNNNNGG	1 cut(s)	22
BseNI	ACTGG	2 cut(s)	108, 149
BshFI	GGCC	2 cut(s)	26, 130
BshNI	GGYRCC	1 cut(s)	62
BsiSI	CCGG	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	26, 130
Bsp143I	GATC	2 cut(s)	9, 162
BspANI	GGCC	2 cut(s)	26, 130
BspLI	GGNNCC	1 cut(s)	64
BspPI	GGATC	1 cut(s)	157
BspT107I	GGYRCC	1 cut(s)	62
BsrI	ACTGG	2 cut(s)	108, 149
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	2 cut(s)	9, 162
BssNI	GRCGYC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	63
BstDSI	CCRYGG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	66
BstHHI	GCGC	1 cut(s)	65
BstKTI	GATC	2 cut(s)	12, 165
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	2 cut(s)	9, 162
BstX2I	RGATCY	1 cut(s)	9
BstYI	RGATCY	1 cut(s)	9
BsuRI	GGCC	2 cut(s)	26, 130
BtgI	CCRYGG	1 cut(s)	58
BtgZI	GCGATG	1 cut(s)	85
CfoI	GCGC	1 cut(s)	65
Cfr13I	GGNCC	1 cut(s)	129
CviJI	RGCY	4 cut(s)	26, 130, 148, 158
CviKI_1	RGCY	4 cut(s)	26, 130, 148, 158
DinI	GGCGCC	1 cut(s)	64
DpnI	GATC	2 cut(s)	11, 164
DpnII	GATC	2 cut(s)	9, 162
EaeI	YGGCCR	1 cut(s)	24
EgeI	GGCGCC	1 cut(s)	64
EheI	GGCGCC	1 cut(s)	64
Esp3I	CGTCTC	1 cut(s)	34
FspBI	CTAG	1 cut(s)	187
GlaI	GCGC	1 cut(s)	64
GsuI	CTGGAG	1 cut(s)	91
HaeII	RGCGCY	1 cut(s)	66
HaeIII	GGCC	2 cut(s)	26, 130
HapII	CCGG	1 cut(s)	48
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HpaII	CCGG	1 cut(s)	48
HphI	GGTGA	3 cut(s)	47, 61, 88
Hpy188I	TCNGA	1 cut(s)	9
HpyAV	CCTTC	1 cut(s)	43
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	1 cut(s)	63
KasI	GGCGCC	1 cut(s)	62
Kzo9I	GATC	2 cut(s)	9, 162
LpnPI	CCDG	3 cut(s)	61, 121, 162
MaeI	CTAG	1 cut(s)	187
MaeIII	GTNAC	2 cut(s)	67, 94
MalI	GATC	2 cut(s)	11, 164
MboI	GATC	2 cut(s)	9, 162
MflI	RGATCY	1 cut(s)	9
Mly113I	GGCGCC	1 cut(s)	63
MnlI	CCTC	3 cut(s)	50, 82, 115
MseI	TTAA	1 cut(s)	182
MspI	CCGG	1 cut(s)	48
NarI	GGCGCC	1 cut(s)	63
NdeII	GATC	2 cut(s)	9, 162
NlaIV	GGNNCC	1 cut(s)	64
NmuCI	GTSAC	2 cut(s)	67, 94
PluTI	GGCGCC	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	64
PspPI	GGNCC	1 cut(s)	129
PsuI	RGATCY	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	182
Sau3AI	GATC	2 cut(s)	9, 162
Sau96I	GGNCC	1 cut(s)	129
SetI	ASST	1 cut(s)	74
SfoI	GGCGCC	1 cut(s)	64
SgeI	CNNG	8 cut(s)	34, 60, 71, 98, 120, 136, 149, 161
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SspDI	GGCGCC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	187
TaqI	TCGA	1 cut(s)	138
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TseFI	GTSAC	2 cut(s)	67, 94
Tsp45I	GTSAC	2 cut(s)	67, 94
XspI	CTAG	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.