Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0021622

Physical Location & Seq

Genomic Coordinates Reverse (-)

53848423 .. 53848955

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG456100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGACCTGGAAAGCACAGCAATGCTCAAGCTCCTCCTCCACAACTTCCACCGTCTCAGGCTCCCCACTTCCCCCAAATTCCGATGACTTGCATCAGATCTCCCCCAACTTGGCCGTCTCCTTCTCCCTCATCTCCGGCTCTCTCCACGGCGCCGTCACCTCCACCATCACTCAAGTCGCTGTCACCGCCGTCATCATCGCCTCCACTAAAGTTGATTTCTTGTGGCCCAAACTCGAAAGACAGCCAGTTTGGGCTGTGATCCAAAGGTTTCGACCCACTCTGAAACCTCTAAACTTACCCGCCGGTGACTTTAGAACTTTCACCCTTCACCTTCTTCCACCATCTCAGACCTCCCTTCCTTCTCTTCGTCTCTGCAACACCAAAACGCTGCGTTTCACAAACAATGCTCCTCCAATAGCTCTCCTCGCCGGAACAGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008728 GO:0008893 GO:0009116 GO:0009117 GO:0009119 GO:0009150 GO:0009259 GO:0009605 GO:0009987 GO:0009991 GO:0015969 GO:0016020 GO:0016740 GO:0016772 GO:0016778 GO:0016787 GO:0016788 GO:0016794 GO:0019637 GO:0019693 GO:0030312 GO:0031667 GO:0033865 GO:0033875 GO:0034032 GO:0034035 GO:0034641 GO:0042278 GO:0042578 GO:0042594 GO:0044237 GO:0044238 GO:0044281 GO:0044464 GO:0046128 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0071944 GO:0072521 GO:1901068 GO:1901135 GO:1901360 GO:1901564 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00230 map00230

Pfam Domains

Protein Families

HD_4 RelA_SpoT TGS

Protein Analysis

146

Amino Acids

15.72

Weight (kDa)

9.89

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021622)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000063.1_g000034 Rmu_sc0000101.1_g000011
rosa_samantha	Rh7BG456100 Rh7BG456200 Rh7BG456300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	149
AciI	CCGC	2 cut(s)	186, 300
AclWI	GGATC	1 cut(s)	253
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	76
AcyI	GRCGYC	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	5
AluBI	AGCT	2 cut(s)	30, 419
AluI	AGCT	2 cut(s)	30, 419
Alw26I	GTCTC	3 cut(s)	58, 121, 374
AlwI	GGATC	1 cut(s)	253
AoxI	GGCC	2 cut(s)	111, 224
ApeKI	GCWGC	1 cut(s)	388
ApoI	RAATTY	1 cut(s)	76
ArsI	GACNNNNNNTTYG	2 cut(s)	231, 263
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	225
AsuHPI	GGTGA	5 cut(s)	148, 175, 313, 317, 320
BanI	GGYRCC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	375
BccI	CCATC	2 cut(s)	173, 349
BceAI	ACGGC	4 cut(s)	98, 137, 163, 173
BciT130I	CCWGG	1 cut(s)	7
BcoDI	GTCTC	3 cut(s)	58, 121, 374
BfoI	RGCGCY	1 cut(s)	153
BglII	AGATCT	1 cut(s)	96
BisI	GCNGC	1 cut(s)	389
BlsI	GCNGC	1 cut(s)	390
Bme1390I	CCNGG	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	61, 151
BmrFI	CCNGG	1 cut(s)	7
BmsI	GCATC	1 cut(s)	100
BpuEI	CTTGAG	2 cut(s)	10, 156
BsaHI	GRCGYC	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	1 cut(s)	245
Bse3DI	GCAATG	1 cut(s)	26
BseBI	CCWGG	1 cut(s)	7
BseDI	CCNNGG	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	109
BseMI	GCAATG	1 cut(s)	26
BseMII	CTCAG	2 cut(s)	69, 359
BseNI	ACTGG	1 cut(s)	245
BseRI	GAGGAG	4 cut(s)	22, 25, 399, 413
BseXI	GCAGC	1 cut(s)	375
BshFI	GGCC	2 cut(s)	113, 226
BshNI	GGYRCC	1 cut(s)	149
BsiSI	CCGG	3 cut(s)	135, 303, 429
BslI	CCNNNNNNNGG	1 cut(s)	109
BsmAI	GTCTC	3 cut(s)	58, 121, 374
BsmBI	CGTCTC	3 cut(s)	58, 121, 374
BsnI	GGCC	2 cut(s)	113, 226
Bsp143I	GATC	2 cut(s)	96, 258
BspACI	CCGC	2 cut(s)	186, 300
BspANI	GGCC	2 cut(s)	113, 226
BspCNI	CTCAG	2 cut(s)	68, 358
BspLI	GGNNCC	2 cut(s)	61, 151
BspPI	GGATC	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	149
BsrDI	GCAATG	1 cut(s)	26
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	1 cut(s)	145
BssMI	GATC	2 cut(s)	96, 258
BssNI	GRCGYC	1 cut(s)	150
Bst2UI	CCWGG	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	150
BstDEI	CTNAG	2 cut(s)	55, 345
BstDSI	CCRYGG	1 cut(s)	145
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	99, 261
BstMAI	GTCTC	3 cut(s)	58, 121, 374
BstMBI	GATC	2 cut(s)	96, 258
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 425
BstNI	CCWGG	1 cut(s)	7
BstSCI	CCNGG	1 cut(s)	5
BstV1I	GCAGC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	2 cut(s)	113, 226
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	181
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	225
CspCI	CAANNNNNGTGG	2 cut(s)	193, 228
CviJI	RGCY	8 cut(s)	30, 60, 113, 138, 226, 244, 254, 419
CviKI_1	RGCY	8 cut(s)	30, 60, 113, 138, 226, 244, 254, 419
DdeI	CTNAG	2 cut(s)	55, 345
DinI	GGCGCC	1 cut(s)	151
DpnI	GATC	2 cut(s)	98, 260
DpnII	GATC	2 cut(s)	96, 258
EaeI	YGGCCR	1 cut(s)	111
Eam1104I	CTCTTC	1 cut(s)	369
EarI	CTCTTC	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	5
EgeI	GGCGCC	1 cut(s)	151
EheI	GGCGCC	1 cut(s)	151
Esp3I	CGTCTC	3 cut(s)	58, 121, 374
FauI	CCCGC	1 cut(s)	307
Fnu4HI	GCNGC	1 cut(s)	389
Fsp4HI	GCNGC	1 cut(s)	389
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	389
HaeII	RGCGCY	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	113, 226
HapII	CCGG	3 cut(s)	135, 303, 429
HhaI	GCGC	1 cut(s)	152
Hin1I	GRCGYC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HpaII	CCGG	3 cut(s)	135, 303, 429
HphI	GGTGA	5 cut(s)	148, 175, 313, 317, 320
Hpy188I	TCNGA	4 cut(s)	82, 96, 282, 348
HpyAV	CCTTC	5 cut(s)	130, 335, 341, 365, 369
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	91, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 425
HpyF3I	CTNAG	2 cut(s)	55, 345
Hsp92I	GRCGYC	1 cut(s)	150
HspAI	GCGC	1 cut(s)	150
KasI	GGCGCC	1 cut(s)	149
Kzo9I	GATC	2 cut(s)	96, 258
LmnI	GCTCC	3 cut(s)	35, 65, 412
LpnPI	CCDG	5 cut(s)	19, 42, 148, 258, 316
Lsp1109I	GCAGC	1 cut(s)	375
LweI	GCATC	1 cut(s)	100
MaeIII	GTNAC	3 cut(s)	154, 181, 305
MalI	GATC	2 cut(s)	98, 260
MboI	GATC	2 cut(s)	96, 258
MboII	GAAGA	2 cut(s)	326, 356
MflI	RGATCY	1 cut(s)	96
MluCI	AATT	1 cut(s)	76
Mly113I	GGCGCC	1 cut(s)	150
MnlI	CCTC	9 cut(s)	43, 46, 137, 169, 211, 297, 361, 420, 434
MslI	CAYNNNNRTG	1 cut(s)	19
MspI	CCGG	3 cut(s)	135, 303, 429
MspR9I	CCNGG	1 cut(s)	7
MvaI	CCWGG	1 cut(s)	7
MwoI	GCNNNNNNNGC	2 cut(s)	185, 425
NarI	GGCGCC	1 cut(s)	150
NdeII	GATC	2 cut(s)	96, 258
NlaIV	GGNNCC	2 cut(s)	61, 151
NmuCI	GTSAC	3 cut(s)	154, 181, 305
PkrI	GCNGC	1 cut(s)	390
PluTI	GGCGCC	1 cut(s)	153
Psp6I	CCWGG	1 cut(s)	5
PspGI	CCWGG	1 cut(s)	5
PspN4I	GGNNCC	2 cut(s)	61, 151
PspPI	GGNCC	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	96
RseI	CAYNNNNRTG	1 cut(s)	19
SatI	GCNGC	1 cut(s)	389
Sau3AI	GATC	2 cut(s)	96, 258
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	7
SetI	ASST	8 cut(s)	8, 32, 161, 269, 289, 333, 353, 421
SfaNI	GCATC	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	151
SgrAI	CRCCGGYG	1 cut(s)	302
SmiMI	CAYNNNNRTG	1 cut(s)	19
SmlI	CTYRAG	2 cut(s)	25, 171
SmoI	CTYRAG	2 cut(s)	25, 171
Sse9I	AATT	1 cut(s)	76
SsiI	CCGC	2 cut(s)	186, 300
SspDI	GGCGCC	1 cut(s)	149
StyD4I	CCNGG	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	234, 271
TasI	AATT	1 cut(s)	76
TseFI	GTSAC	3 cut(s)	154, 181, 305
TseI	GCWGC	1 cut(s)	388
Tsp45I	GTSAC	3 cut(s)	154, 181, 305
XapI	RAATTY	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.