Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000082.1

Orthogroup ID

OG0021623

Physical Location & Seq

Genomic Coordinates Forward (+)

172715 .. 173200

Gene Structure 486 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

atggaaccacaaacccaccaaccaaccgaggatggagggagcaacaaagcagccgagagtagtgccagcatgctttgcaggaggagcaataccaggtggactcccactccagatcagataagaatcctcaatgagcttttctatagcaaggggattaggtccccaaccgtagagcaggttcagcggatctgtttccagttgagacggtacagacagatcgagaccaagaatgtcttttattggttccagaaccaaaaggctcgggataaacggaagaagaagatcacttctgatgttcatgtgcccatgcaaagatcagggcttgttggtggatccattaatctaaattttgggtcaactagctctactgttatgaaacagcgaggagaagatcaccaggcgattgaaactcttccactgttccccatgcacagtgaagacatcttgggcaacatgaagactacttccgagggaggtggcggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

161

Amino Acids

18.27

Weight (kDa)

9.69

Isoelectric Point (pI)

65.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 91	1.8e-11	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021623)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000082.1_g000051 Rmu_sc0002809.1_g000017
rosa_rugosa	Rorug05G0498900 Rorug06G0000500 Rorug06G0000800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	166
AciI	CCGC	2 cut(s)	184, 480
AclWI	GGATC	3 cut(s)	194, 327, 340
AcsI	RAATTY	1 cut(s)	346
AfaI	GTAC	1 cut(s)	209
AgsI	TTSAA	1 cut(s)	407
AjnI	CCWGG	2 cut(s)	92, 396
AluBI	AGCT	2 cut(s)	136, 363
AluI	AGCT	2 cut(s)	136, 363
Alw26I	GTCTC	2 cut(s)	196, 215
AlwI	GGATC	3 cut(s)	194, 327, 340
Ama87I	CYCGRG	1 cut(s)	261
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	1 cut(s)	346
AseI	ATTAAT	1 cut(s)	339
Asp700I	GAANNNNTTC	1 cut(s)	411
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	306
BamHI	GGATCC	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	444, 464
BbvI	GCAGC	1 cut(s)	62
BccI	CCATC	1 cut(s)	26
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	2 cut(s)	94, 398
BcoDI	GTCTC	2 cut(s)	196, 215
BfaI	CTAG	1 cut(s)	360
BfmI	CTRYAG	1 cut(s)	142
BfuAI	ACCTGC	1 cut(s)	166
BisI	GCNGC	2 cut(s)	51, 481
BlsI	GCNGC	2 cut(s)	52, 482
Bme1390I	CCNGG	2 cut(s)	94, 398
Bme18I	GGWCC	1 cut(s)	159
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	4 cut(s)	6, 161, 245, 334
BmrFI	CCNGG	2 cut(s)	94, 398
BpiI	GAAGAC	2 cut(s)	444, 464
BpmI	CTGGAG	1 cut(s)	93
BsaBI	GATNNNNATC	1 cut(s)	122
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	2 cut(s)	27, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	91, 121
Bse1I	ACTGG	1 cut(s)	196
Bse8I	GATNNNNATC	1 cut(s)	122
BseBI	CCWGG	2 cut(s)	94, 398
BseDI	CCNNGG	2 cut(s)	27, 468
BseGI	GGATG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	122
BseNI	ACTGG	1 cut(s)	196
BseRI	GAGGAG	2 cut(s)	97, 399
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	145
BsmAI	GTCTC	2 cut(s)	196, 215
BsmBI	CGTCTC	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	145
Bso31I	GGTCTC	1 cut(s)	215
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
BspACI	CCGC	2 cut(s)	184, 480
BspLI	GGNNCC	4 cut(s)	6, 161, 245, 334
BspMI	ACCTGC	1 cut(s)	166
BspPI	GGATC	3 cut(s)	194, 327, 340
BspTNI	GGTCTC	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	27, 468
BssMI	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
Bst2UI	CCWGG	2 cut(s)	94, 398
Bst4CI	ACNGT	5 cut(s)	169, 207, 370, 420, 434
Bst6I	CTCTTC	1 cut(s)	417
BstAPI	GCANNNNNTGC	1 cut(s)	75
BstC8I	GCNNGC	2 cut(s)	67, 71
BstF5I	GGATG	1 cut(s)	37
BstKTI	GATC	7 cut(s)	115, 189, 219, 285, 317, 335, 394
BstMAI	GTCTC	2 cut(s)	196, 215
BstMBI	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 84, 181
BstNI	CCWGG	2 cut(s)	94, 398
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	2 cut(s)	92, 396
BstSFI	CTRYAG	1 cut(s)	142
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	1 cut(s)	62
BstV2I	GAAGAC	2 cut(s)	444, 464
BstX2I	RGATCY	2 cut(s)	186, 332
BstYI	RGATCY	2 cut(s)	186, 332
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	2 cut(s)	416, 439
BveI	ACCTGC	1 cut(s)	166
Cac8I	GCNNGC	2 cut(s)	67, 71
Cfr13I	GGNCC	1 cut(s)	159
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	1 cut(s)	208
CviAII	CATG	5 cut(s)	70, 299, 307, 427, 454
CviJI	RGCY	6 cut(s)	53, 136, 260, 322, 363, 483
CviKI_1	RGCY	6 cut(s)	53, 136, 260, 322, 363, 483
CviQI	GTAC	1 cut(s)	208
DpnI	GATC	7 cut(s)	114, 188, 218, 284, 316, 334, 393
DpnII	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Eco31I	GGTCTC	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	159
Eco88I	CYCGRG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	159
EcoRII	CCWGG	2 cut(s)	92, 396
Esp3I	CGTCTC	1 cut(s)	196
FaeI	CATG	5 cut(s)	73, 302, 310, 430, 457
FaiI	YATR	7 cut(s)	71, 144, 300, 308, 374, 428, 455
FalI	AAGNNNNNCTT	2 cut(s)	218, 250
FaqI	GGGAC	1 cut(s)	145
FatI	CATG	5 cut(s)	69, 298, 306, 426, 453
Fnu4HI	GCNGC	2 cut(s)	51, 481
FokI	GGATG	1 cut(s)	44
Fsp4HI	GCNGC	2 cut(s)	51, 481
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	2 cut(s)	51, 481
GsuI	CTGGAG	1 cut(s)	93
Hin1II	CATG	5 cut(s)	73, 302, 310, 430, 457
HincII	GTYRAC	1 cut(s)	357
HindII	GTYRAC	1 cut(s)	357
HinfI	GANTC	2 cut(s)	100, 123
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	99, 357
Hpy188I	TCNGA	3 cut(s)	117, 292, 469
Hpy188III	TCNNGA	4 cut(s)	110, 220, 247, 263
Hpy8I	GTNNAC	2 cut(s)	99, 357
HpyCH4III	ACNGT	5 cut(s)	169, 207, 370, 420, 434
HpyCH4V	TGCA	3 cut(s)	78, 310, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 84, 181
Hsp92II	CATG	5 cut(s)	73, 302, 310, 430, 457
Kzo9I	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
LmnI	GCTCC	2 cut(s)	39, 84
Lsp1109I	GCAGC	1 cut(s)	62
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	360
MalI	GATC	7 cut(s)	114, 188, 218, 284, 316, 334, 393
MboI	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
MboII	GAAGA	7 cut(s)	286, 289, 292, 401, 404, 449, 469
MflI	RGATCY	2 cut(s)	186, 332
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	1 cut(s)	346
MlyI	GAGTC	1 cut(s)	94
MnlI	CCTC	7 cut(s)	22, 29, 75, 137, 377, 463, 467
MroXI	GAANNNNTTC	1 cut(s)	411
MseI	TTAA	1 cut(s)	339
MspA1I	CMGCKG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	94, 398
MvaI	CCWGG	2 cut(s)	94, 398
MwoI	GCNNNNNNNGC	3 cut(s)	75, 84, 181
NdeII	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
NlaIII	CATG	5 cut(s)	73, 302, 310, 430, 457
NlaIV	GGNNCC	4 cut(s)	6, 161, 245, 334
NmeAIII	GCCGAG	1 cut(s)	79
NspI	RCATGY	1 cut(s)	73
PaeI	GCATGC	1 cut(s)	73
PdmI	GAANNNNTTC	1 cut(s)	411
PfeI	GAWTC	1 cut(s)	123
PkrI	GCNGC	2 cut(s)	52, 482
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
PpuMI	RGGWCCY	1 cut(s)	159
PshBI	ATTAAT	1 cut(s)	339
Psp5II	RGGWCCY	1 cut(s)	159
Psp6I	CCWGG	2 cut(s)	92, 396
PspGI	CCWGG	2 cut(s)	92, 396
PspN4I	GGNNCC	4 cut(s)	6, 161, 245, 334
PspPI	GGNCC	1 cut(s)	159
PspPPI	RGGWCCY	1 cut(s)	159
PsrI	GAACNNNNNNTAC	2 cut(s)	162, 194
PsuI	RGATCY	2 cut(s)	186, 332
RsaI	GTAC	1 cut(s)	209
RsaNI	GTAC	1 cut(s)	208
SaqAI	TTAA	1 cut(s)	339
SatI	GCNGC	2 cut(s)	51, 481
Sau3AI	GATC	7 cut(s)	112, 186, 216, 282, 314, 332, 391
Sau96I	GGNCC	1 cut(s)	159
SchI	GAGTC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	94, 398
SduI	GDGCHC	1 cut(s)	306
SetI	ASST	6 cut(s)	98, 138, 161, 180, 365, 478
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	159
SphI	GCATGC	1 cut(s)	73
Sse9I	AATT	1 cut(s)	346
SsiI	CCGC	2 cut(s)	184, 480
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	92, 396
TaaI	ACNGT	5 cut(s)	169, 207, 370, 420, 434
TaqI	TCGA	1 cut(s)	219
TasI	AATT	1 cut(s)	346
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	123
Tru1I	TTAA	1 cut(s)	339
Tru9I	TTAA	1 cut(s)	339
TscAI	CASTG	2 cut(s)	423, 439
TseI	GCWGC	1 cut(s)	50
TspDTI	ATGAA	3 cut(s)	287, 389, 470
TspGWI	ACGGA	1 cut(s)	286
TspRI	CASTG	2 cut(s)	423, 439
VpaK11BI	GGWCC	1 cut(s)	159
VspI	ATTAAT	1 cut(s)	339
XapI	RAATTY	1 cut(s)	346
XceI	RCATGY	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	411
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.