Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

68075560 .. 68078902

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0498900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCTTTCCGGCGACCTTCTTTCACCTCGGCTCTCTTCCTCTGCGTCCTGCTACTGTCCACCCATTCTTCTATTGCGCGCAAAACCCACAAAATCCGAGGACCCATCAAAACCGTCGTCGTTTTGGTCATGGAAAACCGCTCCTTTGACCATATCCTCGGCTGGCTCAAGTCGACCCGACCCGAAATCGACGGTTTAACCGGCAAAGAATCGAACCGGCTCTCCGTTTCCAACCCGAATTCCCCGAAAGTCCACGTCTCCAGCGACGCCGGCTTCATCGACTCCGATCCCGGCCACTCGTTCCAGGCGATCCGGGAACAGATATTCGGATCCCACCGGAGCTCCGGCAACCCGGCCCTGATGAACGGGTTCGCCCAGCAGGCCGAGTCCATGTCCCCGGGCATGGCCGCCACCGTCATGAGCGGCTTCAAACCGGAGGTCCTCCCCGCCTACACCGAGTTAGCCAACGAGTTCGCCGTCTTCGACCGGTGGTTCGCTTCCGTCCCGGCGTCGACCCAGCCGAACCGGTTCTACGTCCACTCCGCCACGTCACACGGCGCCACCAGCAACGTCCGGAAGGACCTGATCCACGGCTTCCCCCAGCGAACCATCTTCGACTCCCTGGACGAAAATGACCTCAGCTTCGGGATTTATTACCAGAACATCCCCGCCTCTCTGTTCTTCAAGAGCCTCAGGAAGCTGAAGCACGTGACCAAGTTCCACAGCTACGCCTTGAAGTTCAAGCTCCACGCCAAGCTCGGGAAGCTGCCCAACTACGCCGTCATCGAGCAGCGGTACTTCGACGTTAAGGAGATGCCGGCCAATGACGACCACCCGTCGCATGACGTGGCGAGAGGGCAGAGGTTCGTGAAGGAGGTGTACGAGACTCTGAGGAAGAGCCCGCAGTGGAAAGAAATGGCATTGCTGATTACTTATGATGAGCACGGTGGGTTTTACGACCATGTGCCTACGCCTATTTCGGGTGTTCCTAGTCCTGATGGGATTACCGGGCCTGACCCGTTTTACTTCCGGTTTGACCGGTTGGGGGTTCGGGTGCCTACCATTCTTGTCTCCCCCTGGATCGAAAAGGGTACCGTGATCCATGAGCCAACAGGGCCAACACCACATTCCCAGTTTGAGCATTCTTCTATTCCCGCAACTGTAAAGAAGCTTTTCAATTTAAAATCCAACTTCCTGACAAAGAGAGATGCATGGGCTGGTACTTTTGAGAATTACTTTTACCTCCGTGACACTCCTCGTGATGATTGTCCAGAAACTCTTCCAGAGGTGACGAAATCACTGAGGCCAGGGGGACCTAAAGAAGACATAAGCCTCTCAGAGTTTCAGGTTGAACTGATCCAACTTGCATCCCAGCTCAACGGTGATCATGTACTCAACACTTACCCCTATATCGGCGAAAGAATGAACGTGCGCGAAGCCAACAGTTATGCAGAGGATGCTGTCAAGAGGTTCCTGGAAGCTGGAAGAGCTGCTCTTAAAGCCGGAGCCAACGAGTCTGCAATTGTTATGATGAGACCATCTCTCACTAGCCGAGTTAAAATGCAAGATCATGGTTCGTACCTAGAATCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

531

Amino Acids

59.64

Weight (kDa)

8.72

Isoelectric Point (pI)

45.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphoesterase	PF04185	36 - 395	1.4e-110	Phosphoesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1091
AccB1I	GGYRCC	3 cut(s)	557, 1054, 1091
AccBSI	CCGCTC	2 cut(s)	141, 423
AccI	GTMKAC	2 cut(s)	173, 512
AccII	CGCG	2 cut(s)	79, 1434
AccIII	TCCGGA	1 cut(s)	573
AciI	CCGC	9 cut(s)	139, 408, 423, 447, 543, 669, 793, 902, 1155
AclWI	GGATC	8 cut(s)	281, 304, 324, 337, 580, 1088, 1093, 1351
AcoI	YGGCCR	3 cut(s)	292, 405, 819
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	1 cut(s)	722
AcvI	CACGTG	1 cut(s)	709
AcyI	GRCGYC	3 cut(s)	267, 509, 558
AfaI	GTAC	6 cut(s)	797, 881, 1093, 1222, 1392, 1580
AfiI	CCNNNNNNNGG	5 cut(s)	403, 759, 980, 1045, 1412
AgeI	ACCGGT	3 cut(s)	486, 525, 1038
AgsI	TTSAA	6 cut(s)	430, 685, 736, 742, 1177, 1352
AhdI	GACNNNNNGTC	1 cut(s)	835
AjiI	CACGTC	3 cut(s)	256, 549, 847
AjnI	CCWGG	5 cut(s)	303, 621, 1076, 1306, 1473
AjuI	GAANNNNNNNTTGG	2 cut(s)	1111, 1143
AloI	GAACNNNNNNTCC	2 cut(s)	206, 238
Alw21I	GWGCWC	2 cut(s)	344, 945
Alw26I	GTCTC	4 cut(s)	262, 878, 1075, 1528
AlwI	GGATC	8 cut(s)	281, 304, 324, 337, 580, 1088, 1093, 1351
Ama87I	CYCGRG	2 cut(s)	397, 758
Aor13HI	TCCGGA	1 cut(s)	573
AoxI	GGCC	8 cut(s)	292, 354, 381, 405, 819, 1010, 1115, 1304
ApeKI	GCWGC	3 cut(s)	766, 790, 1490
ApoI	RAATTY	1 cut(s)	238
ArsI	GACNNNNNNTTYG	8 cut(s)	102, 134, 423, 455, 476, 508, 626, 658
AsiGI	ACCGGT	3 cut(s)	486, 525, 1038
Asp700I	GAANNNNTTC	4 cut(s)	368, 527, 1172, 1278
Asp718I	GGTACC	1 cut(s)	1091
AspLEI	GCGC	4 cut(s)	79, 81, 560, 1434
AspS9I	GGNCC	7 cut(s)	101, 355, 439, 580, 1010, 1115, 1313
AsuC2I	CCSGG	7 cut(s)	291, 314, 353, 398, 399, 506, 1009
AsuHPI	GGTGA	3 cut(s)	16, 1300, 1394
AvaI	CYCGRG	2 cut(s)	397, 758
AvaII	GGWCC	4 cut(s)	101, 439, 580, 1313
AxyI	CCTNAGG	1 cut(s)	692
BamHI	GGATCC	1 cut(s)	329
BanI	GGYRCC	3 cut(s)	557, 1054, 1091
BanII	GRGCYC	2 cut(s)	344, 902
BarI	GAAGNNNNNNTAC	2 cut(s)	863, 895
BauI	CACGAG	1 cut(s)	1257
BbrPI	CACGTG	1 cut(s)	709
BbsI	GAAGAC	2 cut(s)	472, 1329
Bbv12I	GWGCWC	2 cut(s)	344, 945
BbvCI	CCTCAGC	1 cut(s)	638
BbvI	GCAGC	3 cut(s)	753, 802, 1477
BccI	CCATC	4 cut(s)	113, 617, 992, 1546
BceAI	ACGGC	4 cut(s)	461, 571, 607, 764
BciT130I	CCWGG	5 cut(s)	305, 623, 1078, 1308, 1475
BclI	TGATCA	1 cut(s)	1384
BcnI	CCSGG	7 cut(s)	291, 314, 353, 398, 399, 506, 1009
BcoDI	GTCTC	4 cut(s)	262, 878, 1075, 1528
BfaI	CTAG	3 cut(s)	990, 1548, 1583
BfoI	RGCGCY	1 cut(s)	561
BglI	GCCNNNNNGGC	2 cut(s)	380, 1114
BisI	GCNGC	5 cut(s)	408, 424, 767, 791, 1491
BlsI	GCNGC	5 cut(s)	409, 425, 768, 792, 1492
Bme18I	GGWCC	4 cut(s)	101, 439, 580, 1313
BmeRI	GACNNNNNGTC	1 cut(s)	835
BmeT110I	CYCGRG	2 cut(s)	397, 758
BmgBI	CACGTC	3 cut(s)	256, 549, 847
BmgT120I	GGNCC	7 cut(s)	101, 355, 439, 580, 1010, 1115, 1313
BmiI	GGNNCC	8 cut(s)	103, 331, 559, 1056, 1093, 1314, 1472, 1507
BmrI	ACTGGG	1 cut(s)	1126
BmsI	GCATC	4 cut(s)	804, 1198, 1376, 1447
BmuI	ACTGGG	1 cut(s)	1126
BpiI	GAAGAC	2 cut(s)	472, 1329
BplI	GAGNNNNNCTC	2 cut(s)	1525, 1557
BpmI	CTGGAG	1 cut(s)	244
Bpu10I	CCTNAGC	1 cut(s)	638
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	7 cut(s)	291, 314, 353, 398, 399, 506, 1009
BsaAI	YACGTR	1 cut(s)	709
BsaHI	GRCGYC	3 cut(s)	267, 509, 558
BsaI	GGTCTC	1 cut(s)	1528
BsaJI	CCNNGG	9 cut(s)	27, 97, 157, 396, 397, 589, 621, 1076, 1307
BsaWI	WCCGGW	7 cut(s)	336, 433, 486, 525, 573, 1029, 1038
BsaXI	ACNNNNNCTCC	6 cut(s)	206, 236, 326, 356, 524, 554
Bsc4I	CCNNNNNNNGG	5 cut(s)	403, 759, 980, 1045, 1412
Bse118I	RCCGGY	7 cut(s)	200, 216, 269, 486, 525, 817, 1038
Bse1I	ACTGG	1 cut(s)	1132
Bse21I	CCTNAGG	1 cut(s)	692
Bse3DI	GCAATG	1 cut(s)	920
BseAI	TCCGGA	1 cut(s)	573
BseBI	CCWGG	5 cut(s)	305, 623, 1078, 1308, 1475
BseDI	CCNNGG	9 cut(s)	27, 97, 157, 396, 397, 589, 621, 1076, 1307
BseGI	GGATG	3 cut(s)	663, 1367, 1462
BseLI	CCNNNNNNNGG	5 cut(s)	403, 759, 980, 1045, 1412
BseMI	GCAATG	1 cut(s)	920
BseMII	CTCAG	5 cut(s)	652, 706, 881, 1292, 1350
BseNI	ACTGG	1 cut(s)	1132
BsePI	GCGCGC	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	1245
BseXI	GCAGC	3 cut(s)	753, 802, 1477
BseYI	CCCAGC	4 cut(s)	375, 516, 600, 1371
Bsh1236I	CGCG	2 cut(s)	79, 1434
Bsh1285I	CGRYCG	1 cut(s)	487
BshFI	GGCC	8 cut(s)	294, 356, 383, 407, 821, 1012, 1117, 1306
BshNI	GGYRCC	3 cut(s)	557, 1054, 1091
BshTI	ACCGGT	3 cut(s)	486, 525, 1038
BsiEI	CGRYCG	1 cut(s)	487
BsiHKAI	GWGCWC	2 cut(s)	344, 945
BsiHKCI	CYCGRG	2 cut(s)	397, 758
BslFI	GGGAC	3 cut(s)	379, 488, 1326
BslI	CCNNNNNNNGG	5 cut(s)	403, 759, 980, 1045, 1412
BsmAI	GTCTC	4 cut(s)	262, 878, 1075, 1528
BsmBI	CGTCTC	1 cut(s)	262
BsmFI	GGGAC	3 cut(s)	379, 488, 1326
BsmI	GAATGC	1 cut(s)	1141
BsnI	GGCC	8 cut(s)	294, 356, 383, 407, 821, 1012, 1117, 1306
Bso31I	GGTCTC	1 cut(s)	1528
BsoBI	CYCGRG	2 cut(s)	397, 758
Bsp1286I	GDGCHC	3 cut(s)	344, 902, 945
Bsp13I	TCCGGA	1 cut(s)	573
Bsp143I	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
BspACI	CCGC	9 cut(s)	139, 408, 423, 447, 543, 669, 793, 902, 1155
BspANI	GGCC	8 cut(s)	294, 356, 383, 407, 821, 1012, 1117, 1306
BspCNI	CTCAG	5 cut(s)	651, 705, 882, 1293, 1349
BspEI	TCCGGA	1 cut(s)	573
BspFNI	CGCG	2 cut(s)	79, 1434
BspHI	TCATGA	1 cut(s)	417
BspLI	GGNNCC	8 cut(s)	103, 331, 559, 1056, 1093, 1314, 1472, 1507
BspPI	GGATC	8 cut(s)	281, 304, 324, 337, 580, 1088, 1093, 1351
BspQI	GCTCTTC	2 cut(s)	890, 1480
BspT107I	GGYRCC	3 cut(s)	557, 1054, 1091
BspTNI	GGTCTC	1 cut(s)	1528
BsrBI	CCGCTC	2 cut(s)	141, 423
BsrDI	GCAATG	1 cut(s)	920
BsrFI	RCCGGY	7 cut(s)	200, 216, 269, 486, 525, 817, 1038
BsrI	ACTGG	1 cut(s)	1132
BssAI	RCCGGY	7 cut(s)	200, 216, 269, 486, 525, 817, 1038
BssECI	CCNNGG	9 cut(s)	27, 97, 157, 396, 397, 589, 621, 1076, 1307
BssHII	GCGCGC	1 cut(s)	77
BssMI	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
BssNI	GRCGYC	3 cut(s)	267, 509, 558
BssSI	CACGAG	1 cut(s)	1257
Bst2BI	CACGAG	1 cut(s)	1257
Bst2UI	CCWGG	5 cut(s)	305, 623, 1078, 1308, 1475
Bst4CI	ACNGT	9 cut(s)	57, 115, 194, 415, 947, 1096, 1162, 1382, 1445
Bst6I	CTCTTC	4 cut(s)	41, 890, 1284, 1480
BstACI	GRCGYC	3 cut(s)	267, 509, 558
BstAPI	GCANNNNNTGC	1 cut(s)	1457
BstBAI	YACGTR	1 cut(s)	709
BstC8I	GCNNGC	6 cut(s)	79, 164, 271, 381, 819, 902
BstDEI	CTNAG	5 cut(s)	638, 692, 890, 1301, 1336
BstDSI	CCRYGG	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	663, 1367, 1462
BstFNI	CGCG	2 cut(s)	79, 1434
BstH2I	RGCGCY	1 cut(s)	561
BstHHI	GCGC	4 cut(s)	79, 81, 560, 1434
BstKTI	GATC	9 cut(s)	289, 312, 332, 588, 1083, 1101, 1359, 1387, 1570
BstMAI	GTCTC	4 cut(s)	262, 878, 1075, 1528
BstMBI	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
BstMCI	CGRYCG	1 cut(s)	487
BstMWI	GCNNNNNNNGC	8 cut(s)	270, 380, 564, 763, 1114, 1457, 1487, 1499
BstNI	CCWGG	5 cut(s)	305, 623, 1078, 1308, 1475
BstUI	CGCG	2 cut(s)	79, 1434
BstV1I	GCAGC	3 cut(s)	753, 802, 1477
BstV2I	GAAGAC	2 cut(s)	472, 1329
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
Bsu36I	CCTNAGG	1 cut(s)	692
BsuRI	GGCC	8 cut(s)	294, 356, 383, 407, 821, 1012, 1117, 1306
BtgI	CCRYGG	1 cut(s)	589
BtrI	CACGTC	3 cut(s)	256, 549, 847
BtsCI	GGATG	3 cut(s)	663, 1367, 1462
BtsI	GCAGTG	1 cut(s)	911
BtsIMutI	CAGTG	2 cut(s)	911, 1298
Cac8I	GCNNGC	6 cut(s)	79, 164, 271, 381, 819, 902
CciI	TCATGA	1 cut(s)	417
CfoI	GCGC	4 cut(s)	79, 81, 560, 1434
Cfr10I	RCCGGY	7 cut(s)	200, 216, 269, 486, 525, 817, 1038
Cfr13I	GGNCC	7 cut(s)	101, 355, 439, 580, 1010, 1115, 1313
Cfr9I	CCCGGG	1 cut(s)	397
CseI	GACGC	3 cut(s)	34, 275, 498
Csp6I	GTAC	6 cut(s)	796, 880, 1092, 1221, 1391, 1579
CspAI	ACCGGT	3 cut(s)	486, 525, 1038
CviQI	GTAC	6 cut(s)	796, 880, 1092, 1221, 1391, 1579
DdeI	CTNAG	5 cut(s)	638, 692, 890, 1301, 1336
DinI	GGCGCC	1 cut(s)	559
DpnI	GATC	9 cut(s)	288, 311, 331, 587, 1082, 1100, 1358, 1386, 1569
DpnII	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
DraI	TTTAAA	1 cut(s)	1182
DriI	GACNNNNNGTC	1 cut(s)	835
EaeI	YGGCCR	3 cut(s)	292, 405, 819
Eam1104I	CTCTTC	4 cut(s)	41, 890, 1284, 1480
Eam1105I	GACNNNNNGTC	1 cut(s)	835
EarI	CTCTTC	4 cut(s)	41, 890, 1284, 1480
EciI	GGCGGA	1 cut(s)	532
Ecl136II	GAGCTC	1 cut(s)	342
Eco24I	GRGCYC	2 cut(s)	344, 902
Eco31I	GGTCTC	1 cut(s)	1528
Eco47I	GGWCC	4 cut(s)	101, 439, 580, 1313
Eco53kI	GAGCTC	1 cut(s)	342
Eco57I	CTGAAG	1 cut(s)	722
Eco72I	CACGTG	1 cut(s)	709
Eco81I	CCTNAGG	1 cut(s)	692
Eco88I	CYCGRG	2 cut(s)	397, 758
EcoICRI	GAGCTC	1 cut(s)	342
EcoO109I	RGGNCCY	4 cut(s)	101, 439, 580, 1313
EcoRI	GAATTC	1 cut(s)	238
EcoRII	CCWGG	5 cut(s)	303, 621, 1076, 1306, 1473
EcoT22I	ATGCAT	1 cut(s)	1213
EcoT38I	GRGCYC	2 cut(s)	344, 902
EgeI	GGCGCC	1 cut(s)	559
EheI	GGCGCC	1 cut(s)	559
Esp3I	CGTCTC	1 cut(s)	262
FaqI	GGGAC	3 cut(s)	379, 488, 1326
FauI	CCCGC	4 cut(s)	454, 676, 909, 1162
FbaI	TGATCA	1 cut(s)	1384
FblI	GTMKAC	2 cut(s)	173, 512
Fnu4HI	GCNGC	5 cut(s)	408, 424, 767, 791, 1491
FokI	GGATG	3 cut(s)	650, 1354, 1469
FriOI	GRGCYC	2 cut(s)	344, 902
Fsp4HI	GCNGC	5 cut(s)	408, 424, 767, 791, 1491
FspBI	CTAG	3 cut(s)	990, 1548, 1583
GlaI	GCGC	4 cut(s)	78, 80, 559, 1433
GluI	GCNGC	5 cut(s)	408, 424, 767, 791, 1491
GsaI	CCCAGC	4 cut(s)	379, 520, 604, 1375
GsuI	CTGGAG	1 cut(s)	244
HaeII	RGCGCY	1 cut(s)	561
HaeIII	GGCC	8 cut(s)	294, 356, 383, 407, 821, 1012, 1117, 1306
HgaI	GACGC	3 cut(s)	34, 275, 498
HhaI	GCGC	4 cut(s)	79, 81, 560, 1434
Hin1I	GRCGYC	3 cut(s)	267, 509, 558
Hin6I	GCGC	4 cut(s)	77, 79, 558, 1432
HinP1I	GCGC	4 cut(s)	77, 79, 558, 1432
HincII	GTYRAC	2 cut(s)	174, 513
HindII	GTYRAC	2 cut(s)	174, 513
HindIII	AAGCTT	1 cut(s)	1169
HinfI	GANTC	7 cut(s)	209, 281, 386, 617, 886, 1514, 1586
HphI	GGTGA	3 cut(s)	16, 1300, 1394
Hpy166II	GTNNAC	6 cut(s)	60, 174, 253, 513, 538, 880
Hpy188I	TCNGA	5 cut(s)	98, 286, 329, 891, 1339
Hpy8I	GTNNAC	6 cut(s)	60, 174, 253, 513, 538, 880
Hpy99I	CGWCG	7 cut(s)	119, 122, 194, 269, 514, 806, 841
HpyAV	CCTTC	3 cut(s)	27, 571, 865
HpyCH4III	ACNGT	9 cut(s)	57, 115, 194, 415, 947, 1096, 1162, 1382, 1445
HpyCH4IV	ACGT	8 cut(s)	255, 534, 548, 570, 708, 804, 846, 1428
HpyCH4V	TGCA	5 cut(s)	1211, 1367, 1451, 1520, 1564
HpyF10VI	GCNNNNNNNGC	8 cut(s)	270, 380, 564, 763, 1114, 1457, 1487, 1499
HpyF3I	CTNAG	5 cut(s)	638, 692, 890, 1301, 1336
HpySE526I	ACGT	8 cut(s)	255, 534, 548, 570, 708, 804, 846, 1428
Hsp92I	GRCGYC	3 cut(s)	267, 509, 558
HspAI	GCGC	4 cut(s)	77, 79, 558, 1432
KasI	GGCGCC	1 cut(s)	557
Kpn2I	TCCGGA	1 cut(s)	573
KpnI	GGTACC	1 cut(s)	1095
KroI	GCCGGC	2 cut(s)	269, 817
KroNI	GCCGGC	2 cut(s)	271, 819
Ksp22I	TGATCA	1 cut(s)	1384
Kzo9I	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
LguI	GCTCTTC	2 cut(s)	890, 1480
LmnI	GCTCC	5 cut(s)	146, 339, 347, 750, 1505
Lsp1109I	GCAGC	3 cut(s)	753, 802, 1477
LweI	GCATC	4 cut(s)	804, 1198, 1376, 1447
MaeI	CTAG	3 cut(s)	990, 1548, 1583
MaeII	ACGT	8 cut(s)	255, 534, 548, 570, 708, 804, 846, 1428
MaeIII	GTNAC	4 cut(s)	549, 709, 1247, 1288
MalI	GATC	9 cut(s)	288, 311, 331, 587, 1082, 1100, 1358, 1386, 1569
MbiI	CCGCTC	2 cut(s)	141, 423
MboI	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
MfeI	CAATTG	1 cut(s)	1521
MflI	RGATCY	1 cut(s)	329
MhlI	GDGCHC	3 cut(s)	344, 902, 945
MluCI	AATT	4 cut(s)	238, 1177, 1231, 1521
Mly113I	GGCGCC	1 cut(s)	558
MlyI	GAGTC	5 cut(s)	275, 395, 611, 880, 1523
MmeI	TCCRAC	3 cut(s)	255, 1212, 1384
Mph1103I	ATGCAT	1 cut(s)	1213
MroI	TCCGGA	1 cut(s)	573
MroNI	GCCGGC	2 cut(s)	269, 817
MroXI	GAANNNNTTC	4 cut(s)	368, 527, 1172, 1278
MseI	TTAA	5 cut(s)	197, 807, 1181, 1497, 1557
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	793
MunI	CAATTG	1 cut(s)	1521
Mva1269I	GAATGC	1 cut(s)	1141
MvaI	CCWGG	5 cut(s)	305, 623, 1078, 1308, 1475
MvnI	CGCG	2 cut(s)	79, 1434
MwoI	GCNNNNNNNGC	8 cut(s)	270, 380, 564, 763, 1114, 1457, 1487, 1499
NaeI	GCCGGC	2 cut(s)	271, 819
NarI	GGCGCC	1 cut(s)	558
NciI	CCSGG	7 cut(s)	291, 314, 353, 398, 399, 506, 1009
NdeII	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
NgoMIV	GCCGGC	2 cut(s)	269, 817
NlaIV	GGNNCC	8 cut(s)	103, 331, 559, 1056, 1093, 1314, 1472, 1507
NmeAIII	GCCGAG	4 cut(s)	8, 138, 409, 1577
NmuCI	GTSAC	4 cut(s)	549, 709, 1247, 1288
NsiI	ATGCAT	1 cut(s)	1213
PagI	TCATGA	1 cut(s)	417
PauI	GCGCGC	1 cut(s)	77
PciSI	GCTCTTC	2 cut(s)	890, 1480
PcsI	WCGNNNNNNNCGW	6 cut(s)	261, 305, 474, 480, 518, 783
PctI	GAATGC	1 cut(s)	1141
PdiI	GCCGGC	2 cut(s)	271, 819
PdmI	GAANNNNTTC	4 cut(s)	368, 527, 1172, 1278
PfeI	GAWTC	2 cut(s)	209, 1586
PfoI	TCCNGGA	2 cut(s)	312, 1473
PinAI	ACCGGT	3 cut(s)	486, 525, 1038
PkrI	GCNGC	5 cut(s)	409, 425, 768, 792, 1492
PleI	GAGTC	5 cut(s)	275, 394, 611, 880, 1522
PluTI	GGCGCC	1 cut(s)	561
PmaCI	CACGTG	1 cut(s)	709
PmlI	CACGTG	1 cut(s)	709
PpsI	GAGTC	5 cut(s)	275, 394, 611, 880, 1522
Ppu21I	YACGTR	1 cut(s)	709
PpuMI	RGGWCCY	4 cut(s)	101, 439, 580, 1313
Psp124BI	GAGCTC	1 cut(s)	344
Psp5II	RGGWCCY	4 cut(s)	101, 439, 580, 1313
Psp6I	CCWGG	5 cut(s)	303, 621, 1076, 1306, 1473
PspCI	CACGTG	1 cut(s)	709
PspFI	CCCAGC	4 cut(s)	375, 516, 600, 1371
PspGI	CCWGG	5 cut(s)	303, 621, 1076, 1306, 1473
PspN4I	GGNNCC	8 cut(s)	103, 331, 559, 1056, 1093, 1314, 1472, 1507
PspPI	GGNCC	7 cut(s)	101, 355, 439, 580, 1010, 1115, 1313
PspPPI	RGGWCCY	4 cut(s)	101, 439, 580, 1313
PsrI	GAACNNNNNNTAC	2 cut(s)	515, 547
PsuI	RGATCY	1 cut(s)	329
PteI	GCGCGC	1 cut(s)	77
RsaI	GTAC	6 cut(s)	797, 881, 1093, 1222, 1392, 1580
RsaNI	GTAC	6 cut(s)	796, 880, 1092, 1221, 1391, 1579
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	344
SalI	GTCGAC	2 cut(s)	172, 511
SapI	GCTCTTC	2 cut(s)	890, 1480
SaqAI	TTAA	5 cut(s)	197, 807, 1181, 1497, 1557
SatI	GCNGC	5 cut(s)	408, 424, 767, 791, 1491
Sau3AI	GATC	9 cut(s)	286, 309, 329, 585, 1080, 1098, 1356, 1384, 1567
Sau96I	GGNCC	7 cut(s)	101, 355, 439, 580, 1010, 1115, 1313
SchI	GAGTC	5 cut(s)	275, 395, 611, 880, 1523
SduI	GDGCHC	3 cut(s)	344, 902, 945
SfaNI	GCATC	4 cut(s)	804, 1198, 1376, 1447
SfoI	GGCGCC	1 cut(s)	559
SinI	GGWCC	4 cut(s)	101, 439, 580, 1313
SmaI	CCCGGG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
Sse9I	AATT	4 cut(s)	238, 1177, 1231, 1521
SsiI	CCGC	9 cut(s)	139, 408, 423, 447, 543, 669, 793, 902, 1155
SspDI	GGCGCC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	990, 1548, 1583
SstI	GAGCTC	1 cut(s)	344
TaaI	ACNGT	9 cut(s)	57, 115, 194, 415, 947, 1096, 1162, 1382, 1445
TaiI	ACGT	8 cut(s)	258, 537, 551, 573, 711, 807, 849, 1431
TasI	AATT	4 cut(s)	238, 1177, 1231, 1521
TatI	WGTACW	1 cut(s)	1390
TauI	GCSGC	2 cut(s)	410, 426
TfiI	GAWTC	2 cut(s)	209, 1586
Tru1I	TTAA	5 cut(s)	197, 807, 1181, 1497, 1557
Tru9I	TTAA	5 cut(s)	197, 807, 1181, 1497, 1557
TscAI	CASTG	2 cut(s)	911, 1305
TseFI	GTSAC	4 cut(s)	549, 709, 1247, 1288
TseI	GCWGC	3 cut(s)	766, 790, 1490
Tsp45I	GTSAC	4 cut(s)	549, 709, 1247, 1288
TspDTI	ATGAA	3 cut(s)	265, 377, 1439
TspGWI	ACGGA	3 cut(s)	214, 490, 1235
TspMI	CCCGGG	1 cut(s)	397
TspRI	CASTG	2 cut(s)	911, 1305
VpaK11BI	GGWCC	4 cut(s)	101, 439, 580, 1313
XapI	RAATTY	1 cut(s)	238
XmaI	CCCGGG	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	173, 512
XmnI	GAANNNNTTC	4 cut(s)	368, 527, 1172, 1278
XspI	CTAG	3 cut(s)	990, 1548, 1583
Zsp2I	ATGCAT	1 cut(s)	1213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.