Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

14692165 .. 14695323

Gene Structure 3159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0157500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTCGAAGATATGATAGCCGTACAACAATATTCTCCCCAGAAGGCCGTCTCTACCAAGTTGAGTATGCCATGGAAGCCATTGGAAATGCAGGAACTGCAATTGGTATATTGTCGAAAGATGGAGTTGTGTTGGTAGGTGAGAAGAAAGTGACTTCCAAGCTCCTTCAAACCTCTACATCAACTGAGAAGATGTACAAGATAGATGACCATGTTGCATGTGCTGTGGCTGGAATAATGTCTGATGCCAACATCCTTATCAACACAGCTAGGGTTCAAGCACAGCGGTATACATTTTCTTACCAGGAGCCAATGCCGGTTGAACAACTAGTCCAATCTCTCTGTGACACTAAACAAGGCTACACACAGTTTGGTGGGCTTCGTCCATTTGGTGTTTCATTTCTATTTGCAGGCTGGGACAAGAATTATGGTTTCCAGCTTTACATGAGTGACCCAAGTGGAAACTATGGTGGCTGGAAGGCTGCAGCTATTGGGGCAAACAACCAGGCAGCACAGTCGATGCTTAAGCAGGACTACAAGGATGATATAACAAGAGAAGAGGCTGTTCAGCTTGCACTGAAGGTGCTCAGTAAGACAATGGACAGCACTAGTCTGACCTCAGACAAGCTTGAATTGGCTGAAGTTTTCGTATTGCCTTCAGGTAAGGTGAAGTACCAGGTTGTCTCACCGGATGCACTGAGCAAACTCTTGATCAAGAGTGGAGTGACACAACCTGCTGCTGAGGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

250

Amino Acids

27.29

Weight (kDa)

6.61

Isoelectric Point (pI)

46.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	5 - 27	2.4e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	30 - 214	1.1e-60	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	742
AccI	GTMKAC	1 cut(s)	290
AciI	CCGC	1 cut(s)	286
AcuI	CTGAAG	3 cut(s)	599, 642, 660
AfaI	GTAC	3 cut(s)	25, 197, 674
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	4 cut(s)	170, 278, 323, 632
AhlI	ACTAGT	2 cut(s)	328, 608
AjnI	CCWGG	3 cut(s)	303, 504, 675
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	6 cut(s)	163, 269, 439, 488, 571, 628
AluI	AGCT	6 cut(s)	163, 269, 439, 488, 571, 628
Alw21I	GWGCWC	1 cut(s)	588
Alw26I	GTCTC	3 cut(s)	9, 56, 688
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	46, 744
ApeKI	GCWGC	4 cut(s)	482, 485, 509, 737
AsuHPI	GGTGA	3 cut(s)	152, 678, 679
Bbv12I	GWGCWC	1 cut(s)	588
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	469, 497, 521, 724
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	6, 33
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	3 cut(s)	305, 506, 677
BclI	TGATCA	1 cut(s)	711
BcoDI	GTCTC	3 cut(s)	9, 56, 688
BcuI	ACTAGT	2 cut(s)	328, 608
BfaI	CTAG	3 cut(s)	270, 329, 609
BfmI	CTRYAG	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	483, 486, 510, 738
BlsI	GCNGC	4 cut(s)	484, 487, 511, 739
Bme1390I	CCNGG	3 cut(s)	305, 506, 677
BmiI	GGNNCC	1 cut(s)	309
BmrFI	CCNGG	3 cut(s)	305, 506, 677
BmsI	GCATC	3 cut(s)	235, 510, 682
Bpu10I	CCTNAGC	1 cut(s)	741
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	688
Bse118I	RCCGGY	1 cut(s)	316
BseBI	CCWGG	3 cut(s)	305, 506, 677
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	3 cut(s)	252, 547, 697
BseMII	CTCAG	5 cut(s)	177, 601, 633, 689, 732
BseXI	GCAGC	4 cut(s)	469, 497, 521, 724
BseYI	CCCAGC	1 cut(s)	414
BshFI	GGCC	2 cut(s)	48, 746
BsiHKAI	GWGCWC	1 cut(s)	588
BsiSI	CCGG	2 cut(s)	317, 689
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	9, 56, 688
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	2 cut(s)	48, 746
Bsp1286I	GDGCHC	1 cut(s)	588
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	711
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	48, 746
BspCNI	CTCAG	5 cut(s)	178, 600, 632, 690, 733
BspLI	GGNNCC	1 cut(s)	309
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	524
BsrFI	RCCGGY	1 cut(s)	316
BsrGI	TGTACA	1 cut(s)	195
BssAI	RCCGGY	1 cut(s)	316
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	711
BssNAI	GTATAC	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	72
Bst1107I	GTATAC	1 cut(s)	291
Bst2UI	CCWGG	3 cut(s)	305, 506, 677
Bst4CI	ACNGT	2 cut(s)	369, 516
Bst6I	CTCTTC	1 cut(s)	552
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	412, 573
BstDEI	CTNAG	5 cut(s)	186, 587, 619, 698, 741
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	252, 547, 697
BstKTI	GATC	1 cut(s)	714
BstMAI	GTCTC	3 cut(s)	9, 56, 688
BstMBI	GATC	1 cut(s)	711
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
BstNI	CCWGG	3 cut(s)	305, 506, 677
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	3 cut(s)	303, 504, 675
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	469, 497, 521, 724
BstZ17I	GTATAC	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	48, 746
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	252, 547, 697
BtsIMutI	CAGTG	2 cut(s)	575, 695
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	412, 573
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr10I	RCCGGY	1 cut(s)	316
CsiI	ACCWGGT	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	24, 196, 673
CviAII	CATG	4 cut(s)	73, 212, 219, 445
CviQI	GTAC	3 cut(s)	24, 196, 673
DdeI	CTNAG	5 cut(s)	186, 587, 619, 698, 741
DpnI	GATC	1 cut(s)	713
DpnII	GATC	1 cut(s)	711
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	746
Eco57I	CTGAAG	3 cut(s)	599, 642, 660
EcoRII	CCWGG	3 cut(s)	303, 504, 675
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	76, 215, 222, 448
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	72, 211, 218, 444
FbaI	TGATCA	1 cut(s)	711
FblI	GTMKAC	1 cut(s)	290
Fnu4HI	GCNGC	4 cut(s)	483, 486, 510, 738
FokI	GGATG	3 cut(s)	239, 554, 704
Fsp4HI	GCNGC	4 cut(s)	483, 486, 510, 738
FspBI	CTAG	3 cut(s)	270, 329, 609
GluI	GCNGC	4 cut(s)	483, 486, 510, 738
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	2 cut(s)	48, 746
HapII	CCGG	2 cut(s)	317, 689
Hin1II	CATG	4 cut(s)	76, 215, 222, 448
HindIII	AAGCTT	1 cut(s)	626
HpaII	CCGG	2 cut(s)	317, 689
HphI	GGTGA	3 cut(s)	152, 678, 679
Hpy166II	GTNNAC	1 cut(s)	291
Hpy188I	TCNGA	3 cut(s)	244, 615, 622
Hpy188III	TCNNGA	3 cut(s)	6, 709, 715
Hpy8I	GTNNAC	1 cut(s)	291
HpyAV	CCTTC	5 cut(s)	38, 176, 472, 574, 666
HpyCH4III	ACNGT	2 cut(s)	369, 516
HpyCH4V	TGCA	7 cut(s)	92, 101, 218, 410, 485, 575, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
HpyF3I	CTNAG	5 cut(s)	186, 587, 619, 698, 741
Hsp92II	CATG	4 cut(s)	76, 215, 222, 448
Ksp22I	TGATCA	1 cut(s)	711
Kzo9I	GATC	1 cut(s)	711
LmnI	GCTCC	2 cut(s)	168, 307
Lsp1109I	GCAGC	4 cut(s)	469, 497, 521, 724
LweI	GCATC	3 cut(s)	235, 510, 682
MabI	ACCWGGT	1 cut(s)	675
MaeI	CTAG	3 cut(s)	270, 329, 609
MaeIII	GTNAC	4 cut(s)	151, 344, 449, 724
MalI	GATC	1 cut(s)	713
MboI	GATC	1 cut(s)	711
MboII	GAAGA	4 cut(s)	21, 157, 202, 569
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	1 cut(s)	588
MluCI	AATT	3 cut(s)	102, 424, 632
MnlI	CCTC	4 cut(s)	184, 553, 628, 736
MseI	TTAA	2 cut(s)	525, 751
MspA1I	CMGCKG	1 cut(s)	286
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	2 cut(s)	317, 689
MspR9I	CCNGG	3 cut(s)	305, 506, 677
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	3 cut(s)	305, 506, 677
MwoI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	1 cut(s)	711
NlaIII	CATG	4 cut(s)	76, 215, 222, 448
NlaIV	GGNNCC	1 cut(s)	309
NmuCI	GTSAC	4 cut(s)	151, 344, 449, 724
NspI	RCATGY	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	746
PkrI	GCNGC	4 cut(s)	484, 487, 511, 739
Psp6I	CCWGG	3 cut(s)	303, 504, 675
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	3 cut(s)	303, 504, 675
PspN4I	GGNNCC	1 cut(s)	309
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	25, 197, 674
RsaNI	GTAC	3 cut(s)	24, 196, 673
SaqAI	TTAA	2 cut(s)	525, 751
SatI	GCNGC	4 cut(s)	483, 486, 510, 738
Sau3AI	GATC	1 cut(s)	711
ScrFI	CCNGG	3 cut(s)	305, 506, 677
SduI	GDGCHC	1 cut(s)	588
SexAI	ACCWGGT	1 cut(s)	675
SfaNI	GCATC	3 cut(s)	235, 510, 682
SfcI	CTRYAG	1 cut(s)	483
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	2 cut(s)	328, 608
Sse9I	AATT	3 cut(s)	102, 424, 632
SseBI	AGGCCT	1 cut(s)	746
SsiI	CCGC	1 cut(s)	286
SspI	AATATT	1 cut(s)	33
SspMI	CTAG	3 cut(s)	270, 329, 609
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	303, 504, 675
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	369, 516
TaqI	TCGA	3 cut(s)	7, 116, 518
TasI	AATT	3 cut(s)	102, 424, 632
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	525, 751
Tru9I	TTAA	2 cut(s)	525, 751
TscAI	CASTG	2 cut(s)	582, 702
TseFI	GTSAC	4 cut(s)	151, 344, 449, 724
TseI	GCWGC	4 cut(s)	482, 485, 509, 737
Tsp45I	GTSAC	4 cut(s)	151, 344, 449, 724
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	2 cut(s)	582, 702
Vha464I	CTTAAG	1 cut(s)	524
XceI	RCATGY	1 cut(s)	222
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	3 cut(s)	270, 329, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.