Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

59973830 .. 59976302

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0443700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCAGGCACACGAGGTCATATGGGATCCATATCGTGGTCATAGGGAGGCTCATCCATTATTGGAAATCACATTTTACACAGGAATGCTTAAGTGTTTAGATATTGTGGAACCATATTATCCTGATAGGGTTCTAAGACAATTTGGTCGAGTTCAAACAATTCCTCGCAACCCTTACACCCCATCTCGTGTTCGACGAGTTTCTGATTCCAAATCGTACAAGGTTGTGTATGAGTACTTTGATGGATTGTGGCAAAGATGGCGAGATCACGTGTTAGCAGATGCCAACCGAAGCACTCCAGTTAAGTTTTCATATGAATGCACTCCAGAATACTTATCGTGGTACCAAAAGATCACACATCCCTATGTTCAACACCCTGATCGGGTGTCTGCTGCAGTTGATTCAAATGAGGAAAATCATCCATTACAGGGAACACTCGACCAATGGCATTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

151

Amino Acids

18.07

Weight (kDa)

6.7

Isoelectric Point (pI)

37.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	3 - 116	8.2e-13	Plant mobile domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	144
Acc65I	GGTACC	1 cut(s)	342
AccB1I	GGYRCC	1 cut(s)	342
AccB7I	CCANNNNNTGG	1 cut(s)	35
AclWI	GGATC	2 cut(s)	20, 33
AcvI	CACGTG	1 cut(s)	271
AfaI	GTAC	3 cut(s)	218, 236, 344
AfiI	CCNNNNNNNGG	3 cut(s)	35, 382, 428
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	270
AgsI	TTSAA	3 cut(s)	155, 371, 405
AlwI	GGATC	2 cut(s)	20, 33
ApeKI	GCWGC	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	342
BamHI	GGATCC	1 cut(s)	25
BanI	GGYRCC	1 cut(s)	342
BauI	CACGAG	2 cut(s)	11, 186
BbrPI	CACGTG	1 cut(s)	271
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	3 cut(s)	190, 236, 252
BfmI	CTRYAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	89
BisI	GCNGC	1 cut(s)	393
BlsI	GCNGC	1 cut(s)	394
BmcAI	AGTACT	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	27, 111, 344
BmsI	GCATC	1 cut(s)	271
BpmI	CTGGAG	2 cut(s)	282, 309
BsaAI	YACGTR	1 cut(s)	271
BsaBI	GATNNNNATC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 382, 428
Bse1I	ACTGG	1 cut(s)	299
Bse8I	GATNNNNATC	1 cut(s)	30
BseGI	GGATG	3 cut(s)	52, 358, 418
BseJI	GATNNNNATC	1 cut(s)	30
BseLI	CCNNNNNNNGG	3 cut(s)	35, 382, 428
BseNI	ACTGG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	342
BslI	CCNNNNNNNGG	3 cut(s)	35, 382, 428
BsmI	GAATGC	3 cut(s)	90, 323, 448
Bsp143I	GATC	4 cut(s)	25, 265, 351, 379
BspHI	TCATGA	1 cut(s)	452
BspLI	GGNNCC	3 cut(s)	27, 111, 344
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	2 cut(s)	20, 33
BspT107I	GGYRCC	1 cut(s)	342
BspTI	CTTAAG	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	299
BssMI	GATC	4 cut(s)	25, 265, 351, 379
BssSI	CACGAG	2 cut(s)	11, 186
Bst2BI	CACGAG	2 cut(s)	11, 186
BstAFI	CTTAAG	1 cut(s)	89
BstBAI	YACGTR	1 cut(s)	271
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	134
BstF5I	GGATG	3 cut(s)	52, 358, 418
BstKTI	GATC	4 cut(s)	28, 268, 354, 382
BstMBI	GATC	4 cut(s)	25, 265, 351, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstSFI	CTRYAG	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	52, 358, 418
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	1 cut(s)	452
Csp6I	GTAC	3 cut(s)	217, 235, 343
CviAII	CATG	1 cut(s)	453
CviJI	RGCY	1 cut(s)	50
CviKI_1	RGCY	1 cut(s)	50
CviQI	GTAC	3 cut(s)	217, 235, 343
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	4 cut(s)	27, 267, 353, 381
DpnII	GATC	4 cut(s)	25, 265, 351, 379
DrdI	GACNNNNNNGTC	1 cut(s)	144
DseDI	GACNNNNNNGTC	1 cut(s)	144
Eco72I	CACGTG	1 cut(s)	271
FaeI	CATG	1 cut(s)	456
FatI	CATG	1 cut(s)	452
FauNDI	CATATG	2 cut(s)	20, 313
Fnu4HI	GCNGC	1 cut(s)	393
FokI	GGATG	3 cut(s)	39, 345, 405
Fsp4HI	GCNGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	393
GsuI	CTGGAG	2 cut(s)	282, 309
Hin1II	CATG	1 cut(s)	456
HinfI	GANTC	2 cut(s)	206, 401
Hpy188I	TCNGA	1 cut(s)	205
Hpy188III	TCNNGA	3 cut(s)	122, 326, 453
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	3 cut(s)	4, 321, 395
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	1 cut(s)	456
KpnI	GGTACC	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	25, 265, 351, 379
LpnPI	CCDG	6 cut(s)	66, 135, 312, 339, 390, 413
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	1 cut(s)	271
MaeII	ACGT	1 cut(s)	270
MalI	GATC	4 cut(s)	27, 267, 353, 381
MboI	GATC	4 cut(s)	25, 265, 351, 379
MflI	RGATCY	1 cut(s)	25
MluCI	AATT	2 cut(s)	140, 159
MnlI	CCTC	4 cut(s)	7, 40, 174, 403
MseI	TTAA	2 cut(s)	90, 303
MslI	CAYNNNNRTG	3 cut(s)	83, 316, 363
MspCI	CTTAAG	1 cut(s)	89
Mva1269I	GAATGC	3 cut(s)	90, 323, 448
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeI	CATATG	2 cut(s)	20, 313
NdeII	GATC	4 cut(s)	25, 265, 351, 379
NlaIII	CATG	1 cut(s)	456
NlaIV	GGNNCC	3 cut(s)	27, 111, 344
PagI	TCATGA	1 cut(s)	452
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PctI	GAATGC	3 cut(s)	90, 323, 448
PfeI	GAWTC	2 cut(s)	206, 401
PflMI	CCANNNNNTGG	1 cut(s)	35
PkrI	GCNGC	1 cut(s)	394
PmaCI	CACGTG	1 cut(s)	271
PmlI	CACGTG	1 cut(s)	271
Ppu21I	YACGTR	1 cut(s)	271
PspCI	CACGTG	1 cut(s)	271
PspN4I	GGNNCC	3 cut(s)	27, 111, 344
PstI	CTGCAG	1 cut(s)	397
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	3 cut(s)	218, 236, 344
RsaNI	GTAC	3 cut(s)	217, 235, 343
RseI	CAYNNNNRTG	3 cut(s)	83, 316, 363
SaqAI	TTAA	2 cut(s)	90, 303
SatI	GCNGC	1 cut(s)	393
Sau3AI	GATC	4 cut(s)	25, 265, 351, 379
ScaI	AGTACT	1 cut(s)	236
SetI	ASST	3 cut(s)	18, 225, 273
SfaNI	GCATC	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	393
SmiMI	CAYNNNNRTG	3 cut(s)	83, 316, 363
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	140, 159
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	3 cut(s)	148, 193, 438
TasI	AATT	2 cut(s)	140, 159
TatI	WGTACW	1 cut(s)	234
TfiI	GAWTC	2 cut(s)	206, 401
Tru1I	TTAA	2 cut(s)	90, 303
Tru9I	TTAA	2 cut(s)	90, 303
TseI	GCWGC	1 cut(s)	392
TspDTI	ATGAA	3 cut(s)	300, 330, 441
Van91I	CCANNNNNTGG	1 cut(s)	35
Vha464I	CTTAAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.