Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

40555402 .. 40621797

Gene Structure 66396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0290000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCGTTTCACTACCAAAACCTCACGCTCTTTCTCTCTCTACTTTCTCTCCCTACCCTCTCCCTCGCCCTCTCCGCCTTCTCTCCCGTTGACAACTACCTCTTCGACTGCGGCTCCACCGTTGACTCCACCTTCGACGATGGCCGCCGCTTCGTCCCGGATTCGTCCACTTCAGCTCGCTCAATTTCACTCCGAAACCAAAACCCTAATCCCAATTCGCCCCAAATTTACCAAACCGCTAGGGTTTTCCGGCGGCCGTCCAAGTACGAGTTCCAGATCCACGACCCGGGGACCCAGATGGTACGCCTCCATTTCCAGAGCTTCAATTCTTGTAATTTCGATTGGAATAGTGCTCAATTTCATGTCTTGGTCAATGGGTTTGTGGTTTTGAAAGTCAACAACTTTGGATTTGGGGGTGTATTAGGTCCTATGATTAAGGAGTACTTGATTTGGGTCGGTACTGGAAAGCTTGTAATTCGATTTGTTCCTGATAAAAAGTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTTCTGCACCTAAGGACCTCGTTGCAGATACTGCAATGTATGTGAGTGATGGGAAAGTTGTGGGTTTTGATGGGTTGGCTAAGCAAGCTCTTCAAGTTGTGCATAGGGTTAATGTGGGAGGTCATAAAGTGACGCCCTTTAATGATAGTCTGTGGAGGACTTGGATTACTGATGAGGAGTTTTTCGATTCGGGTTTCGGGTCGGAGAGGGTTTATTTTGGGGGGAGGATTAGGTATCAGGTTGGAGGGGCTAGCCGGGAAGTTGGTCCGGATAATGTGTACAACACTGCAAGATTGATTCGTAGTACGAATGCTTCGATACCGAATGTGAATGTGACATGGGTGTTTCCTGCAGTGGGTGGGTATAAGTATCTGGTTCGGATGCATTTCTGTGATTTTGCTAGTACTTCACTTGGTTTGCTGTATTTCAATGTTTATGTGAATGGGAATTTGGCATATGAAGATTTGGATTTGTCTAAGGCTGCAAATTATATGTTGGCTTCTCCGTTCTATGCGGATTTTGTGGTTGATGGAGATGATTCGGATTCTTTGACTGTAAGTGTAGGACCATCGAACGCTAGCGTGCCATACGCCATTGATGGTATATTGAATGGTATTGAGATCATGAAGTTGAATAACTCAGTTGGGAGTCTTGATGGCGAGCATTGTGCAGAGTGGGTTTTGAGGAGTTGGCCAAAGGGACATGTTAGTCTCTTGGTTCCTCTAGTTGCTGCTGCTTGTGTGCTGCTAAGCTTATCTATGGTTACGCGCAGGAGGATCATGAGGAAGAAGGAATCCGTGGCATGGACGAAACTGCCTGTGGATGTTTCAGAAGTTAATGCCAAGCATGGAAATACATCAATCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

466

Amino Acids

51.51

Weight (kDa)

7.14

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin_like	PF12819	36 - 387	9.3e-26	Malectin-like domain
Malectin	PF11721	211 - 347	2.1e-06	Malectin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1239
AccII	CGCG	1 cut(s)	1300
AccIII	TCCGGA	1 cut(s)	799
AciI	CCGC	7 cut(s)	75, 111, 145, 148, 237, 253, 1046
AclWI	GGATC	2 cut(s)	271, 1316
AcoI	YGGCCR	3 cut(s)	142, 254, 1223
AcsI	RAATTY	2 cut(s)	225, 979
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	665
AfaI	GTAC	7 cut(s)	266, 303, 443, 460, 812, 838, 937
AfiI	CCNNNNNNNGG	3 cut(s)	286, 887, 1335
AflIII	ACRYGT	1 cut(s)	1234
AgsI	TTSAA	6 cut(s)	325, 391, 626, 961, 1141, 1165
AjuI	GAANNNNNNNTTGG	4 cut(s)	254, 286, 965, 997
AluBI	AGCT	6 cut(s)	176, 321, 469, 504, 620, 1284
AluI	AGCT	6 cut(s)	176, 321, 469, 504, 620, 1284
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	1247
AlwI	GGATC	2 cut(s)	271, 1316
AlwNI	CAGNNNCTG	1 cut(s)	563
Ama87I	CYCGRG	1 cut(s)	286
Aor13HI	TCCGGA	1 cut(s)	799
AoxI	GGCC	3 cut(s)	142, 254, 1223
ApeKI	GCWGC	4 cut(s)	1013, 1262, 1265, 1276
ApoI	RAATTY	2 cut(s)	225, 979
ArsI	GACNNNNNNTTYG	2 cut(s)	116, 148
AspLEI	GCGC	1 cut(s)	1302
AspS9I	GGNCC	5 cut(s)	291, 425, 547, 797, 1097
AsuC2I	CCSGG	4 cut(s)	158, 287, 288, 788
AsuNHI	GCTAGC	2 cut(s)	782, 1109
AvaI	CYCGRG	1 cut(s)	286
AvaII	GGWCC	5 cut(s)	291, 425, 547, 797, 1097
AxyI	CCTNAGG	1 cut(s)	543
BalI	TGGCCA	1 cut(s)	1225
BarI	GAAGNNNNNNTAC	2 cut(s)	829, 861
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	4 cut(s)	1000, 1249, 1252, 1263
BccI	CCATC	8 cut(s)	134, 292, 575, 596, 1055, 1108, 1124, 1181
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	1181, 1215
BcnI	CCSGG	4 cut(s)	158, 287, 288, 788
BcoDI	GTCTC	1 cut(s)	1247
BfaI	CTAG	5 cut(s)	240, 783, 933, 1110, 1256
BfmI	CTRYAG	1 cut(s)	882
BisI	GCNGC	8 cut(s)	112, 145, 148, 254, 1014, 1263, 1266, 1277
BlpI	GCTNAGC	2 cut(s)	612, 1280
BlsI	GCNGC	8 cut(s)	113, 146, 149, 255, 1015, 1264, 1267, 1278
BmcAI	AGTACT	2 cut(s)	443, 937
Bme1390I	CCNGG	4 cut(s)	158, 287, 288, 788
Bme18I	GGWCC	5 cut(s)	291, 425, 547, 797, 1097
BmeT110I	CYCGRG	1 cut(s)	286
BmgT120I	GGNCC	5 cut(s)	291, 425, 547, 797, 1097
BmiI	GGNNCC	4 cut(s)	115, 292, 293, 1251
BmrFI	CCNGG	4 cut(s)	158, 287, 288, 788
BmsI	GCATC	1 cut(s)	903
BmtI	GCTAGC	2 cut(s)	786, 1113
Bpu1102I	GCTNAGC	2 cut(s)	612, 1280
BpuMI	CCSGG	4 cut(s)	158, 287, 288, 788
BsaHI	GRCGYC	1 cut(s)	665
BsaJI	CCNNGG	3 cut(s)	286, 287, 1329
BsaWI	WCCGGW	1 cut(s)	799
BsaXI	ACNNNNNCTCC	4 cut(s)	33, 63, 98, 128
Bsc4I	CCNNNNNNNGG	3 cut(s)	286, 887, 1335
Bse1I	ACTGG	1 cut(s)	466
Bse21I	CCTNAGG	1 cut(s)	543
Bse3DI	GCAATG	1 cut(s)	573
BseAI	TCCGGA	1 cut(s)	799
BseDI	CCNNGG	3 cut(s)	286, 287, 1329
BseGI	GGATG	2 cut(s)	918, 1360
BseLI	CCNNNNNNNGG	3 cut(s)	286, 887, 1335
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	1 cut(s)	1185
BseNI	ACTGG	1 cut(s)	466
BseRI	GAGGAG	2 cut(s)	722, 1231
BseX3I	CGGCCG	1 cut(s)	254
BseXI	GCAGC	4 cut(s)	1000, 1249, 1252, 1263
BsgI	GTGCAG	2 cut(s)	522, 1221
Bsh1236I	CGCG	1 cut(s)	1300
Bsh1285I	CGRYCG	1 cut(s)	257
BshFI	GGCC	3 cut(s)	144, 256, 1225
BsiEI	CGRYCG	1 cut(s)	257
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	286
BsiSI	CCGG	5 cut(s)	158, 250, 287, 787, 800
BslFI	GGGAC	3 cut(s)	140, 304, 1245
BslI	CCNNNNNNNGG	3 cut(s)	286, 887, 1335
BsmAI	GTCTC	1 cut(s)	1247
BsmFI	GGGAC	3 cut(s)	140, 304, 1245
BsmI	GAATGC	2 cut(s)	523, 847
BsnI	GGCC	3 cut(s)	144, 256, 1225
BsoBI	CYCGRG	1 cut(s)	286
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp13I	TCCGGA	1 cut(s)	799
Bsp1407I	TGTACA	1 cut(s)	810
Bsp143I	GATC	3 cut(s)	276, 1152, 1308
Bsp1720I	GCTNAGC	2 cut(s)	612, 1280
BspACI	CCGC	7 cut(s)	75, 111, 145, 148, 237, 253, 1046
BspANI	GGCC	3 cut(s)	144, 256, 1225
BspCNI	CTCAG	1 cut(s)	1184
BspEI	TCCGGA	1 cut(s)	799
BspFNI	CGCG	1 cut(s)	1300
BspHI	TCATGA	2 cut(s)	1155, 1311
BspLI	GGNNCC	4 cut(s)	115, 292, 293, 1251
BspMAI	CTGCAG	1 cut(s)	886
BspOI	GCTAGC	2 cut(s)	786, 1113
BspPI	GGATC	2 cut(s)	271, 1316
BspQI	GCTCTTC	1 cut(s)	627
BsrDI	GCAATG	1 cut(s)	573
BsrGI	TGTACA	1 cut(s)	810
BsrI	ACTGG	1 cut(s)	466
BssECI	CCNNGG	3 cut(s)	286, 287, 1329
BssMI	GATC	3 cut(s)	276, 1152, 1308
BssNI	GRCGYC	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	121, 1087
Bst6I	CTCTTC	2 cut(s)	107, 627
BstACI	GRCGYC	1 cut(s)	665
BstAPI	GCANNNNNTGC	1 cut(s)	563
BstAUI	TGTACA	1 cut(s)	810
BstC8I	GCNNGC	6 cut(s)	178, 618, 784, 1111, 1115, 1193
BstDEI	CTNAG	5 cut(s)	543, 612, 1008, 1171, 1280
BstDSI	CCRYGG	1 cut(s)	1329
BstF5I	GGATG	2 cut(s)	918, 1360
BstFNI	CGCG	1 cut(s)	1300
BstHHI	GCGC	1 cut(s)	1302
BstKTI	GATC	3 cut(s)	279, 1155, 1311
BstMAI	GTCTC	1 cut(s)	1247
BstMBI	GATC	3 cut(s)	276, 1152, 1308
BstMCI	CGRYCG	1 cut(s)	257
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 563, 617
BstNSI	RCATGY	1 cut(s)	1238
BstSCI	CCNGG	4 cut(s)	156, 285, 286, 786
BstSFI	CTRYAG	1 cut(s)	882
BstUI	CGCG	1 cut(s)	1300
BstV1I	GCAGC	4 cut(s)	1000, 1249, 1252, 1263
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BstZI	CGGCCG	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	3 cut(s)	144, 256, 1225
BtgI	CCRYGG	1 cut(s)	1329
BtsCI	GGATG	2 cut(s)	918, 1360
BtsI	GCAGTG	2 cut(s)	816, 891
BtsIMutI	CAGTG	2 cut(s)	816, 891
Cac8I	GCNNGC	6 cut(s)	178, 618, 784, 1111, 1115, 1193
CaiI	CAGNNNCTG	1 cut(s)	563
CciI	TCATGA	2 cut(s)	1155, 1311
CfoI	GCGC	1 cut(s)	1302
Cfr13I	GGNCC	5 cut(s)	291, 425, 547, 797, 1097
Cfr9I	CCCGGG	1 cut(s)	286
CseI	GACGC	1 cut(s)	673
Csp6I	GTAC	7 cut(s)	265, 302, 442, 459, 811, 837, 936
CviAII	CATG	7 cut(s)	362, 870, 1156, 1235, 1312, 1335, 1379
CviQI	GTAC	7 cut(s)	265, 302, 442, 459, 811, 837, 936
DdeI	CTNAG	5 cut(s)	543, 612, 1008, 1171, 1280
DpnI	GATC	3 cut(s)	278, 1154, 1310
DpnII	GATC	3 cut(s)	276, 1152, 1308
DrdI	GACNNNNNNGTC	1 cut(s)	1239
DseDI	GACNNNNNNGTC	1 cut(s)	1239
EaeI	YGGCCR	3 cut(s)	142, 254, 1223
EagI	CGGCCG	1 cut(s)	254
Eam1104I	CTCTTC	2 cut(s)	107, 627
EarI	CTCTTC	2 cut(s)	107, 627
EciI	GGCGGA	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	254
Eco47I	GGWCC	5 cut(s)	291, 425, 547, 797, 1097
Eco52I	CGGCCG	1 cut(s)	254
Eco57I	CTGAAG	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	543
Eco88I	CYCGRG	1 cut(s)	286
EcoO109I	RGGNCCY	3 cut(s)	291, 425, 547
EcoT22I	ATGCAT	1 cut(s)	918
FaeI	CATG	7 cut(s)	365, 873, 1159, 1238, 1315, 1338, 1382
FalI	AAGNNNNNCTT	4 cut(s)	428, 460, 488, 520
FaqI	GGGAC	3 cut(s)	140, 304, 1245
FatI	CATG	7 cut(s)	361, 869, 1155, 1234, 1311, 1334, 1378
FauNDI	CATATG	1 cut(s)	988
Fnu4HI	GCNGC	8 cut(s)	112, 145, 148, 254, 1014, 1263, 1266, 1277
FokI	GGATG	2 cut(s)	925, 1367
Fsp4HI	GCNGC	8 cut(s)	112, 145, 148, 254, 1014, 1263, 1266, 1277
FspBI	CTAG	5 cut(s)	240, 783, 933, 1110, 1256
GlaI	GCGC	1 cut(s)	1301
GluI	GCNGC	8 cut(s)	112, 145, 148, 254, 1014, 1263, 1266, 1277
HaeIII	GGCC	3 cut(s)	144, 256, 1225
HapII	CCGG	5 cut(s)	158, 250, 287, 787, 800
HgaI	GACGC	1 cut(s)	673
HhaI	GCGC	1 cut(s)	1302
Hin1I	GRCGYC	1 cut(s)	665
Hin1II	CATG	7 cut(s)	365, 873, 1159, 1238, 1315, 1338, 1382
Hin6I	GCGC	1 cut(s)	1300
HinP1I	GCGC	1 cut(s)	1300
HincII	GTYRAC	3 cut(s)	91, 124, 397
HindII	GTYRAC	3 cut(s)	91, 124, 397
HindIII	AAGCTT	3 cut(s)	467, 502, 1282
HinfI	GANTC	8 cut(s)	125, 161, 719, 829, 1070, 1076, 1180, 1325
HpaII	CCGG	5 cut(s)	158, 250, 287, 787, 800
Hpy166II	GTNNAC	5 cut(s)	91, 124, 168, 397, 811
Hpy188I	TCNGA	6 cut(s)	194, 736, 912, 1075, 1363, 1397
Hpy188III	TCNNGA	7 cut(s)	274, 316, 488, 800, 1156, 1184, 1312
Hpy8I	GTNNAC	5 cut(s)	91, 124, 168, 397, 811
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	88, 142, 1315
HpyCH4III	ACNGT	2 cut(s)	121, 1087
HpyCH4V	TGCA	9 cut(s)	539, 557, 566, 634, 821, 884, 916, 1016, 1202
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 563, 617
HpyF3I	CTNAG	5 cut(s)	543, 612, 1008, 1171, 1280
Hsp92I	GRCGYC	1 cut(s)	665
Hsp92II	CATG	7 cut(s)	365, 873, 1159, 1238, 1315, 1338, 1382
HspAI	GCGC	1 cut(s)	1300
KflI	GGGWCCC	1 cut(s)	291
Kpn2I	TCCGGA	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	276, 1152, 1308
LguI	GCTCTTC	1 cut(s)	627
LmnI	GCTCC	1 cut(s)	119
Lsp1109I	GCAGC	4 cut(s)	1000, 1249, 1252, 1263
LweI	GCATC	1 cut(s)	903
MaeI	CTAG	5 cut(s)	240, 783, 933, 1110, 1256
MaeIII	GTNAC	3 cut(s)	661, 865, 1294
MalI	GATC	3 cut(s)	278, 1154, 1310
MboI	GATC	3 cut(s)	276, 1152, 1308
MboII	GAAGA	4 cut(s)	94, 614, 1004, 1330
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	1225
MluCI	AATT	9 cut(s)	183, 214, 225, 325, 334, 356, 474, 979, 1018
MluNI	TGGCCA	1 cut(s)	1225
MlyI	GAGTC	2 cut(s)	119, 1189
MmeI	TCCRAC	2 cut(s)	714, 754
Mox20I	TGGCCA	1 cut(s)	1225
Mph1103I	ATGCAT	1 cut(s)	918
MroI	TCCGGA	1 cut(s)	799
MscI	TGGCCA	1 cut(s)	1225
MseI	TTAA	4 cut(s)	435, 642, 672, 1368
MslI	CAYNNNNRTG	1 cut(s)	921
Msp20I	TGGCCA	1 cut(s)	1225
MspI	CCGG	5 cut(s)	158, 250, 287, 787, 800
MspR9I	CCNGG	4 cut(s)	158, 287, 288, 788
Mva1269I	GAATGC	2 cut(s)	523, 847
MvnI	CGCG	1 cut(s)	1300
MwoI	GCNNNNNNNGC	3 cut(s)	74, 563, 617
NciI	CCSGG	4 cut(s)	158, 287, 288, 788
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	3 cut(s)	276, 1152, 1308
NheI	GCTAGC	2 cut(s)	782, 1109
NlaIII	CATG	7 cut(s)	365, 873, 1159, 1238, 1315, 1338, 1382
NlaIV	GGNNCC	4 cut(s)	115, 292, 293, 1251
NmuCI	GTSAC	2 cut(s)	661, 865
NsiI	ATGCAT	1 cut(s)	918
NspI	RCATGY	1 cut(s)	1238
PagI	TCATGA	2 cut(s)	1155, 1311
PciI	ACATGT	1 cut(s)	1234
PciSI	GCTCTTC	1 cut(s)	627
PcsI	WCGNNNNNNNCGW	1 cut(s)	845
PctI	GAATGC	2 cut(s)	523, 847
PfeI	GAWTC	6 cut(s)	161, 719, 829, 1070, 1076, 1325
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	8 cut(s)	113, 146, 149, 255, 1015, 1264, 1267, 1278
PleI	GAGTC	2 cut(s)	119, 1188
PpsI	GAGTC	2 cut(s)	119, 1188
PpuMI	RGGWCCY	3 cut(s)	291, 425, 547
PscI	ACATGT	1 cut(s)	1234
Psp5II	RGGWCCY	3 cut(s)	291, 425, 547
PspN4I	GGNNCC	4 cut(s)	115, 292, 293, 1251
PspPI	GGNCC	5 cut(s)	291, 425, 547, 797, 1097
PspPPI	RGGWCCY	3 cut(s)	291, 425, 547
PstI	CTGCAG	1 cut(s)	886
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	7 cut(s)	266, 303, 443, 460, 812, 838, 937
RsaNI	GTAC	7 cut(s)	265, 302, 442, 459, 811, 837, 936
RseI	CAYNNNNRTG	1 cut(s)	921
SapI	GCTCTTC	1 cut(s)	627
SaqAI	TTAA	4 cut(s)	435, 642, 672, 1368
SatI	GCNGC	8 cut(s)	112, 145, 148, 254, 1014, 1263, 1266, 1277
Sau3AI	GATC	3 cut(s)	276, 1152, 1308
Sau96I	GGNCC	5 cut(s)	291, 425, 547, 797, 1097
ScaI	AGTACT	2 cut(s)	443, 937
SchI	GAGTC	2 cut(s)	119, 1189
ScrFI	CCNGG	4 cut(s)	158, 287, 288, 788
SduI	GDGCHC	1 cut(s)	355
SfaNI	GCATC	1 cut(s)	903
SfcI	CTRYAG	1 cut(s)	882
SinI	GGWCC	5 cut(s)	291, 425, 547, 797, 1097
SmaI	CCCGGG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	921
Sse9I	AATT	9 cut(s)	183, 214, 225, 325, 334, 356, 474, 979, 1018
SsiI	CCGC	7 cut(s)	75, 111, 145, 148, 237, 253, 1046
SspMI	CTAG	5 cut(s)	240, 783, 933, 1110, 1256
StyD4I	CCNGG	4 cut(s)	156, 285, 286, 786
TaaI	ACNGT	2 cut(s)	121, 1087
TaqI	TCGA	7 cut(s)	105, 135, 339, 478, 717, 848, 1103
TasI	AATT	9 cut(s)	183, 214, 225, 325, 334, 356, 474, 979, 1018
TatI	WGTACW	3 cut(s)	441, 810, 935
TauI	GCSGC	4 cut(s)	114, 147, 150, 256
TfiI	GAWTC	6 cut(s)	161, 719, 829, 1070, 1076, 1325
Tru1I	TTAA	4 cut(s)	435, 642, 672, 1368
Tru9I	TTAA	4 cut(s)	435, 642, 672, 1368
TscAI	CASTG	2 cut(s)	823, 891
TseFI	GTSAC	2 cut(s)	661, 865
TseI	GCWGC	4 cut(s)	1013, 1262, 1265, 1276
Tsp45I	GTSAC	2 cut(s)	661, 865
TspDTI	ATGAA	3 cut(s)	350, 1005, 1172
TspGWI	ACGGA	2 cut(s)	1026, 1318
TspMI	CCCGGG	1 cut(s)	286
TspRI	CASTG	2 cut(s)	823, 891
VpaK11BI	GGWCC	5 cut(s)	291, 425, 547, 797, 1097
XapI	RAATTY	2 cut(s)	225, 979
XceI	RCATGY	1 cut(s)	1238
XmaI	CCCGGG	1 cut(s)	286
XspI	CTAG	5 cut(s)	240, 783, 933, 1110, 1256
ZrmI	AGTACT	2 cut(s)	443, 937
Zsp2I	ATGCAT	1 cut(s)	918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.