Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Reverse (-)

23296164 .. 23299242

Gene Structure 3079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0247900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGAAGTTGCAGTCTTTGAATTCGGGATACGAAATGCGAACACTCATTGCCAAACCCAATGGCTCCTCAATGCGCAAAACCCCAACAACTATCCAATCTTGCTCTCCAACTCAGGACCTTCGAGGCCAATCCGTCGCCATTATCGGATTGGGAAAATCTGGTAGAGCTGCGGCGAGGCTTGCTCTTGCCAGAGGTGCTGCTTCAGTTTTAGCATTTGACCACAACCCCACTTTGGGCCTCCTAGAGAAAGATCCCTTGTTTGAGGAGCATGGTGGTGATAATGGTGCATTGAGAACAATTTTGGGCCAATTTGATGGAGAGTTACTTAACAATGTGGACAGGGTGGTGGTGTCCCCTGGGGTCCCGCTACGAAAATATGGCCTTTCGTCTTTGTTGCAATCGGGAAAACAGGTGATGTCTGAGTTGGATTTCGCTGCCGAAATTCTCCCAAAAAGTATCAAGATCTTAGCAGTGACAGGGACTAATGGAAAATCAACTTTTGTCACTTTTGCTGGACAGAACCCCCTTCTAAAACCAAAGTTTAAGGTTGCTGTGGTGGAGGTTAGCAGTTACCAAATGGAAATTCCCAACAAGTACTTCTGCCCTTCTGTAGCTGTAGTGTTAAACCTTACACCTGATCATTTAGAAAGGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

218

Amino Acids

23.42

Weight (kDa)

9.39

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MurD-like_N	PF21799	44 - 139	3.5e-09	Mur ligase MurD-like, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	74
AciI	CCGC	2 cut(s)	170, 365
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	3 cut(s)	19, 441, 582
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	232, 233
AgsI	TTSAA	1 cut(s)	19
AjnI	CCWGG	1 cut(s)	355
AjuI	GAANNNNNNNTTGG	4 cut(s)	567, 581, 599, 613
AluBI	AGCT	2 cut(s)	167, 614
AluI	AGCT	2 cut(s)	167, 614
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	4 cut(s)	124, 235, 304, 379
ApeKI	GCWGC	3 cut(s)	167, 197, 434
ApoI	RAATTY	3 cut(s)	19, 441, 582
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	4 cut(s)	115, 235, 304, 361
AsuHPI	GGTGA	2 cut(s)	287, 424
AvaII	GGWCC	2 cut(s)	115, 361
BbvI	GCAGC	3 cut(s)	154, 184, 421
BccI	CCATC	1 cut(s)	308
BciT130I	CCWGG	1 cut(s)	357
BciVI	GTATCC	1 cut(s)	20
BclI	TGATCA	1 cut(s)	637
BfaI	CTAG	2 cut(s)	242, 655
BfmI	CTRYAG	2 cut(s)	609, 615
BfuI	GTATCC	1 cut(s)	20
BglII	AGATCT	1 cut(s)	462
BisI	GCNGC	4 cut(s)	168, 171, 198, 435
BlsI	GCNGC	4 cut(s)	169, 172, 199, 436
BmcAI	AGTACT	1 cut(s)	596
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	2 cut(s)	115, 361
BmgT120I	GGNCC	4 cut(s)	115, 235, 304, 361
BmiI	GGNNCC	3 cut(s)	64, 362, 363
BmrFI	CCNGG	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	166, 198
BsaJI	CCNNGG	2 cut(s)	355, 356
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 233
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	357
BseDI	CCNNGG	2 cut(s)	355, 356
BseLI	CCNNNNNNNGG	2 cut(s)	232, 233
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	2 cut(s)	125, 411
BseRI	GAGGAG	2 cut(s)	55, 278
BseXI	GCAGC	3 cut(s)	154, 184, 421
BshFI	GGCC	4 cut(s)	126, 237, 306, 381
BslFI	GGGAC	3 cut(s)	337, 347, 493
BslI	CCNNNNNNNGG	2 cut(s)	232, 233
BsmFI	GGGAC	3 cut(s)	337, 347, 493
BsnI	GGCC	4 cut(s)	126, 237, 306, 381
Bsp143I	GATC	3 cut(s)	250, 462, 637
BspACI	CCGC	2 cut(s)	170, 365
BspANI	GGCC	4 cut(s)	126, 237, 306, 381
BspCNI	CTCAG	2 cut(s)	124, 412
BspLI	GGNNCC	3 cut(s)	64, 362, 363
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	45
BssECI	CCNNGG	2 cut(s)	355, 356
BssMI	GATC	3 cut(s)	250, 462, 637
Bst2UI	CCWGG	1 cut(s)	357
BstC8I	GCNNGC	1 cut(s)	180
BstDEI	CTNAG	3 cut(s)	111, 420, 466
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	3 cut(s)	253, 465, 640
BstMBI	GATC	3 cut(s)	250, 462, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 194
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	2 cut(s)	609, 615
BstV1I	GCAGC	3 cut(s)	154, 184, 421
BstX2I	RGATCY	2 cut(s)	250, 462
BstXI	CCANNNNNNTGG	1 cut(s)	314
BstYI	RGATCY	2 cut(s)	250, 462
BsuI	GTATCC	1 cut(s)	20
BsuRI	GGCC	4 cut(s)	126, 237, 306, 381
BtsI	GCAGTG	1 cut(s)	477
BtsIMutI	CAGTG	1 cut(s)	477
Cac8I	GCNNGC	1 cut(s)	180
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	4 cut(s)	115, 235, 304, 361
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	1 cut(s)	269
CviJI	RGCY	8 cut(s)	63, 126, 167, 178, 237, 306, 381, 614
CviKI_1	RGCY	8 cut(s)	63, 126, 167, 178, 237, 306, 381, 614
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	3 cut(s)	111, 420, 466
DpnI	GATC	3 cut(s)	252, 464, 639
DpnII	GATC	3 cut(s)	250, 462, 637
Eco47I	GGWCC	2 cut(s)	115, 361
Eco57I	CTGAAG	1 cut(s)	186
EcoO109I	RGGNCCY	2 cut(s)	115, 361
EcoRI	GAATTC	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	272
FaiI	YATR	2 cut(s)	270, 378
FaqI	GGGAC	3 cut(s)	337, 347, 493
FatI	CATG	1 cut(s)	268
FauI	CCCGC	1 cut(s)	372
FbaI	TGATCA	1 cut(s)	637
Fnu4HI	GCNGC	4 cut(s)	168, 171, 198, 435
Fsp4HI	GCNGC	4 cut(s)	168, 171, 198, 435
FspBI	CTAG	2 cut(s)	242, 655
FspI	TGCGCA	1 cut(s)	74
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	168, 171, 198, 435
HaeIII	GGCC	4 cut(s)	126, 237, 306, 381
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	272
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HphI	GGTGA	2 cut(s)	287, 424
Hpy166II	GTNNAC	1 cut(s)	337
Hpy188I	TCNGA	2 cut(s)	146, 421
Hpy188III	TCNNGA	4 cut(s)	24, 113, 402, 460
Hpy8I	GTNNAC	1 cut(s)	337
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	3 cut(s)	128, 536, 615
HpyCH4V	TGCA	3 cut(s)	10, 287, 397
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 194
HpyF3I	CTNAG	3 cut(s)	111, 420, 466
Hsp92II	CATG	1 cut(s)	272
HspAI	GCGC	1 cut(s)	73
KflI	GGGWCCC	1 cut(s)	361
Ksp22I	TGATCA	1 cut(s)	637
Kzo9I	GATC	3 cut(s)	250, 462, 637
LmnI	GCTCC	2 cut(s)	68, 265
Lsp1109I	GCAGC	3 cut(s)	154, 184, 421
MaeI	CTAG	2 cut(s)	242, 655
MaeIII	GTNAC	4 cut(s)	321, 472, 502, 569
MalI	GATC	3 cut(s)	252, 464, 639
MboI	GATC	3 cut(s)	250, 462, 637
MflI	RGATCY	2 cut(s)	250, 462
MluCI	AATT	5 cut(s)	19, 297, 308, 441, 582
MmeI	TCCRAC	2 cut(s)	131, 405
MnlI	CCTC	7 cut(s)	76, 116, 168, 185, 248, 256, 553
MseI	TTAA	3 cut(s)	327, 543, 623
MslI	CAYNNNNRTG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	179, 194
NdeII	GATC	3 cut(s)	250, 462, 637
NlaIII	CATG	1 cut(s)	272
NlaIV	GGNNCC	3 cut(s)	64, 362, 363
NmuCI	GTSAC	2 cut(s)	472, 502
NsbI	TGCGCA	1 cut(s)	74
PasI	CCCWGGG	1 cut(s)	356
PkrI	GCNGC	4 cut(s)	169, 172, 199, 436
PpuMI	RGGWCCY	2 cut(s)	115, 361
Psp5II	RGGWCCY	2 cut(s)	115, 361
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	3 cut(s)	64, 362, 363
PspPI	GGNCC	4 cut(s)	115, 235, 304, 361
PspPPI	RGGWCCY	2 cut(s)	115, 361
PsuI	RGATCY	2 cut(s)	250, 462
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	273
SaqAI	TTAA	3 cut(s)	327, 543, 623
SatI	GCNGC	4 cut(s)	168, 171, 198, 435
Sau3AI	GATC	3 cut(s)	250, 462, 637
Sau96I	GGNCC	4 cut(s)	115, 235, 304, 361
ScaI	AGTACT	1 cut(s)	596
ScrFI	CCNGG	1 cut(s)	357
SetI	ASST	9 cut(s)	120, 169, 196, 414, 549, 564, 616, 630, 637
SfcI	CTRYAG	2 cut(s)	609, 615
SinI	GGWCC	2 cut(s)	115, 361
SmiMI	CAYNNNNRTG	1 cut(s)	273
Sse9I	AATT	5 cut(s)	19, 297, 308, 441, 582
SsiI	CCGC	2 cut(s)	170, 365
SspMI	CTAG	2 cut(s)	242, 655
StyD4I	CCNGG	1 cut(s)	355
TaqI	TCGA	1 cut(s)	121
TasI	AATT	5 cut(s)	19, 297, 308, 441, 582
TatI	WGTACW	1 cut(s)	594
TauI	GCSGC	1 cut(s)	173
Tru1I	TTAA	3 cut(s)	327, 543, 623
Tru9I	TTAA	3 cut(s)	327, 543, 623
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	2 cut(s)	472, 502
TseI	GCWGC	3 cut(s)	167, 197, 434
Tsp45I	GTSAC	2 cut(s)	472, 502
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	121
TspRI	CASTG	1 cut(s)	477
VpaK11BI	GGWCC	2 cut(s)	115, 361
XapI	RAATTY	3 cut(s)	19, 441, 582
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	242, 655
ZrmI	AGTACT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.