Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000696

Physical Location & Seq

Genomic Coordinates Forward (+)

22730843 .. 22733120

Gene Structure 2278 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0220800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTTTTGCGGCACAGGTATATCGGGGTCTTGATGTTGGATCGGCAAAGCCTTCTCCAGGTGATAGAAAGGAAGTACCACATCATCTGGTTGACATATTGCACCCGTCTGAAGACTACTCCGTTGGACAATTTTATGACGATGCAAGGCAAGCTACAAGGTGTATTCTTGATAATGGGCGTGTTCCCATAGTTACTGGTGGCACTGGATTGTACTTGCGATGGTTAATATATGGAAAACCAGATGTTCGCAAAGCCTCAAAAGAGATCGCATCTGAAGTGTCTTCTGAGTTGGCAGATTTAGAAAGAAATGGACACTGGGATGCAGCTGTGCAGTTGGTGATCAAAGCAGGTGACCCTAAGGCTCAATTTTTGGCTGCTAATGATTGGTACCGATTAAGACGCAGCCTGGAGATCATCAAGTCTAGTGGATCACCTCCATCTGCCTTCGAAGTTCCGTATGATTCTTTCCGCAAAGAATGTGATTCTAGTGTAGCAGACACTAATGACATTAGTTCCTGTGCTGATGTTGTGGAGGAAGTTAAATCAAAGGAATTGGACTATGACTTCATTTGCTTTTTCCTCTCAAACCAAAGGGTTGATCTATACAGATCAATTGATTGGCGATGTGAAGATATGGTGTCAGGAACTGATGGTATATTGTCTGAGGCCAGATGGCTTCTTGATGCGGGTCTTATTCCAAATTCCAATTCAGCAACCAGAGCAATTGGTTACAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

246

Amino Acids

27.4

Weight (kDa)

5.01

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
IPPT	PF01715	6 - 246	9.1e-48	IPP transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000696)

Species	Orthologous Gene IDs
rosa_rugosa	Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Species

Orthologous Gene IDs

rosa_rugosa

Rorug01G0000300.1 Rorug01G0032600 Rorug01G0105700 Rorug01G0105900 Rorug01G0125500 Rorug01G0135300.1 Rorug01G0137600.1 Rorug01G0152300.1 Rorug01G0195600 Rorug01G0217100 Rorug01G0290000 Rorug01G0297100 Rorug01G0447500.1 Rorug01G0451400 Rorug02G0189000 Rorug02G0189900 Rorug02G0336700 Rorug02G0338800 Rorug02G0339300 Rorug02G0474300 Rorug02G0529100 Rorug03G0247900 Rorug03G0248000 Rorug03G0273100 Rorug03G0278100 Rorug03G0278300 Rorug03G0327500 Rorug03G0333900 Rorug03G0333900 Rorug03G0342800 Rorug04G0071700 Rorug04G0090300 Rorug04G0101700 Rorug04G0259500 Rorug04G0259600 Rorug04G0260400.1 Rorug04G0417900 Rorug04G0417900 Rorug04G0443700 Rorug05G0092800 Rorug05G0153100 Rorug05G0156400 Rorug05G0157200 Rorug05G0157500 Rorug05G0190700 Rorug05G0216400 Rorug05G0216600 Rorug05G0220800 Rorug05G0221000 Rorug05G0227500 Rorug05G0234300 Rorug05G0274000 Rorug05G0317400 Rorug05G0318900 Rorug05G0319000 Rorug05G0360100 Rorug05G0360600 Rorug05G0369400 Rorug05G0498900 Rorug05G0526500 Rorug05G0527200.1 Rorug05G0560300 Rorug05G0567800 Rorug05G0567900 Rorug06G0051000.1 Rorug06G0063600 Rorug06G0466600 Rorug07G0187300.1 Rorug07G0190200 Rorug07G0190200 Rorug07G0190300 Rorug07G0190400.1 Rorug07G0219000 Rorug07G0305100 Rorug07G0321000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	341
Acc36I	ACCTGC	1 cut(s)	341
Acc65I	GGTACC	1 cut(s)	390
AccB1I	GGYRCC	1 cut(s)	390
AciI	CCGC	3 cut(s)	11, 472, 689
AclWI	GGATC	2 cut(s)	49, 439
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	2 cut(s)	132, 297
AfaI	GTAC	3 cut(s)	78, 215, 392
AfiI	CCNNNNNNNGG	1 cut(s)	59
AjnI	CCWGG	2 cut(s)	58, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AluBI	AGCT	2 cut(s)	155, 329
AluI	AGCT	2 cut(s)	155, 329
AlwI	GGATC	2 cut(s)	49, 439
AlwNI	CAGNNNCTG	1 cut(s)	650
AoxI	GGCC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	326, 377, 405
ApoI	RAATTY	1 cut(s)	703
Asp718I	GGTACC	1 cut(s)	390
AsuHPI	GGTGA	4 cut(s)	74, 352, 365, 426
AsuII	TTCGAA	1 cut(s)	450
AxyI	CCTNAGG	1 cut(s)	360
BanI	GGYRCC	1 cut(s)	390
BbsI	GAAGAC	2 cut(s)	120, 276
BbvI	GCAGC	3 cut(s)	338, 364, 417
BccI	CCATC	4 cut(s)	216, 448, 647, 669
BciT130I	CCWGG	2 cut(s)	60, 410
BclI	TGATCA	1 cut(s)	342
BfaI	CTAG	2 cut(s)	426, 489
BfuAI	ACCTGC	1 cut(s)	341
BisI	GCNGC	4 cut(s)	12, 327, 378, 406
BlsI	GCNGC	4 cut(s)	13, 328, 379, 407
Bme1390I	CCNGG	2 cut(s)	60, 410
BmiI	GGNNCC	1 cut(s)	392
BmrFI	CCNGG	2 cut(s)	60, 410
BmrI	ACTGGG	1 cut(s)	328
BmsI	GCATC	4 cut(s)	133, 281, 313, 676
BmuI	ACTGGG	1 cut(s)	328
BpiI	GAAGAC	2 cut(s)	120, 276
BpmI	CTGGAG	2 cut(s)	42, 431
Bpu14I	TTCGAA	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	1 cut(s)	59
Bse1I	ACTGG	3 cut(s)	202, 211, 323
Bse21I	CCTNAGG	1 cut(s)	360
BseBI	CCWGG	2 cut(s)	60, 410
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	279, 657
BseNI	ACTGG	3 cut(s)	202, 211, 323
BseXI	GCAGC	3 cut(s)	338, 364, 417
BsgI	GTGCAG	1 cut(s)	353
BshFI	GGCC	1 cut(s)	671
BshNI	GGYRCC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	59
BsnI	GGCC	1 cut(s)	671
Bsp119I	TTCGAA	1 cut(s)	450
Bsp143I	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
BspACI	CCGC	3 cut(s)	11, 472, 689
BspANI	GGCC	1 cut(s)	671
BspCNI	CTCAG	2 cut(s)	280, 658
BspLI	GGNNCC	1 cut(s)	392
BspMI	ACCTGC	1 cut(s)	341
BspPI	GGATC	2 cut(s)	49, 439
BspT104I	TTCGAA	1 cut(s)	450
BspT107I	GGYRCC	1 cut(s)	390
BsrI	ACTGG	3 cut(s)	202, 211, 323
BssMI	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
Bst2UI	CCWGG	2 cut(s)	60, 410
BstBI	TTCGAA	1 cut(s)	450
BstC8I	GCNNGC	1 cut(s)	153
BstDEI	CTNAG	3 cut(s)	288, 360, 666
BstEII	GGTNACC	1 cut(s)	353
BstENI	CCTNNNNNAGG	1 cut(s)	57
BstF5I	GGATG	1 cut(s)	328
BstKTI	GATC	7 cut(s)	44, 270, 345, 417, 434, 604, 614
BstMBI	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 152, 722
BstNI	CCWGG	2 cut(s)	60, 410
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	2 cut(s)	58, 408
BstV1I	GCAGC	3 cut(s)	338, 364, 417
BstV2I	GAAGAC	2 cut(s)	120, 276
Bsu36I	CCTNAGG	1 cut(s)	360
BsuRI	GGCC	1 cut(s)	671
BtgZI	GCGATG	2 cut(s)	235, 640
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	2 cut(s)	204, 316
BveI	ACCTGC	1 cut(s)	341
Cac8I	GCNNGC	1 cut(s)	153
CaiI	CAGNNNCTG	1 cut(s)	650
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	77, 214, 391
CspCI	CAANNNNNGTGG	2 cut(s)	409, 444
CviQI	GTAC	3 cut(s)	77, 214, 391
DdeI	CTNAG	3 cut(s)	288, 360, 666
DpnI	GATC	7 cut(s)	43, 269, 344, 416, 433, 603, 613
DpnII	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
Eco57I	CTGAAG	2 cut(s)	132, 297
Eco81I	CCTNAGG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	353
EcoNI	CCTNNNNNAGG	1 cut(s)	57
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	58, 408
FauI	CCCGC	1 cut(s)	682
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	4 cut(s)	12, 327, 378, 406
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	4 cut(s)	12, 327, 378, 406
FspBI	CTAG	2 cut(s)	426, 489
GluI	GCNGC	4 cut(s)	12, 327, 378, 406
GsuI	CTGGAG	2 cut(s)	42, 431
HaeIII	GGCC	1 cut(s)	671
HgaI	GACGC	1 cut(s)	411
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	464, 485
HphI	GGTGA	4 cut(s)	74, 352, 365, 426
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	4 cut(s)	112, 277, 289, 667
Hpy188III	TCNNGA	4 cut(s)	32, 170, 645, 683
Hpy8I	GTNNAC	1 cut(s)	94
HpyAV	CCTTC	2 cut(s)	63, 457
HpyCH4V	TGCA	4 cut(s)	103, 146, 326, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 152, 722
HpyF3I	CTNAG	3 cut(s)	288, 360, 666
KpnI	GGTACC	1 cut(s)	394
Ksp22I	TGATCA	1 cut(s)	342
Kzo9I	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
Lsp1109I	GCAGC	3 cut(s)	338, 364, 417
LweI	GCATC	4 cut(s)	133, 281, 313, 676
MaeI	CTAG	2 cut(s)	426, 489
MaeIII	GTNAC	3 cut(s)	193, 353, 731
MalI	GATC	7 cut(s)	43, 269, 344, 416, 433, 603, 613
MboI	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
MboII	GAAGA	3 cut(s)	125, 276, 644
MfeI	CAATTG	2 cut(s)	615, 726
MluCI	AATT	7 cut(s)	131, 368, 554, 615, 703, 709, 726
MmeI	TCCRAC	2 cut(s)	19, 106
MnlI	CCTC	5 cut(s)	268, 447, 529, 593, 661
MseI	TTAA	3 cut(s)	227, 398, 543
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	329
MspR9I	CCNGG	2 cut(s)	60, 410
MunI	CAATTG	2 cut(s)	615, 726
MvaI	CCWGG	2 cut(s)	60, 410
MwoI	GCNNNNNNNGC	3 cut(s)	11, 152, 722
NdeII	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
NlaIV	GGNNCC	1 cut(s)	392
NmuCI	GTSAC	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	450
PaqCI	CACCTGC	1 cut(s)	341
PfeI	GAWTC	2 cut(s)	464, 485
PkrI	GCNGC	4 cut(s)	13, 328, 379, 407
Psp6I	CCWGG	2 cut(s)	58, 408
PspEI	GGTNACC	1 cut(s)	353
PspGI	CCWGG	2 cut(s)	58, 408
PspN4I	GGNNCC	1 cut(s)	392
PstNI	CAGNNNCTG	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	329
RsaI	GTAC	3 cut(s)	78, 215, 392
RsaNI	GTAC	3 cut(s)	77, 214, 391
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	227, 398, 543
SatI	GCNGC	4 cut(s)	12, 327, 378, 406
Sau3AI	GATC	7 cut(s)	41, 267, 342, 414, 431, 601, 611
ScrFI	CCNGG	2 cut(s)	60, 410
SetI	ASST	7 cut(s)	21, 64, 157, 164, 331, 355, 439
SfaNI	GCATC	4 cut(s)	133, 281, 313, 676
SfuI	TTCGAA	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	321
Sse9I	AATT	7 cut(s)	131, 368, 554, 615, 703, 709, 726
SsiI	CCGC	3 cut(s)	11, 472, 689
SspMI	CTAG	2 cut(s)	426, 489
StyD4I	CCNGG	2 cut(s)	58, 408
TaqI	TCGA	1 cut(s)	450
TasI	AATT	7 cut(s)	131, 368, 554, 615, 703, 709, 726
TatI	WGTACW	1 cut(s)	213
TauI	GCSGC	1 cut(s)	14
TfiI	GAWTC	2 cut(s)	464, 485
Tru1I	TTAA	3 cut(s)	227, 398, 543
Tru9I	TTAA	3 cut(s)	227, 398, 543
TscAI	CASTG	2 cut(s)	211, 323
TseFI	GTSAC	1 cut(s)	353
TseI	GCWGC	3 cut(s)	326, 377, 405
Tsp45I	GTSAC	1 cut(s)	353
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	2 cut(s)	112, 447
TspRI	CASTG	2 cut(s)	211, 323
XagI	CCTNNNNNAGG	1 cut(s)	57
XapI	RAATTY	1 cut(s)	703
XspI	CTAG	2 cut(s)	426, 489

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.