Rorug04G0101700

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000091
Physical Location & Seq
Forward (+)
15858330 .. 15864144
5815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0101700.1

Sequence Viewer

Length: 2412 bp
ATGATCGGTTCCATATTACCCTTGCCAGCTCCTCCTACTGATGGAAACCTGGGGCCTTTACCGCTAGCCCAGGTCACTGAAGTGAAGAATGAAGAGAATGAATTGAACGAGGAGCTGAACAGAGCCAACTCGGTGCCTGTCTCAGTTGCTACGCATACTAGGACGATTGGTATCATACATCCTCCTCCCGATATCAGAAACATTGTTGACAAAACTTCCCAGTTTGTCGCAAAGAATGGACCAGAATTTGAGAAGAGGATTATAGCTAGTAATAACGGAAATCCAAAGTTTAACTTTTTGAGTTCCTCAGATCCGTACCATGCCTATTATCAGCACCGGTTGTCTGAATTTCGTGCCCAGGCTCAGTCTTCTGGCCAGCAACCTTCTTTGGAGCCTGATGATTCTGCTGCACCTGAATCAGGCCTGCCAGCTCCAGCTGCTGATGGTGAAGCAGAAACAACTAAGCCTGATCCCTCTGCCCAGTTTAGACCGGTACGAAAAGTTCTTGAACCACCAGAAGCCGAGCAGTATACTGTTAGGCTTCCAGAAGGGATTACTGGAGAAGAATTGGATATTATTAAGCTCACAGCCCAGTTTGTTGCTCGAAATGGGAAATCATTTTTGACAGGATTGACAAGCAGAGAGATCAATAACCCCCAGTTCCATTTTCTGAAGCCTACCCATAGTATGTTCATGTTTTTCACTTCTCTGGCCGATGCATATTCGAAGGTCTTGATGCCTCCAAAAGGTTTGACAGAGAAGCTTAAGAAAGGTGTTGCAGACATGACAACTGTGCTTGAACGCTGTGTGCATCGGCTGGAGTGGGAGCGATCTCAAGAGCAGGCAAGGCAGAAGGCTGAAGATGAGATAGAGCAGGAAAGGATACAAATGGCTATGATTGATTGGCATGATTTTGTTGTGGTTGAAACAATAGACTTTGCTGATGATGAGGATGAGGATTTACCTCCTCCAATGACCCTTGAGGAGGTTATAAGAAGAAGCAAGGTTACAGATATGGAAGAAGATATTATTGAGCCTGGAAAGGAGATGGAAATGGAAATGGATGAAGAAGAAATGCAGCTTGTTGAAGAGGGCATGAGGCAAGCAAGACTTGAAGAGAGCAATGAACAGAAGAATGAGAATAAGGTAACAGATGATCCTGAACCCCCAATGAGAATTGTGAAGAACTGGAAGAGACCTGAGGAGAGGATTCCTGCTGAAAGAGATCCAACAAAGGTTGTCATTTCCCCGATTACTGGGGAGCTTATCCCTATCAATGAGATGTCTGAACATATGAGAATTTCGCTCATTGATCCAAAATACAAAGAGCAAAAAGAAAGGATGTTTGCGAAGATTAGGGAGACTACTCTTGCTCAGGATGATGAAATCTCAAGGAACATTGTGGGCCTTGCACGAACCCGTCCGGATATTTTTGGTACTACAGAGGAAGAAGTTTCTAATGCTGTCAAGGCTGAGATCGAGAAAAAGAAAGATGAGCAACCAAAGCAGGTCATATGGGATGGTCACACTGGAAGCATTGGCCGTACAGCAAATCAGGCCATGTCACAGAATATCAATGGAGAGGATCAGAACGATGTTAACAATCTTCCTGGTCCAGCAGCGCCTCCTCCAAGACCTGGTGTGCCTTCAATTCCTCGTCCTCTTCCCCCACCACCTGGTCTTGCCTTGAATCTTCCTCGTGTTCCTCCAAACACAGTTCAGTATTCTGCTCCATCTAGTGGTGGCCTCCCAGTACCTCAACTGAGGCCGCCAGTCCAATATTCATCAGTTCGACCACCTGGACCTCCAATGCCCATGAGTTCTGGACAGCAGTCACTTTTGGTGAATCGACCACCACCTATGCATCCATCAATGTCTATGAATGCTCCTAGTAATCCGGTACCTCCTCCACCTGGTTCTCAGTTTACACCTATGCAAGCTCCCCGGCCTTATATGCAAATGATGCCTCCACCACCTTCAATGCAAATGATGCCTCCACCACCTATGCCTCATGGAATGATGCCTCCGCCACCTCCACCTGAGGAAGCTCCTCCACCGCTCCCAGAGGAACCTGAGCCCAAGCGGCAGAAGCTTGATGACTCCATGCTTATTGCAGAAGATAAATTTCTGGCACAGCATCCGGGGCCTCTTCGTATCACCGTATCTGTTCCCAATGTTGATGAAGGCAATCTCAAAGGACAACTTTTGGAGATCACAGTTCAGTCTTTATCTGAAACTGTTGGAAGTCTGAAAGAGAAAATTTCTGGGGAGATCCAGCTTCCGGCAAACAAACAGAAATTGAGTGGAAAACCTGGCTTTCTCAAGGACAATTTGTCTCTTGCATATTACAATGTTGGAGCAGGAGAAACGCTTGCTCTTTCATTGAGAGAACGAGGTGGTAGAAAGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

803

Amino Acids

89.21

Weight (kDa)

5.05

Isoelectric Point (pI)

59.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Surp PF01805 66 - 117 1.1e-21 Surp module
Surp PF01805 190 - 241 1.9e-17 Surp module
PRP21_like_P PF12230 260 - 472 9.4e-57 Pre-mRNA splicing factor PRP21 like protein
ubiquitin PF00240 732 - 798 7e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
Acc36I ACCTGC 1 cut(s) 1498
Acc65I GGTACC 1 cut(s) 1900
AccB1I GGYRCC 2 cut(s) 133, 1900
AccB7I CCANNNNNTGG 3 cut(s) 1637, 1676, 1739
AccBSI CCGCTC 1 cut(s) 2059
AccI GTMKAC 1 cut(s) 530
AccIII TCCGGA 1 cut(s) 1423
AciI CCGC 5 cut(s) 62, 1769, 2027, 2057, 2083
AclWI GGATC 7 cut(s) 305, 464, 1151, 1220, 1307, 1593, 2266
AcoI YGGCCR 3 cut(s) 373, 711, 1540
AcsI RAATTY 5 cut(s) 245, 347, 1299, 2123, 2259
AcuI CTGAAG 3 cut(s) 99, 692, 879
AfaI GTAC 6 cut(s) 317, 495, 1438, 1546, 1755, 1902
AflII CTTAAG 1 cut(s) 764
AgeI ACCGGT 2 cut(s) 336, 490
AgsI TTSAA 9 cut(s) 106, 509, 800, 926, 1088, 1115, 1650, 1690, 1980
AhdI GACNNNNNGTC 1 cut(s) 2332
AleI CACNNNNGTG 1 cut(s) 80
Alw26I GTCTC 4 cut(s) 145, 1189, 1355, 2340
AlwI GGATC 7 cut(s) 305, 464, 1151, 1220, 1307, 1593, 2266
AlwNI CAGNNNCTG 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 1423
ApeKI GCWGC 4 cut(s) 407, 437, 1078, 1619
ApoI RAATTY 5 cut(s) 245, 347, 1299, 2123, 2259
AsiGI ACCGGT 2 cut(s) 336, 490
Asp718I GGTACC 1 cut(s) 1900
AspLEI GCGC 1 cut(s) 1624
AspS9I GGNCC 6 cut(s) 53, 239, 1405, 1613, 1802, 2144
AsuC2I CCSGG 2 cut(s) 1945, 2142
AsuHPI GGTGA 3 cut(s) 458, 1855, 2149
AsuII TTCGAA 1 cut(s) 725
AsuNHI GCTAGC 1 cut(s) 64
AvaII GGWCC 3 cut(s) 239, 1613, 1802
AxyI CCTNAGG 2 cut(s) 1200, 2040
BaeGI GKGCMC 1 cut(s) 358
BalI TGGCCA 1 cut(s) 375
BanI GGYRCC 2 cut(s) 133, 1900
BanII GRGCYC 1 cut(s) 2079
BarI GAAGNNNNNNTAC 2 cut(s) 991, 1023
BauI CACGAG 1 cut(s) 1698
BbsI GAAGAC 1 cut(s) 360
BbvI GCAGC 4 cut(s) 394, 424, 1090, 1631
BccI CCATC 6 cut(s) 35, 437, 1042, 1514, 1741, 1876
BceAI ACGGC 1 cut(s) 1527
BciVI GTATCC 1 cut(s) 876
BcnI CCSGG 2 cut(s) 1945, 2142
BcoDI GTCTC 4 cut(s) 145, 1189, 1355, 2340
BfaI CTAG 5 cut(s) 65, 159, 267, 1737, 1890
BfmI CTRYAG 1 cut(s) 1440
BfoI RGCGCY 1 cut(s) 1625
BfrI CTTAAG 1 cut(s) 764
BfuAI ACCTGC 1 cut(s) 1498
BfuI GTATCC 1 cut(s) 876
BglI GCCNNNNNGGC 1 cut(s) 2083
BisI GCNGC 6 cut(s) 408, 438, 1079, 1620, 1769, 2084
BlsI GCNGC 6 cut(s) 409, 439, 1080, 1621, 1770, 2085
Bme18I GGWCC 3 cut(s) 239, 1613, 1802
BmeRI GACNNNNNGTC 1 cut(s) 2332
BmgT120I GGNCC 6 cut(s) 53, 239, 1405, 1613, 1802, 2144
BmiI GGNNCC 7 cut(s) 10, 54, 135, 393, 1902, 2070, 2145
BmrI ACTGGG 6 cut(s) 214, 475, 586, 652, 1266, 1745
BmsI GCATC 8 cut(s) 706, 726, 820, 1873, 1953, 1980, 2010, 2146
BmtI GCTAGC 1 cut(s) 68
BmuI ACTGGG 6 cut(s) 214, 475, 586, 652, 1266, 1745
BoxI GACNNNNGTC 1 cut(s) 1831
BpiI GAAGAC 1 cut(s) 360
BpmI CTGGAG 3 cut(s) 417, 579, 839
Bpu10I CCTNAGC 2 cut(s) 1374, 2073
Bpu14I TTCGAA 1 cut(s) 725
BpuEI CTTGAG 4 cut(s) 819, 1001, 1375, 2306
BpuMI CCSGG 2 cut(s) 1945, 2142
BsaBI GATNNNNATC 1 cut(s) 170
BsaI GGTCTC 1 cut(s) 1189
BsaJI CCNNGG 5 cut(s) 49, 69, 357, 1943, 2141
BsaWI WCCGGW 4 cut(s) 336, 490, 1423, 1897
Bse118I RCCGGY 2 cut(s) 336, 490
Bse21I CCTNAGG 2 cut(s) 1200, 2040
Bse3DI GCAATG 1 cut(s) 1129
Bse8I GATNNNNATC 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 1423
BseDI CCNNGG 5 cut(s) 49, 69, 357, 1943, 2141
BseGI GGATG 8 cut(s) 178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BseJI GATNNNNATC 1 cut(s) 170
BseMI GCAATG 1 cut(s) 1129
BseRI GAGGAG 9 cut(s) 21, 125, 174, 957, 998, 1217, 1617, 1896, 2040
BseSI GKGCMC 1 cut(s) 358
BseXI GCAGC 4 cut(s) 394, 424, 1090, 1631
BsgI GTGCAG 1 cut(s) 393
BshNI GGYRCC 2 cut(s) 133, 1900
BshTI ACCGGT 2 cut(s) 336, 490
BsiSI CCGG 7 cut(s) 337, 491, 1424, 1898, 1945, 2141, 2282
BsmAI GTCTC 4 cut(s) 145, 1189, 1355, 2340
BsmI GAATGC 1 cut(s) 1888
Bso31I GGTCTC 1 cut(s) 1189
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 2 cut(s) 358, 2079
Bsp13I TCCGGA 1 cut(s) 1423
BspACI CCGC 5 cut(s) 62, 1769, 2027, 2057, 2083
BspEI TCCGGA 1 cut(s) 1423
BspLI GGNNCC 7 cut(s) 10, 54, 135, 393, 1902, 2070, 2145
BspMI ACCTGC 1 cut(s) 1498
BspOI GCTAGC 1 cut(s) 68
BspPI GGATC 7 cut(s) 305, 464, 1151, 1220, 1307, 1593, 2266
BspT104I TTCGAA 1 cut(s) 725
BspT107I GGYRCC 2 cut(s) 133, 1900
BspTI CTTAAG 1 cut(s) 764
BspTNI GGTCTC 1 cut(s) 1189
BsrBI CCGCTC 1 cut(s) 2059
BsrDI GCAATG 1 cut(s) 1129
BsrFI RCCGGY 2 cut(s) 336, 490
BssAI RCCGGY 2 cut(s) 336, 490
BssECI CCNNGG 5 cut(s) 49, 69, 357, 1943, 2141
BssNAI GTATAC 1 cut(s) 531
BssSI CACGAG 1 cut(s) 1698
Bst1107I GTATAC 1 cut(s) 531
Bst2BI CACGAG 1 cut(s) 1698
Bst4CI ACNGT 6 cut(s) 535, 793, 1717, 2161, 2218, 2239
Bst6I CTCTTC 7 cut(s) 87, 248, 1083, 1110, 1187, 1668, 2154
BstAFI CTTAAG 1 cut(s) 764
BstAPI GCANNNNNTGC 2 cut(s) 1963, 1990
BstBI TTCGAA 1 cut(s) 725
BstC8I GCNNGC 9 cut(s) 27, 66, 377, 425, 429, 843, 1104, 1938, 2373
BstENI CCTNNNNNAGG 3 cut(s) 417, 744, 983
BstF5I GGATG 8 cut(s) 178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BstH2I RGCGCY 1 cut(s) 1625
BstHHI GCGC 1 cut(s) 1624
BstMAI GTCTC 4 cut(s) 145, 1189, 1355, 2340
BstPAI GACNNNNGTC 1 cut(s) 1831
BstSFI CTRYAG 1 cut(s) 1440
BstSLI GKGCMC 1 cut(s) 358
BstV1I GCAGC 4 cut(s) 394, 424, 1090, 1631
BstV2I GAAGAC 1 cut(s) 360
BstX2I RGATCY 3 cut(s) 310, 1225, 2271
BstYI RGATCY 3 cut(s) 310, 1225, 2271
BstZ17I GTATAC 1 cut(s) 531
Bsu36I CCTNAGG 2 cut(s) 1200, 2040
BsuI GTATCC 1 cut(s) 876
BtsCI GGATG 8 cut(s) 178, 958, 1069, 1347, 1384, 1525, 1864, 2137
BtsIMutI CAGTG 2 cut(s) 75, 1527
BveI ACCTGC 1 cut(s) 1498
Cac8I GCNNGC 9 cut(s) 27, 66, 377, 425, 429, 843, 1104, 1938, 2373
CaiI CAGNNNCTG 1 cut(s) 440
CfoI GCGC 1 cut(s) 1624
Cfr10I RCCGGY 2 cut(s) 336, 490
Cfr13I GGNCC 6 cut(s) 53, 239, 1405, 1613, 1802, 2144
CsiI ACCWGGT 3 cut(s) 1636, 1675, 1912
Csp6I GTAC 6 cut(s) 316, 494, 1437, 1545, 1754, 1901
CspAI ACCGGT 2 cut(s) 336, 490
CviAII CATG 9 cut(s) 320, 694, 784, 908, 1096, 1561, 1816, 2012, 2104
CviQI GTAC 6 cut(s) 316, 494, 1437, 1545, 1754, 1901
DriI GACNNNNNGTC 1 cut(s) 2332
EaeI YGGCCR 3 cut(s) 373, 711, 1540
Eam1104I CTCTTC 7 cut(s) 87, 248, 1083, 1110, 1187, 1668, 2154
Eam1105I GACNNNNNGTC 1 cut(s) 2332
EarI CTCTTC 7 cut(s) 87, 248, 1083, 1110, 1187, 1668, 2154
EciI GGCGGA 1 cut(s) 2016
Eco147I AGGCCT 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 2079
Eco31I GGTCTC 1 cut(s) 1189
Eco32I GATATC 1 cut(s) 193
Eco47I GGWCC 3 cut(s) 239, 1613, 1802
Eco57I CTGAAG 3 cut(s) 99, 692, 879
Eco81I CCTNAGG 2 cut(s) 1200, 2040
EcoNI CCTNNNNNAGG 3 cut(s) 417, 744, 983
EcoO109I RGGNCCY 2 cut(s) 53, 2144
EcoRV GATATC 1 cut(s) 193
EcoT22I ATGCAT 2 cut(s) 721, 1866
EcoT38I GRGCYC 1 cut(s) 2079
FaeI CATG 9 cut(s) 323, 697, 787, 911, 1099, 1564, 1819, 2015, 2107
FalI AAGNNNNNCTT 6 cut(s) 278, 310, 1095, 1127, 2187, 2219
FatI CATG 9 cut(s) 319, 693, 783, 907, 1095, 1560, 1815, 2011, 2103
FauNDI CATATG 2 cut(s) 1293, 1514
FblI GTMKAC 1 cut(s) 530
Fnu4HI GCNGC 6 cut(s) 408, 438, 1079, 1620, 1769, 2084
FokI GGATG 8 cut(s) 165, 965, 1076, 1354, 1391, 1532, 1851, 2124
FriOI GRGCYC 1 cut(s) 2079
Fsp4HI GCNGC 6 cut(s) 408, 438, 1079, 1620, 1769, 2084
FspBI CTAG 5 cut(s) 65, 159, 267, 1737, 1890
GlaI GCGC 1 cut(s) 1623
GluI GCNGC 6 cut(s) 408, 438, 1079, 1620, 1769, 2084
GsuI CTGGAG 3 cut(s) 417, 579, 839
HaeII RGCGCY 1 cut(s) 1625
HapII CCGG 7 cut(s) 337, 491, 1424, 1898, 1945, 2141, 2282
HhaI GCGC 1 cut(s) 1624
Hin1II CATG 9 cut(s) 323, 697, 787, 911, 1099, 1564, 1819, 2015, 2107
Hin6I GCGC 1 cut(s) 1622
HinP1I GCGC 1 cut(s) 1622
HincII GTYRAC 2 cut(s) 208, 1600
HindII GTYRAC 2 cut(s) 208, 1600
HindIII AAGCTT 2 cut(s) 761, 2090
HinfI GANTC 6 cut(s) 401, 416, 1210, 1690, 1846, 2099
HpaI GTTAAC 1 cut(s) 1600
HpaII CCGG 7 cut(s) 337, 491, 1424, 1898, 1945, 2141, 2282
HphI GGTGA 3 cut(s) 458, 1855, 2149
Hpy166II GTNNAC 4 cut(s) 208, 531, 1600, 1926
Hpy188I TCNGA 8 cut(s) 197, 310, 346, 672, 1288, 1590, 2233, 2250
Hpy8I GTNNAC 4 cut(s) 208, 531, 1600, 1926
HpyAV CCTTC 7 cut(s) 393, 542, 721, 847, 1656, 1986, 2177
HpyCH4III ACNGT 6 cut(s) 535, 793, 1717, 2161, 2218, 2239
Hsp92II CATG 9 cut(s) 323, 697, 787, 911, 1099, 1564, 1819, 2015, 2107
HspAI GCGC 1 cut(s) 1622
Kpn2I TCCGGA 1 cut(s) 1423
KpnI GGTACC 1 cut(s) 1904
KspAI GTTAAC 1 cut(s) 1600
Lsp1109I GCAGC 4 cut(s) 394, 424, 1090, 1631
LweI GCATC 8 cut(s) 706, 726, 820, 1873, 1953, 1980, 2010, 2146
MabI ACCWGGT 3 cut(s) 1636, 1675, 1912
MaeI CTAG 5 cut(s) 65, 159, 267, 1737, 1890
MaeIII GTNAC 6 cut(s) 73, 1006, 1147, 1523, 1563, 1833
MbiI CCGCTC 1 cut(s) 2059
MflI RGATCY 3 cut(s) 310, 1225, 2271
MhlI GDGCHC 2 cut(s) 358, 2079
MlsI TGGCCA 1 cut(s) 375
MluNI TGGCCA 1 cut(s) 375
MlyI GAGTC 1 cut(s) 2093
MmeI TCCRAC 3 cut(s) 1253, 2221, 2335
Mox20I TGGCCA 1 cut(s) 375
Mph1103I ATGCAT 2 cut(s) 721, 1866
MroI TCCGGA 1 cut(s) 1423
MscI TGGCCA 1 cut(s) 375
MseI TTAA 4 cut(s) 291, 579, 765, 1599
MslI CAYNNNNRTG 1 cut(s) 80
Msp20I TGGCCA 1 cut(s) 375
MspA1I CMGCKG 1 cut(s) 437
MspCI CTTAAG 1 cut(s) 764
MspI CCGG 7 cut(s) 337, 491, 1424, 1898, 1945, 2141, 2282
Mva1269I GAATGC 1 cut(s) 1888
NciI CCSGG 2 cut(s) 1945, 2142
NdeI CATATG 2 cut(s) 1293, 1514
NheI GCTAGC 1 cut(s) 64
NlaIII CATG 9 cut(s) 323, 697, 787, 911, 1099, 1564, 1819, 2015, 2107
NlaIV GGNNCC 7 cut(s) 10, 54, 135, 393, 1902, 2070, 2145
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 4 cut(s) 73, 1523, 1563, 1833
NsiI ATGCAT 2 cut(s) 721, 1866
NspV TTCGAA 1 cut(s) 725
OliI CACNNNNGTG 1 cut(s) 80
PceI AGGCCT 1 cut(s) 423
PctI GAATGC 1 cut(s) 1888
PfeI GAWTC 5 cut(s) 401, 416, 1210, 1690, 1846
PflMI CCANNNNNTGG 3 cut(s) 1637, 1676, 1739
PinAI ACCGGT 2 cut(s) 336, 490
PkrI GCNGC 6 cut(s) 409, 439, 1080, 1621, 1770, 2085
PleI GAGTC 1 cut(s) 2093
PpsI GAGTC 1 cut(s) 2093
PshAI GACNNNNGTC 1 cut(s) 1831
PsiI TTATAA 1 cut(s) 992
PspN4I GGNNCC 7 cut(s) 10, 54, 135, 393, 1902, 2070, 2145
PspPI GGNCC 6 cut(s) 53, 239, 1405, 1613, 1802, 2144
PsrI GAACNNNNNNTAC 2 cut(s) 486, 518
PstNI CAGNNNCTG 1 cut(s) 440
PsuI RGATCY 3 cut(s) 310, 1225, 2271
PvuII CAGCTG 1 cut(s) 437
RsaI GTAC 6 cut(s) 317, 495, 1438, 1546, 1755, 1902
RsaNI GTAC 6 cut(s) 316, 494, 1437, 1545, 1754, 1901
RseI CAYNNNNRTG 1 cut(s) 80
SaqAI TTAA 4 cut(s) 291, 579, 765, 1599
SatI GCNGC 6 cut(s) 408, 438, 1079, 1620, 1769, 2084
Sau96I GGNCC 6 cut(s) 53, 239, 1405, 1613, 1802, 2144
SchI GAGTC 1 cut(s) 2093
SduI GDGCHC 2 cut(s) 358, 2079
SexAI ACCWGGT 3 cut(s) 1636, 1675, 1912
SfaNI GCATC 8 cut(s) 706, 726, 820, 1873, 1953, 1980, 2010, 2146
SfcI CTRYAG 1 cut(s) 1440
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 3 cut(s) 239, 1613, 1802
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 5 cut(s) 764, 834, 980, 1390, 2321
SmoI CTYRAG 5 cut(s) 764, 834, 980, 1390, 2321
SseBI AGGCCT 1 cut(s) 423
SsiI CCGC 5 cut(s) 62, 1769, 2027, 2057, 2083
SspI AATATT 1 cut(s) 1781
SspMI CTAG 5 cut(s) 65, 159, 267, 1737, 1890
StuI AGGCCT 1 cut(s) 423
TaaI ACNGT 6 cut(s) 535, 793, 1717, 2161, 2218, 2239
TaqI TCGA 5 cut(s) 604, 725, 1479, 1792, 1849
TauI GCSGC 2 cut(s) 1771, 2086
TfiI GAWTC 5 cut(s) 401, 416, 1210, 1690, 1846
Tru1I TTAA 4 cut(s) 291, 579, 765, 1599
Tru9I TTAA 4 cut(s) 291, 579, 765, 1599
TscAI CASTG 2 cut(s) 82, 1534
TseFI GTSAC 4 cut(s) 73, 1523, 1563, 1833
TseI GCWGC 4 cut(s) 407, 437, 1078, 1619
Tsp45I GTSAC 4 cut(s) 73, 1523, 1563, 1833
TspGWI ACGGA 2 cut(s) 291, 303
TspRI CASTG 2 cut(s) 82, 1534
Van91I CCANNNNNTGG 3 cut(s) 1637, 1676, 1739
Vha464I CTTAAG 1 cut(s) 764
VpaK11BI GGWCC 3 cut(s) 239, 1613, 1802
XagI CCTNNNNNAGG 3 cut(s) 417, 744, 983
XapI RAATTY 5 cut(s) 245, 347, 1299, 2123, 2259
XmiI GTMKAC 1 cut(s) 530
XspI CTAG 5 cut(s) 65, 159, 267, 1737, 1890
Zsp2I ATGCAT 2 cut(s) 721, 1866
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.