pycom08g13120

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0000091
Physical Location & Seq
Reverse (-)
11755339 .. 11755721
383 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g13120.2

Sequence Viewer

Length: 300 bp
ATGCAACACAAAAAATTGATTTCTTTAGCATTTTTCTTTTTTAGCGTTGAGATCCTTGAAGGAGATGGCGGATACAACTTTGTCTACAAGTACAGTGTGATTGAAGAAGATGTTATCTTTGAGACCGATGAGAAGATCTCTTGTGAGACTAAGTTGGTGGCTTCCCGTAACGGTTCCATCATCAAGAGCACCAAACACTACCACACTAAAGGTGACATTGAGATTAAGGGAAAACATGTTAAGGCTGACAAAGAGAAGGCCTCCCACCTCTTCAAGTTGATGGAGAACTACCTCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

100

Amino Acids

11.45

Weight (kDa)

6.96

Isoelectric Point (pI)

28.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 69
AclWI GGATC 1 cut(s) 46
AfaI GTAC 1 cut(s) 92
AflIII ACRYGT 1 cut(s) 235
AgsI TTSAA 3 cut(s) 59, 104, 274
Alw21I GWGCWC 1 cut(s) 191
Alw26I GTCTC 2 cut(s) 116, 140
AlwI GGATC 1 cut(s) 46
AoxI GGCC 1 cut(s) 258
AsuHPI GGTGA 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 191
BccI CCATC 3 cut(s) 59, 185, 274
BciVI GTATCC 1 cut(s) 65
BcoDI GTCTC 2 cut(s) 116, 140
BfuI GTATCC 1 cut(s) 65
BglII AGATCT 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 175
BplI GAGNNNNNCTC 4 cut(s) 122, 154, 245, 277
BsaI GGTCTC 1 cut(s) 116
BshFI GGCC 1 cut(s) 260
BsiHKAI GWGCWC 1 cut(s) 191
BsmAI GTCTC 2 cut(s) 116, 140
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 1 cut(s) 191
Bsp143I GATC 2 cut(s) 51, 135
BspACI CCGC 1 cut(s) 69
BspANI GGCC 1 cut(s) 260
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 1 cut(s) 46
BspTNI GGTCTC 1 cut(s) 116
BssMI GATC 2 cut(s) 51, 135
Bst4CI ACNGT 2 cut(s) 95, 173
Bst6I CTCTTC 1 cut(s) 275
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 2 cut(s) 54, 138
BstMAI GTCTC 2 cut(s) 116, 140
BstMBI GATC 2 cut(s) 51, 135
BstNSI RCATGY 1 cut(s) 239
BstX2I RGATCY 2 cut(s) 51, 135
BstYI RGATCY 2 cut(s) 51, 135
BsuI GTATCC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 260
BtsIMutI CAGTG 1 cut(s) 100
Csp6I GTAC 1 cut(s) 91
CviAII CATG 1 cut(s) 236
CviJI RGCY 3 cut(s) 161, 245, 260
CviKI_1 RGCY 3 cut(s) 161, 245, 260
CviQI GTAC 1 cut(s) 91
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 53, 137
DpnII GATC 2 cut(s) 51, 135
Eam1104I CTCTTC 1 cut(s) 275
EarI CTCTTC 1 cut(s) 275
EciI GGCGGA 1 cut(s) 84
Eco147I AGGCCT 1 cut(s) 260
Eco31I GGTCTC 1 cut(s) 116
FaeI CATG 1 cut(s) 239
FaiI YATR 1 cut(s) 237
FatI CATG 1 cut(s) 235
FblI GTMKAC 1 cut(s) 84
HaeIII GGCC 1 cut(s) 260
Hin1II CATG 1 cut(s) 239
HphI GGTGA 1 cut(s) 224
Hpy166II GTNNAC 1 cut(s) 85
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 1 cut(s) 85
HpyAV CCTTC 2 cut(s) 53, 250
HpyCH4III ACNGT 2 cut(s) 95, 173
HpyCH4V TGCA 1 cut(s) 4
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 1 cut(s) 239
Kzo9I GATC 2 cut(s) 51, 135
MaeIII GTNAC 2 cut(s) 167, 212
MalI GATC 2 cut(s) 53, 137
MboI GATC 2 cut(s) 51, 135
MboII GAAGA 4 cut(s) 116, 119, 145, 262
MflI RGATCY 2 cut(s) 51, 135
MhlI GDGCHC 1 cut(s) 191
MluCI AATT 1 cut(s) 14
MnlI CCTC 2 cut(s) 271, 278
MseI TTAA 2 cut(s) 225, 240
NdeII GATC 2 cut(s) 51, 135
NlaIII CATG 1 cut(s) 239
NlaIV GGNNCC 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 239
PceI AGGCCT 1 cut(s) 260
PciI ACATGT 1 cut(s) 235
PscI ACATGT 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 175
PsuI RGATCY 2 cut(s) 51, 135
RsaI GTAC 1 cut(s) 92
RsaNI GTAC 1 cut(s) 91
SaqAI TTAA 2 cut(s) 225, 240
Sau3AI GATC 2 cut(s) 51, 135
SduI GDGCHC 1 cut(s) 191
SetI ASST 3 cut(s) 214, 270, 294
SgeI CNNG 7 cut(s) 68, 100, 153, 177, 196, 248, 286
Sse9I AATT 1 cut(s) 14
SseBI AGGCCT 1 cut(s) 260
SsiI CCGC 1 cut(s) 69
StuI AGGCCT 1 cut(s) 260
TaaI ACNGT 2 cut(s) 95, 173
TaqII GACCGA 1 cut(s) 140
TasI AATT 1 cut(s) 14
TatI WGTACW 1 cut(s) 90
Tru1I TTAA 2 cut(s) 225, 240
Tru9I TTAA 2 cut(s) 225, 240
TscAI CASTG 1 cut(s) 100
TseFI GTSAC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 212
TspRI CASTG 1 cut(s) 100
XceI RCATGY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.