Rw4G021370

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000091
Physical Location & Seq
Reverse (-)
46046053 .. 46046535
483 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G021370.1

Sequence Viewer

Length: 435 bp
ATGGGTGTGTTCACTTACGAAACCGAGTTTACATCCGTCATCCCACCACCTAGATTGTTCAAGGCTTTCATCCTTGATGCGGACAATCTCATCCCCAAGATTGCTCCACAAGCAGTTAAGTGTGCTGAAATCATCGAAGGAGATGGAGGAGTAGGAACCATCAAGAAGATCACCTTCGGTGAAGACAACTTTGTCTACAGCTACAGTTTGGTCGAAGGAGATGCCTTGTCCGACAAGATTGAGAAGATCTCTTACGAGACCAAATTGGTGGCATCTTCCGATGGAGGATCCATCATCAAGAGCACCAGTAACTACCACACCAAAGGTGACGTGGAGATCAAGGAAGAGCACGTTAAGGCTGGAAAAGAGAAAGCGTCCCATCTCTTCAAGCTTGTTGAAGGCTACCTCATGGCCAATCCCAATGAATACTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

144

Amino Acids

15.8

Weight (kDa)

5.08

Isoelectric Point (pI)

18.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 63 1e-06 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 61 - 138 4.3e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 191
AccI GTMKAC 1 cut(s) 195
AciI CCGC 1 cut(s) 80
AclWI GGATC 2 cut(s) 282, 295
AcoI YGGCCR 1 cut(s) 411
AfiI CCNNNNNNNGG 1 cut(s) 79
AgsI TTSAA 3 cut(s) 61, 388, 398
AjiI CACGTC 1 cut(s) 331
AluBI AGCT 2 cut(s) 201, 391
AluI AGCT 2 cut(s) 201, 391
Alw21I GWGCWC 2 cut(s) 305, 351
Alw26I GTCTC 1 cut(s) 251
AlwI GGATC 2 cut(s) 282, 295
AoxI GGCC 1 cut(s) 411
AsuHPI GGTGA 3 cut(s) 163, 191, 338
BalI TGGCCA 1 cut(s) 413
BamHI GGATCC 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 236, 268
BbsI GAAGAC 1 cut(s) 189
Bbv12I GWGCWC 2 cut(s) 305, 351
BccI CCATC 5 cut(s) 137, 167, 275, 299, 387
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 2 cut(s) 196, 202
BglII AGATCT 1 cut(s) 246
BmgBI CACGTC 1 cut(s) 331
BmiI GGNNCC 2 cut(s) 157, 289
BmsI GCATC 3 cut(s) 67, 211, 281
BpiI GAAGAC 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 233, 265
BsaI GGTCTC 1 cut(s) 251
Bsc4I CCNNNNNNNGG 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 306
BseGI GGATG 4 cut(s) 32, 39, 69, 90
BseLI CCNNNNNNNGG 1 cut(s) 79
BseNI ACTGG 1 cut(s) 306
BseRI GAGGAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 413
BsiHKAI GWGCWC 2 cut(s) 305, 351
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 1 cut(s) 413
Bso31I GGTCTC 1 cut(s) 251
Bsp1286I GDGCHC 2 cut(s) 305, 351
Bsp143I GATC 4 cut(s) 168, 246, 287, 336
BspACI CCGC 1 cut(s) 80
BspANI GGCC 1 cut(s) 413
BspLI GGNNCC 2 cut(s) 157, 289
BspPI GGATC 2 cut(s) 282, 295
BspQI GCTCTTC 1 cut(s) 339
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 306
BssMI GATC 4 cut(s) 168, 246, 287, 336
Bst4CI ACNGT 2 cut(s) 206, 431
Bst6I CTCTTC 2 cut(s) 339, 389
BstF5I GGATG 4 cut(s) 32, 39, 69, 90
BstKTI GATC 4 cut(s) 171, 249, 290, 339
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 4 cut(s) 168, 246, 287, 336
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 196, 202
BstV2I GAAGAC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 246, 287
BstXI CCANNNNNNTGG 1 cut(s) 268
BstYI RGATCY 2 cut(s) 246, 287
BsuRI GGCC 1 cut(s) 413
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 4 cut(s) 32, 39, 69, 90
CseI GACGC 1 cut(s) 363
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 1 cut(s) 409
CviJI RGCY 6 cut(s) 65, 201, 359, 391, 402, 413
CviKI_1 RGCY 6 cut(s) 65, 201, 359, 391, 402, 413
DpnI GATC 4 cut(s) 170, 248, 289, 338
DpnII GATC 4 cut(s) 168, 246, 287, 336
DrdI GACNNNNNNGTC 1 cut(s) 191
DseDI GACNNNNNNGTC 1 cut(s) 191
EaeI YGGCCR 1 cut(s) 411
Eam1104I CTCTTC 2 cut(s) 339, 389
EarI CTCTTC 2 cut(s) 339, 389
Eco31I GGTCTC 1 cut(s) 251
FaeI CATG 1 cut(s) 412
FaiI YATR 1 cut(s) 410
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 1 cut(s) 361
FatI CATG 1 cut(s) 408
FblI GTMKAC 1 cut(s) 195
FokI GGATG 4 cut(s) 19, 26, 56, 77
FspBI CTAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 413
HgaI GACGC 1 cut(s) 363
Hin1II CATG 1 cut(s) 412
HindIII AAGCTT 1 cut(s) 389
HphI GGTGA 3 cut(s) 163, 191, 338
Hpy166II GTNNAC 3 cut(s) 12, 30, 196
Hpy188I TCNGA 2 cut(s) 232, 280
Hpy188III TCNNGA 2 cut(s) 163, 298
Hpy8I GTNNAC 3 cut(s) 12, 30, 196
HpyAV CCTTC 4 cut(s) 131, 184, 209, 392
HpyCH4III ACNGT 2 cut(s) 206, 431
HpyCH4IV ACGT 2 cut(s) 330, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpySE526I ACGT 2 cut(s) 330, 351
Hsp92II CATG 1 cut(s) 412
Kzo9I GATC 4 cut(s) 168, 246, 287, 336
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 2 cut(s) 319, 345
LweI GCATC 3 cut(s) 67, 211, 281
MaeI CTAG 1 cut(s) 51
MaeII ACGT 2 cut(s) 330, 351
MaeIII GTNAC 2 cut(s) 308, 326
MalI GATC 4 cut(s) 170, 248, 289, 338
MboI GATC 4 cut(s) 168, 246, 287, 336
MboII GAAGA 6 cut(s) 178, 194, 256, 267, 356, 376
MflI RGATCY 2 cut(s) 246, 287
MhlI GDGCHC 2 cut(s) 305, 351
MlsI TGGCCA 1 cut(s) 413
MluCI AATT 1 cut(s) 263
MluNI TGGCCA 1 cut(s) 413
MmeI TCCRAC 1 cut(s) 255
MnlI CCTC 3 cut(s) 140, 278, 416
Mox20I TGGCCA 1 cut(s) 413
MscI TGGCCA 1 cut(s) 413
MseI TTAA 2 cut(s) 117, 354
Msp20I TGGCCA 1 cut(s) 413
MwoI GCNNNNNNNGC 1 cut(s) 110
NdeII GATC 4 cut(s) 168, 246, 287, 336
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 2 cut(s) 157, 289
NmuCI GTSAC 1 cut(s) 326
PciSI GCTCTTC 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 157, 289
PsuI RGATCY 2 cut(s) 246, 287
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 117, 354
Sau3AI GATC 4 cut(s) 168, 246, 287, 336
SduI GDGCHC 2 cut(s) 305, 351
SetI ASST 8 cut(s) 52, 176, 203, 328, 333, 354, 393, 408
SfaNI GCATC 3 cut(s) 67, 211, 281
SfcI CTRYAG 2 cut(s) 196, 202
Sse9I AATT 1 cut(s) 263
SsiI CCGC 1 cut(s) 80
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 206, 431
TaiI ACGT 2 cut(s) 333, 354
TaqI TCGA 2 cut(s) 135, 213
TasI AATT 1 cut(s) 263
Tru1I TTAA 2 cut(s) 117, 354
Tru9I TTAA 2 cut(s) 117, 354
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 58
TspGWI ACGGA 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XmiI GTMKAC 1 cut(s) 195
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.