Rh4CG262600

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000091
Physical Location & Seq
Reverse (-)
51780157 .. 51780616
460 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG262600.1

Sequence Viewer

Length: 387 bp
ATGAGTTCACCACCGTCATCCCGCCACCAAGATTGTTCAAGGCTTTCATCCTTGATGCTGACAATCTCATTCCCAAGATTGCTCCACAAGCTCCAGTTCGGCTCTGTGACCCACAAGATCGATGGGATTGACAAAGACAACTTTGTCTACAACTACAGTTTGGTCGAAGGAGATGCCTTGTCAGACAAGATTGAGAAGATCTCTTACGAGACCAAATTGGTGGCATCTTCCGATGGAGGATCCATCATCAAGAGCACCAGTAACTACCACACCAAAGGTGACGTGGAGATCAAGGAAGAGCATGTTAAGGCTGGAAAAGAGAAGGCGTCCCACCTCTTCAAGCTTGTTGAAGGCTACCTCTTGGCCAATCCTAATGAATACTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

128

Amino Acids

14.26

Weight (kDa)

6.58

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 36 - 123 4.8e-10 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 143
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 22
AclWI GGATC 2 cut(s) 234, 247
AcoI YGGCCR 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 326
AgsI TTSAA 3 cut(s) 39, 340, 350
AjiI CACGTC 1 cut(s) 283
AluBI AGCT 2 cut(s) 91, 343
AluI AGCT 2 cut(s) 91, 343
Alw21I GWGCWC 1 cut(s) 257
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 234, 247
AoxI GGCC 1 cut(s) 363
AsuHPI GGTGA 1 cut(s) 290
BalI TGGCCA 1 cut(s) 365
BamHI GGATCC 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 188, 220
Bbv12I GWGCWC 1 cut(s) 257
BccI CCATC 3 cut(s) 116, 227, 251
BcgI CGANNNNNNTGC 2 cut(s) 155, 189
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 154
BglII AGATCT 1 cut(s) 198
BmgBI CACGTC 1 cut(s) 283
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 3 cut(s) 45, 163, 233
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 77
Bsa29I ATCGAT 1 cut(s) 120
BsaHI GRCGYC 1 cut(s) 326
BsaI GGTCTC 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 94, 258
BseCI ATCGAT 1 cut(s) 120
BseGI GGATG 2 cut(s) 17, 47
BseNI ACTGG 2 cut(s) 94, 258
BshFI GGCC 1 cut(s) 365
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 1 cut(s) 257
BslFI GGGAC 1 cut(s) 313
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 313
BsnI GGCC 1 cut(s) 365
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 4 cut(s) 117, 198, 239, 288
BspACI CCGC 1 cut(s) 22
BspANI GGCC 1 cut(s) 365
BspDI ATCGAT 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 234, 247
BspQI GCTCTTC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 203
BsrI ACTGG 2 cut(s) 94, 258
BssMI GATC 4 cut(s) 117, 198, 239, 288
BssNI GRCGYC 1 cut(s) 326
Bst4CI ACNGT 3 cut(s) 15, 158, 383
Bst6I CTCTTC 2 cut(s) 291, 341
BstACI GRCGYC 1 cut(s) 326
BstF5I GGATG 2 cut(s) 17, 47
BstKTI GATC 4 cut(s) 120, 201, 242, 291
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 4 cut(s) 117, 198, 239, 288
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 154
BstX2I RGATCY 2 cut(s) 198, 239
BstXI CCANNNNNNTGG 1 cut(s) 220
BstYI RGATCY 2 cut(s) 198, 239
Bsu15I ATCGAT 1 cut(s) 120
BsuRI GGCC 1 cut(s) 365
BsuTUI ATCGAT 1 cut(s) 120
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 2 cut(s) 17, 47
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 315
CspCI CAANNNNNGTGG 2 cut(s) 14, 49
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 43, 91, 102, 311, 343, 354, 365
CviKI_1 RGCY 7 cut(s) 43, 91, 102, 311, 343, 354, 365
DpnI GATC 4 cut(s) 119, 200, 241, 290
DpnII GATC 4 cut(s) 117, 198, 239, 288
DrdI GACNNNNNNGTC 1 cut(s) 143
DseDI GACNNNNNNGTC 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 2 cut(s) 291, 341
EarI CTCTTC 2 cut(s) 291, 341
Eco31I GGTCTC 1 cut(s) 203
FaeI CATG 1 cut(s) 305
FaiI YATR 1 cut(s) 303
FaqI GGGAC 1 cut(s) 313
FatI CATG 1 cut(s) 301
FauI CCCGC 1 cut(s) 29
FblI GTMKAC 1 cut(s) 147
FokI GGATG 2 cut(s) 4, 34
GsuI CTGGAG 1 cut(s) 77
HaeIII GGCC 1 cut(s) 365
HgaI GACGC 1 cut(s) 315
Hin1I GRCGYC 1 cut(s) 326
Hin1II CATG 1 cut(s) 305
HindIII AAGCTT 1 cut(s) 341
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 2 cut(s) 8, 148
Hpy188I TCNGA 2 cut(s) 184, 232
Hpy188III TCNNGA 1 cut(s) 250
Hpy8I GTNNAC 2 cut(s) 8, 148
HpyAV CCTTC 3 cut(s) 161, 316, 344
HpyCH4III ACNGT 3 cut(s) 15, 158, 383
HpyCH4IV ACGT 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpySE526I ACGT 1 cut(s) 282
Hsp92I GRCGYC 1 cut(s) 326
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 4 cut(s) 117, 198, 239, 288
LguI GCTCTTC 1 cut(s) 291
LmnI GCTCC 2 cut(s) 87, 96
LpnPI CCDG 3 cut(s) 107, 271, 297
LweI GCATC 3 cut(s) 45, 163, 233
MaeII ACGT 1 cut(s) 282
MaeIII GTNAC 3 cut(s) 106, 260, 278
MalI GATC 4 cut(s) 119, 200, 241, 290
MboI GATC 4 cut(s) 117, 198, 239, 288
MboII GAAGA 4 cut(s) 208, 219, 308, 328
MflI RGATCY 2 cut(s) 198, 239
MhlI GDGCHC 1 cut(s) 257
MlsI TGGCCA 1 cut(s) 365
MluCI AATT 1 cut(s) 215
MluNI TGGCCA 1 cut(s) 365
MnlI CCTC 3 cut(s) 230, 344, 368
Mox20I TGGCCA 1 cut(s) 365
MscI TGGCCA 1 cut(s) 365
MseI TTAA 2 cut(s) 306, 385
Msp20I TGGCCA 1 cut(s) 365
MwoI GCNNNNNNNGC 1 cut(s) 88
NdeII GATC 4 cut(s) 117, 198, 239, 288
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 2 cut(s) 106, 278
NspI RCATGY 1 cut(s) 305
PciSI GCTCTTC 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 2 cut(s) 198, 239
SapI GCTCTTC 1 cut(s) 291
SaqAI TTAA 2 cut(s) 306, 385
Sau3AI GATC 4 cut(s) 117, 198, 239, 288
SduI GDGCHC 1 cut(s) 257
SetI ASST 6 cut(s) 93, 280, 285, 336, 345, 360
SfaNI GCATC 3 cut(s) 45, 163, 233
SfcI CTRYAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 215
SsiI CCGC 1 cut(s) 22
TaaI ACNGT 3 cut(s) 15, 158, 383
TaiI ACGT 1 cut(s) 285
TaqI TCGA 2 cut(s) 120, 165
TasI AATT 1 cut(s) 215
Tru1I TTAA 2 cut(s) 306, 385
Tru9I TTAA 2 cut(s) 306, 385
TseFI GTSAC 2 cut(s) 106, 278
Tsp45I GTSAC 2 cut(s) 106, 278
TspDTI ATGAA 1 cut(s) 36
XceI RCATGY 1 cut(s) 305
XcmI CCANNNNNNNNNTGG 2 cut(s) 119, 280
XmiI GTMKAC 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.