Rroxscaffold_5G00354670

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000091
Physical Location & Seq
Forward (+)
33130314 .. 33135199
4886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354670.1

Sequence Viewer

Length: 720 bp
ATGCACAGATGGGACTATGATAAATATGAAGGCAAGAGCTACGGCGAGGAGGAGGAGGATGAAGGTGCGGAGCTCGAAGAGGAGAGAGGAGGTAGAGCGGCGGAGGCGGGGGCGGGGAGTGTTGGGTTGCTACCGGAGCCGAATGGTGGAGACATATCTTCATCTTCTTCCATGAGAAATTCTGGGTTCTTGTTCGCTTTGGCTTTGGTTAAGAAAGTTGGGCGCTTTTTCATCATCATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATTCCACCAGCTAGGTTGTTCAAGGCCTTTGTCCTTGACGCCGACAATCTCATCCCCAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGTGTTGGAACCATCAAGAAGATCAACCTCGGTGAAGGAAGTGAATACAGCTATGTGAAGCACCAGATTGACGGAATTGACAAAGACAACTTCGTGTACCAGTACAGCATGACTGAAGGAGATGCTATCTCAGACAAAATTGAGAAGATCTCCTATGAGACTAAGTTGGTGGCATCTTCCGATGGAGGCTCCATCATCAAGAGCACCAGCAACTACCACACCAAGGGTGACGTGGAGATCAAGGAAGAGCATGTTAAGGCTGGCAAAGAAAGGGCCGCCGGTTTGTTCAAGATTATTGAGAGCCACCTTCTAGCGAACCCTGATGTTTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

239

Amino Acids

26.09

Weight (kDa)

4.86

Isoelectric Point (pI)

31.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 80 - 234 6e-25 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 98
AciI CCGC 6 cut(s) 68, 98, 101, 107, 113, 660
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 315
AfaI GTAC 2 cut(s) 482, 488
AfiI CCNNNNNNNGG 2 cut(s) 146, 607
AgsI TTSAA 3 cut(s) 298, 374, 673
AjiI CACGTC 1 cut(s) 616
AluBI AGCT 4 cut(s) 39, 73, 287, 435
AluI AGCT 4 cut(s) 39, 73, 287, 435
Alw21I GWGCWC 2 cut(s) 75, 590
Alw26I GTCTC 2 cut(s) 144, 536
AoxI GGCC 2 cut(s) 300, 657
ApoI RAATTY 1 cut(s) 178
AspLEI GCGC 1 cut(s) 225
AspS9I GGNCC 1 cut(s) 657
AsuHPI GGTGA 4 cut(s) 259, 389, 428, 623
BanII GRGCYC 1 cut(s) 75
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 75, 590
BccI CCATC 5 cut(s) 3, 374, 404, 560, 584
BceAI ACGGC 1 cut(s) 58
BcoDI GTCTC 2 cut(s) 144, 536
BfaI CTAG 2 cut(s) 288, 695
BfoI RGCGCY 1 cut(s) 226
BglII AGATCT 1 cut(s) 531
BisI GCNGC 2 cut(s) 99, 660
BlsI GCNGC 2 cut(s) 100, 661
BmgBI CACGTC 1 cut(s) 616
BmgT120I GGNCC 1 cut(s) 657
BmiI GGNNCC 3 cut(s) 138, 394, 574
BmsI GCATC 2 cut(s) 496, 566
BpiI GAAGAC 1 cut(s) 238
BplI GAGNNNNNCTC 4 cut(s) 254, 286, 518, 550
BsaHI GRCGYC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 412, 606
BsaWI WCCGGW 1 cut(s) 133
Bsc4I CCNNNNNNNGG 2 cut(s) 146, 607
Bse118I RCCGGY 1 cut(s) 662
Bse1I ACTGG 1 cut(s) 484
BseDI CCNNGG 2 cut(s) 412, 606
BseGI GGATG 2 cut(s) 64, 327
BseLI CCNNNNNNNGG 2 cut(s) 146, 607
BseMII CTCAG 2 cut(s) 252, 528
BseNI ACTGG 1 cut(s) 484
BseRI GAGGAG 5 cut(s) 62, 65, 68, 95, 102
BshFI GGCC 2 cut(s) 302, 659
BsiHKAI GWGCWC 2 cut(s) 75, 590
BsiSI CCGG 2 cut(s) 134, 663
BslFI GGGAC 1 cut(s) 26
BslI CCNNNNNNNGG 2 cut(s) 146, 607
BsmAI GTCTC 2 cut(s) 144, 536
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 302, 659
Bsp1286I GDGCHC 2 cut(s) 75, 590
Bsp143I GATC 3 cut(s) 405, 531, 621
BspACI CCGC 6 cut(s) 68, 98, 101, 107, 113, 660
BspANI GGCC 2 cut(s) 302, 659
BspCNI CTCAG 2 cut(s) 253, 527
BspLI GGNNCC 3 cut(s) 138, 394, 574
BspQI GCTCTTC 1 cut(s) 624
BsrBI CCGCTC 1 cut(s) 98
BsrFI RCCGGY 1 cut(s) 662
BsrI ACTGG 1 cut(s) 484
BssAI RCCGGY 1 cut(s) 662
BssECI CCNNGG 2 cut(s) 412, 606
BssMI GATC 3 cut(s) 405, 531, 621
BssNI GRCGYC 1 cut(s) 315
BssT1I CCWWGG 1 cut(s) 606
Bst6I CTCTTC 2 cut(s) 72, 624
BstACI GRCGYC 1 cut(s) 315
BstC8I GCNNGC 1 cut(s) 646
BstDEI CTNAG 3 cut(s) 261, 514, 546
BstF5I GGATG 2 cut(s) 64, 327
BstH2I RGCGCY 1 cut(s) 226
BstHHI GCGC 1 cut(s) 225
BstKTI GATC 3 cut(s) 408, 534, 624
BstMAI GTCTC 2 cut(s) 144, 536
BstMBI GATC 3 cut(s) 405, 531, 621
BstMWI GCNNNNNNNGC 3 cut(s) 104, 136, 347
BstNSI RCATGY 1 cut(s) 638
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 531
BstYI RGATCY 1 cut(s) 531
BsuRI GGCC 2 cut(s) 302, 659
BtrI CACGTC 1 cut(s) 616
BtsCI GGATG 2 cut(s) 64, 327
Cac8I GCNNGC 1 cut(s) 646
CfoI GCGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 662
Cfr13I GGNCC 1 cut(s) 657
CseI GACGC 1 cut(s) 323
Csp6I GTAC 2 cut(s) 481, 487
CviAII CATG 4 cut(s) 172, 238, 493, 635
CviQI GTAC 2 cut(s) 481, 487
DdeI CTNAG 3 cut(s) 261, 514, 546
DpnI GATC 3 cut(s) 407, 533, 623
DpnII GATC 3 cut(s) 405, 531, 621
Eam1104I CTCTTC 2 cut(s) 72, 624
EarI CTCTTC 2 cut(s) 72, 624
EciI GGCGGA 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 73
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 75
Eco53kI GAGCTC 1 cut(s) 73
Eco57I CTGAAG 1 cut(s) 519
EcoICRI GAGCTC 1 cut(s) 73
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 75
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 4 cut(s) 175, 241, 496, 638
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 171, 237, 492, 634
FauI CCCGC 2 cut(s) 100, 106
Fnu4HI GCNGC 2 cut(s) 99, 660
FokI GGATG 2 cut(s) 71, 314
FriOI GRGCYC 1 cut(s) 75
Fsp4HI GCNGC 2 cut(s) 99, 660
FspBI CTAG 2 cut(s) 288, 695
GlaI GCGC 1 cut(s) 224
GluI GCNGC 2 cut(s) 99, 660
HaeII RGCGCY 1 cut(s) 226
HaeIII GGCC 2 cut(s) 302, 659
HapII CCGG 2 cut(s) 134, 663
HgaI GACGC 1 cut(s) 323
HhaI GCGC 1 cut(s) 225
Hin1I GRCGYC 1 cut(s) 315
Hin1II CATG 4 cut(s) 175, 241, 496, 638
Hin6I GCGC 1 cut(s) 223
HinP1I GCGC 1 cut(s) 223
HinfI GANTC 2 cut(s) 257, 367
HpaII CCGG 2 cut(s) 134, 663
HphI GGTGA 4 cut(s) 259, 389, 428, 623
Hpy166II GTNNAC 3 cut(s) 267, 481, 712
Hpy188I TCNGA 3 cut(s) 262, 517, 565
Hpy188III TCNNGA 4 cut(s) 371, 400, 583, 673
Hpy8I GTNNAC 3 cut(s) 267, 481, 712
HpyAV CCTTC 6 cut(s) 23, 56, 368, 413, 494, 701
HpyCH4IV ACGT 1 cut(s) 615
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 104, 136, 347
HpyF3I CTNAG 3 cut(s) 261, 514, 546
HpySE526I ACGT 1 cut(s) 615
Hsp92I GRCGYC 1 cut(s) 315
Hsp92II CATG 4 cut(s) 175, 241, 496, 638
HspAI GCGC 1 cut(s) 223
Kzo9I GATC 3 cut(s) 405, 531, 621
LguI GCTCTTC 1 cut(s) 624
LmnI GCTCC 4 cut(s) 70, 136, 346, 578
LpnPI CCDG 8 cut(s) 147, 168, 297, 461, 497, 604, 630, 676
LweI GCATC 2 cut(s) 496, 566
MaeI CTAG 2 cut(s) 288, 695
MaeII ACGT 1 cut(s) 615
MaeIII GTNAC 1 cut(s) 611
MalI GATC 3 cut(s) 407, 533, 623
MbiI CCGCTC 1 cut(s) 98
MboI GATC 3 cut(s) 405, 531, 621
MboII GAAGA 9 cut(s) 89, 150, 156, 159, 238, 415, 541, 552, 641
MflI RGATCY 1 cut(s) 531
MhlI GDGCHC 2 cut(s) 75, 590
MluCI AATT 3 cut(s) 178, 459, 522
MmeI TCCRAC 1 cut(s) 370
MseI TTAA 3 cut(s) 210, 354, 639
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 2 cut(s) 134, 663
MwoI GCNNNNNNNGC 3 cut(s) 104, 136, 347
NdeII GATC 3 cut(s) 405, 531, 621
NlaIII CATG 4 cut(s) 175, 241, 496, 638
NlaIV GGNNCC 3 cut(s) 138, 394, 574
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 611
NspI RCATGY 1 cut(s) 638
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 624
PfeI GAWTC 2 cut(s) 257, 367
PkrI GCNGC 2 cut(s) 100, 661
Psp124BI GAGCTC 1 cut(s) 75
PspN4I GGNNCC 3 cut(s) 138, 394, 574
PspPI GGNCC 1 cut(s) 657
PsuI RGATCY 1 cut(s) 531
RsaI GTAC 2 cut(s) 482, 488
RsaNI GTAC 2 cut(s) 481, 487
RseI CAYNNNNRTG 1 cut(s) 236
SacI GAGCTC 1 cut(s) 75
SapI GCTCTTC 1 cut(s) 624
SaqAI TTAA 3 cut(s) 210, 354, 639
SatI GCNGC 2 cut(s) 99, 660
Sau3AI GATC 3 cut(s) 405, 531, 621
Sau96I GGNCC 1 cut(s) 657
SduI GDGCHC 2 cut(s) 75, 590
SfaNI GCATC 2 cut(s) 496, 566
SmiMI CAYNNNNRTG 1 cut(s) 236
Sse9I AATT 3 cut(s) 178, 459, 522
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 6 cut(s) 68, 98, 101, 107, 113, 660
SspMI CTAG 2 cut(s) 288, 695
SstI GAGCTC 1 cut(s) 75
StuI AGGCCT 1 cut(s) 302
StyI CCWWGG 1 cut(s) 606
TaiI ACGT 1 cut(s) 618
TaqI TCGA 1 cut(s) 75
TasI AATT 3 cut(s) 178, 459, 522
TatI WGTACW 1 cut(s) 486
TauI GCSGC 2 cut(s) 101, 662
TfiI GAWTC 2 cut(s) 257, 367
Tru1I TTAA 3 cut(s) 210, 354, 639
Tru9I TTAA 3 cut(s) 210, 354, 639
TseFI GTSAC 1 cut(s) 611
Tsp45I GTSAC 1 cut(s) 611
TspDTI ATGAA 5 cut(s) 42, 75, 150, 220, 270
TspGWI ACGGA 1 cut(s) 471
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 638
XcmI CCANNNNNNNNNTGG 1 cut(s) 613
XspI CTAG 2 cut(s) 288, 695
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.