Rmu_sc0002260.1_g000047

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002260.1
Physical Location & Seq
Reverse (-)
204372 .. 205013
642 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002260.1_g000047.1.cds

Sequence Viewer

Length: 474 bp
atgggtatcttcaagtacgagtccgagtttacctctgtcatccccccagctaggttgttcaaggctttcgttctcgatgctgacaacctcatccccaagattgccccacaggcagttaagtccgctgagatccttgaaggagatggtggtgctggaaccatcaagaagatcaccttcggcgaaggtagcacttacagctatgtgaagcacagaattgatagcattgacaaggagaactttgcctactgctatagtgtgattgagggagctcccgactcaattgagaagatctgctacgagactaagttggtggcatccggcagtggtaccatcatcaagagcaccagtgaataccatgtcaagggtgatgttgagatcaaggaagagcacgtcaaggccgggaaagagaaggcttctcacctcttcaaggtcattgagaactacctcttggagcaccatgatgcctacaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

157

Amino Acids

17.38

Weight (kDa)

5.69

Isoelectric Point (pI)

21.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 326
AccB1I GGYRCC 1 cut(s) 326
AciI CCGC 1 cut(s) 123
AclWI GGATC 1 cut(s) 124
AfaI GTAC 2 cut(s) 17, 328
AfiI CCNNNNNNNGG 3 cut(s) 51, 361, 427
AgsI TTSAA 4 cut(s) 13, 61, 137, 427
AjiI CACGTC 1 cut(s) 391
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 3 cut(s) 50, 198, 269
AluI AGCT 3 cut(s) 50, 198, 269
Alw21I GWGCWC 4 cut(s) 271, 344, 390, 456
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 124
AoxI GGCC 1 cut(s) 396
Asp718I GGTACC 1 cut(s) 326
AsuC2I CCSGG 1 cut(s) 400
AsuHPI GGTGA 3 cut(s) 163, 377, 410
BanI GGYRCC 1 cut(s) 326
BanII GRGCYC 1 cut(s) 271
BarI GAAGNNNNNNTAC 2 cut(s) 278, 310
Bbv12I GWGCWC 4 cut(s) 271, 344, 390, 456
BccI CCATC 3 cut(s) 137, 167, 338
BcnI CCSGG 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 293
BfaI CTAG 1 cut(s) 51
BfmI CTRYAG 1 cut(s) 250
BglI GCCNNNNNGGC 1 cut(s) 110
BglII AGATCT 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 400
BmgBI CACGTC 1 cut(s) 391
BmiI GGNNCC 2 cut(s) 157, 328
BmrFI CCNGG 1 cut(s) 400
BmsI GCATC 3 cut(s) 67, 323, 451
BplI GAGNNNNNCTC 2 cut(s) 17, 49
BpuMI CCSGG 1 cut(s) 400
Bsc4I CCNNNNNNNGG 3 cut(s) 51, 361, 427
Bse1I ACTGG 1 cut(s) 345
BseGI GGATG 3 cut(s) 39, 90, 314
BseLI CCNNNNNNNGG 3 cut(s) 51, 361, 427
BseMII CTCAG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 345
BseYI CCCAGC 1 cut(s) 46
BshFI GGCC 1 cut(s) 398
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 4 cut(s) 271, 344, 390, 456
BsiSI CCGG 2 cut(s) 318, 399
BslI CCNNNNNNNGG 3 cut(s) 51, 361, 427
BsmAI GTCTC 1 cut(s) 293
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 4 cut(s) 271, 344, 390, 456
Bsp143I GATC 4 cut(s) 129, 168, 288, 375
BspACI CCGC 1 cut(s) 123
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 157, 328
BspPI GGATC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 378
BspT107I GGYRCC 1 cut(s) 326
BsrI ACTGG 1 cut(s) 345
BssMI GATC 4 cut(s) 129, 168, 288, 375
Bst6I CTCTTC 2 cut(s) 378, 428
BstDEI CTNAG 2 cut(s) 126, 303
BstENI CCTNNNNNAGG 1 cut(s) 425
BstF5I GGATG 3 cut(s) 39, 90, 314
BstKTI GATC 4 cut(s) 132, 171, 291, 378
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 4 cut(s) 129, 168, 288, 375
BstMWI GCNNNNNNNGC 3 cut(s) 110, 186, 195
BstSCI CCNGG 1 cut(s) 398
BstSFI CTRYAG 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 129, 288
BstYI RGATCY 2 cut(s) 129, 288
BsuRI GGCC 1 cut(s) 398
BtrI CACGTC 1 cut(s) 391
BtsCI GGATG 3 cut(s) 39, 90, 314
BtsI GCAGTG 1 cut(s) 328
BtsIMutI CAGTG 2 cut(s) 328, 352
Csp6I GTAC 2 cut(s) 16, 327
CviAII CATG 2 cut(s) 356, 458
CviJI RGCY 6 cut(s) 50, 65, 198, 269, 398, 413
CviKI_1 RGCY 6 cut(s) 50, 65, 198, 269, 398, 413
CviQI GTAC 2 cut(s) 16, 327
DdeI CTNAG 2 cut(s) 126, 303
DpnI GATC 4 cut(s) 131, 170, 290, 377
DpnII GATC 4 cut(s) 129, 168, 288, 375
Eam1104I CTCTTC 2 cut(s) 378, 428
EarI CTCTTC 2 cut(s) 378, 428
Ecl136II GAGCTC 1 cut(s) 269
Eco24I GRGCYC 1 cut(s) 271
Eco53kI GAGCTC 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 269
EcoNI CCTNNNNNAGG 1 cut(s) 425
EcoT38I GRGCYC 1 cut(s) 271
FaeI CATG 2 cut(s) 359, 461
FaiI YATR 4 cut(s) 201, 252, 357, 459
FalI AAGNNNNNCTT 4 cut(s) 158, 190, 221, 253
FatI CATG 2 cut(s) 355, 457
FokI GGATG 3 cut(s) 26, 77, 301
FriOI GRGCYC 1 cut(s) 271
FspBI CTAG 1 cut(s) 51
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 318, 399
Hin1II CATG 2 cut(s) 359, 461
HinfI GANTC 2 cut(s) 20, 275
HpaII CCGG 2 cut(s) 318, 399
HphI GGTGA 3 cut(s) 163, 377, 410
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 4 cut(s) 74, 163, 272, 337
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 131, 176, 184, 403
HpyCH4IV ACGT 1 cut(s) 390
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 186, 195
HpyF3I CTNAG 2 cut(s) 126, 303
HpySE526I ACGT 1 cut(s) 390
Hsp92II CATG 2 cut(s) 359, 461
KpnI GGTACC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 129, 168, 288, 375
LguI GCTCTTC 1 cut(s) 378
LmnI GCTCC 3 cut(s) 266, 274, 451
LpnPI CCDG 6 cut(s) 60, 95, 138, 331, 358, 412
LweI GCATC 3 cut(s) 67, 323, 451
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 390
MalI GATC 4 cut(s) 131, 170, 290, 377
MboI GATC 4 cut(s) 129, 168, 288, 375
MboII GAAGA 4 cut(s) 178, 298, 395, 415
MfeI CAATTG 1 cut(s) 279
MflI RGATCY 2 cut(s) 129, 288
MhlI GDGCHC 4 cut(s) 271, 344, 390, 456
MluCI AATT 2 cut(s) 213, 279
MlyI GAGTC 2 cut(s) 29, 269
MnlI CCTC 5 cut(s) 43, 98, 256, 431, 455
MseI TTAA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 459
MspA1I CMGCKG 1 cut(s) 125
MspI CCGG 2 cut(s) 318, 399
MspR9I CCNGG 1 cut(s) 400
MunI CAATTG 1 cut(s) 279
MwoI GCNNNNNNNGC 3 cut(s) 110, 186, 195
NciI CCSGG 1 cut(s) 400
NdeII GATC 4 cut(s) 129, 168, 288, 375
NlaIII CATG 2 cut(s) 359, 461
NlaIV GGNNCC 2 cut(s) 157, 328
PciSI GCTCTTC 1 cut(s) 378
PleI GAGTC 2 cut(s) 28, 269
PpsI GAGTC 2 cut(s) 28, 269
Psp124BI GAGCTC 1 cut(s) 271
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 2 cut(s) 157, 328
PsrI GAACNNNNNNTAC 2 cut(s) 227, 259
PsuI RGATCY 2 cut(s) 129, 288
RsaI GTAC 2 cut(s) 17, 328
RsaNI GTAC 2 cut(s) 16, 327
RseI CAYNNNNRTG 1 cut(s) 459
SacI GAGCTC 1 cut(s) 271
SapI GCTCTTC 1 cut(s) 378
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 4 cut(s) 129, 168, 288, 375
SchI GAGTC 2 cut(s) 29, 269
ScrFI CCNGG 1 cut(s) 400
SduI GDGCHC 4 cut(s) 271, 344, 390, 456
SfaNI GCATC 3 cut(s) 67, 323, 451
SfcI CTRYAG 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 459
Sse9I AATT 2 cut(s) 213, 279
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 1 cut(s) 271
StyD4I CCNGG 1 cut(s) 398
TaiI ACGT 1 cut(s) 393
TaqI TCGA 1 cut(s) 75
TasI AATT 2 cut(s) 213, 279
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TscAI CASTG 2 cut(s) 328, 352
TspRI CASTG 2 cut(s) 328, 352
XagI CCTNNNNNAGG 1 cut(s) 425
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.