Rorug04G0191600

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000091
Physical Location & Seq
Forward (+)
33429227 .. 33431523
2297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0191600.1

Sequence Viewer

Length: 1473 bp
ATGGCGATGATGCAGCAGTTTGGGCGCACAAAGAGCGTGACGAAGCGTTCGTCGAAATACGTGGAGGAAGCTCTGTACGTCTGGCTCTTCAAAGACGGTGGCTCCGAGTTAAGCGTTTGTCAGAAGCTCAATGAATTCATCAAGAGCCGCAAGCGAGTCTTCAAATGGGAGGTCGGCGACACTCTCAAGAAGCTTCGCCAACGCAAGCTCTACTACCCTGCTCTTAAGCTCTCGGAAACTATGGCTAAAAGGGGAATGAACAAGACCGTTAGTGATCAGGCTATACATCTCGATCTTGTTGCCAAAGCTCGAGGAATTCCTGCTGCGGAAGATTATTTCAAGAATCTTCCTGAATCGTCCAAAAATCATCTCAGTTACGGGGCCCTGCTCAACTGTTACTGTAAGGAATTGATGACTGAAGAGGCTGAAGCTCTACTGGAGAAGATGAAGGAACTTAACCTTCCTTTGACCTCTATGCCTTATAACAGCCTTATGACGCTTTACTCAAAGACTGGGAAGCCAGAAAAGATCCCAGCCATCATACAAGAAATGAAGGGTTGCAATGTCATGCTCGATTCATATTCTTACAATGTCTGGATGCGGGCGCTAGCTGCTGTCGATGATATTTCTGGGGTGGAAAGGATTATTGATGAGATGAAGAGGGATGGACGAGTTGCCAGCGATTGGACAACGTATAGCAACTTAGCTTCCATCTATGTTGATGCCGGCATGCCTGAGAAGGCAGAAAATGCACTTAGTGAATTGGAGAAAAAAAATTCCCACCGAGATCTTTCAGCTTTCCAATTCCTTATTACATTGTATGGTCGAACCGGGAACCTGCTTGAAGTACATAGGGTATGGCGTTCCTTGAGGCTTGCTTTCCCTAAAACTGCAAACATAAGTTATCTGAATATGATCCAGGTGTTGGTTAACTTGAGAGATCTACCAGGTGCAGAGAAATGTTTCAGGGAATGGGAATCTCGGTGTTCAACCTATGATATTCGGGTAGCAAATGTTCTGATTGGAGCTTATGCTAAGGAGGGTATGCTAGAGAAGGCTAAGGAGCTCAAGGAACAGGCTCGTAGGAGAGGAGCCAAGCCTAATGCAAAAACCTGGGAGATCTTTGTGGACTATTATTTAAAGAATGCAGAATATGACTTGGCAGTTGAGTCTGTTGCCAATGCAATATCGATTGGTAAAGGGGATGGTGGGAAGTGGATACCATCACATGAGACCATCAAAACCTTGATGGAGCACTTTGAACAAACTAAGGATGTTGAAGGTGCAGAAGGTTTTCTGGAGATTTTGAAGAAGGCTACGGAGTCCTTAGGGGCTGAGGTGTTTGAATCATTAATTAGAACTTATGCCGCTGCTGGAAAGACGACTCCAGCCATGCGTCATCGATTGAAAATGGAGAATGTGGAGGTTAGTGAAGCCAGCAAGAAGTTGCTTGAGGCCATTTGTGTGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

490

Amino Acids

55.69

Weight (kDa)

8.82

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 125 - 153 3.2e-06 PPR repeat
PPR_2 PF13041 161 - 204 2.3e-07 PPR repeat family
PPR_2 PF13041 336 - 377 4.9e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 483
Acc36I ACCTGC 1 cut(s) 846
AccB7I CCANNNNNTGG 2 cut(s) 684, 925
AciI CCGC 4 cut(s) 148, 326, 601, 1368
AclWI GGATC 2 cut(s) 523, 910
AcsI RAATTY 3 cut(s) 134, 315, 775
AcuI CTGAAG 2 cut(s) 438, 447
AdeI CACNNNGTG 1 cut(s) 758
AfaI GTAC 2 cut(s) 77, 849
AfiI CCNNNNNNNGG 2 cut(s) 684, 925
AflII CTTAAG 1 cut(s) 224
AjnI CCWGG 3 cut(s) 918, 946, 1112
Alw21I GWGCWC 2 cut(s) 1068, 1257
Alw26I GTCTC 1 cut(s) 1226
AlwI GGATC 2 cut(s) 523, 910
Ama87I CYCGRG 1 cut(s) 309
AoxI GGCC 2 cut(s) 381, 1455
ApaI GGGCCC 1 cut(s) 385
ApeKI GCWGC 4 cut(s) 13, 323, 611, 1370
ApoI RAATTY 3 cut(s) 134, 315, 775
ArsI GACNNNNNNTTYG 6 cut(s) 31, 35, 63, 67, 156, 188
AseI ATTAAT 1 cut(s) 1352
Asp700I GAANNNNTTC 2 cut(s) 962, 1293
AspLEI GCGC 2 cut(s) 27, 607
AspS9I GGNCC 2 cut(s) 381, 382
AsuC2I CCSGG 1 cut(s) 832
AsuNHI GCTAGC 1 cut(s) 607
AvaI CYCGRG 1 cut(s) 309
AxyI CCTNAGG 1 cut(s) 1327
BaeGI GKGCMC 1 cut(s) 385
BanII GRGCYC 2 cut(s) 385, 1068
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 2 cut(s) 1068, 1257
BbvCI CCTCAGC 1 cut(s) 1335
BbvI GCAGC 4 cut(s) 25, 310, 598, 1357
BccI CCATC 7 cut(s) 545, 659, 719, 1199, 1231, 1243, 1244
BcgI CGANNNNNNTGC 2 cut(s) 281, 315
BciT130I CCWGG 3 cut(s) 920, 948, 1114
BciVI GTATCC 1 cut(s) 1212
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 1 cut(s) 1226
BfaI CTAG 2 cut(s) 608, 1049
BfoI RGCGCY 1 cut(s) 608
BfrI CTTAAG 1 cut(s) 224
BfuAI ACCTGC 1 cut(s) 846
BfuI GTATCC 1 cut(s) 1212
BglII AGATCT 3 cut(s) 787, 940, 1119
BisI GCNGC 6 cut(s) 14, 148, 324, 612, 1368, 1371
BlsI GCNGC 6 cut(s) 15, 149, 325, 613, 1369, 1372
Bme1390I CCNGG 4 cut(s) 832, 920, 948, 1114
BmeT110I CYCGRG 1 cut(s) 309
BmgT120I GGNCC 2 cut(s) 381, 382
BmiI GGNNCC 5 cut(s) 103, 382, 383, 836, 1093
BmrFI CCNGG 4 cut(s) 832, 920, 948, 1114
BmrI ACTGGG 1 cut(s) 522
BmsI GCATC 2 cut(s) 588, 712
BmtI GCTAGC 1 cut(s) 611
BmuI ACTGGG 1 cut(s) 522
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 3 cut(s) 458, 1319, 1371
Bpu10I CCTNAGC 3 cut(s) 1035, 1059, 1335
BpuEI CTTGAG 5 cut(s) 170, 889, 955, 1052, 1472
BpuMI CCSGG 1 cut(s) 832
Bsa29I ATCGAT 2 cut(s) 1190, 1402
BsaAI YACGTR 1 cut(s) 61
BsaI GGTCTC 1 cut(s) 1226
BsaJI CCNNGG 1 cut(s) 1113
BsaXI ACNNNNNCTCC 2 cut(s) 86, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 684, 925
Bse118I RCCGGY 1 cut(s) 725
Bse1I ACTGG 2 cut(s) 441, 517
Bse21I CCTNAGG 1 cut(s) 1327
Bse3DI GCAATG 1 cut(s) 568
BseBI CCWGG 3 cut(s) 920, 948, 1114
BseCI ATCGAT 2 cut(s) 1190, 1402
BseDI CCNNGG 1 cut(s) 1113
BseGI GGATG 4 cut(s) 603, 670, 1210, 1279
BseLI CCNNNNNNNGG 2 cut(s) 684, 925
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 3 cut(s) 385, 726, 1326
BseNI ACTGG 2 cut(s) 441, 517
BseRI GAGGAG 1 cut(s) 1104
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 4 cut(s) 25, 310, 598, 1357
BseYI CCCAGC 1 cut(s) 532
BsgI GTGCAG 2 cut(s) 972, 1305
BshFI GGCC 2 cut(s) 383, 1457
BshVI ATCGAT 2 cut(s) 1190, 1402
BsiHKAI GWGCWC 2 cut(s) 1068, 1257
BsiHKCI CYCGRG 1 cut(s) 309
BsiSI CCGG 2 cut(s) 726, 831
BslI CCNNNNNNNGG 2 cut(s) 684, 925
BsmAI GTCTC 1 cut(s) 1226
BsmI GAATGC 1 cut(s) 1150
BsnI GGCC 2 cut(s) 383, 1457
Bso31I GGTCTC 1 cut(s) 1226
BsoBI CYCGRG 1 cut(s) 309
Bsp120I GGGCCC 1 cut(s) 381
Bsp1286I GDGCHC 3 cut(s) 385, 1068, 1257
Bsp143I GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
BspACI CCGC 4 cut(s) 148, 326, 601, 1368
BspANI GGCC 2 cut(s) 383, 1457
BspCNI CTCAG 3 cut(s) 384, 727, 1327
BspDI ATCGAT 2 cut(s) 1190, 1402
BspLI GGNNCC 5 cut(s) 103, 382, 383, 836, 1093
BspMI ACCTGC 1 cut(s) 846
BspOI GCTAGC 1 cut(s) 611
BspPI GGATC 2 cut(s) 523, 910
BspQI GCTCTTC 1 cut(s) 92
BspTI CTTAAG 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 1226
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 725
BsrI ACTGG 2 cut(s) 441, 517
BssAI RCCGGY 1 cut(s) 725
BssECI CCNNGG 1 cut(s) 1113
BssMI GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
Bst2UI CCWGG 3 cut(s) 920, 948, 1114
Bst4CI ACNGT 4 cut(s) 98, 268, 395, 401
Bst6I CTCTTC 3 cut(s) 92, 414, 653
BstAFI CTTAAG 1 cut(s) 224
BstAPI GCANNNNNTGC 1 cut(s) 749
BstBAI YACGTR 1 cut(s) 61
BstC8I GCNNGC 9 cut(s) 152, 206, 603, 609, 679, 727, 731, 876, 1438
BstDEI CTNAG 9 cut(s) 371, 703, 735, 755, 1035, 1059, 1269, 1327, 1335
BstF5I GGATG 4 cut(s) 603, 670, 1210, 1279
BstH2I RGCGCY 1 cut(s) 608
BstHHI GCGC 2 cut(s) 27, 607
BstKTI GATC 7 cut(s) 277, 295, 531, 790, 918, 943, 1122
BstMAI GTCTC 1 cut(s) 1226
BstMBI GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
BstMWI GCNNNNNNNGC 4 cut(s) 22, 33, 611, 749
BstNI CCWGG 3 cut(s) 920, 948, 1114
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 4 cut(s) 830, 918, 946, 1112
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 4 cut(s) 25, 310, 598, 1357
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 4 cut(s) 528, 787, 940, 1119
BstXI CCANNNNNNTGG 1 cut(s) 1465
BstYI RGATCY 4 cut(s) 528, 787, 940, 1119
Bsu15I ATCGAT 2 cut(s) 1190, 1402
Bsu36I CCTNAGG 1 cut(s) 1327
BsuI GTATCC 1 cut(s) 1212
BsuRI GGCC 2 cut(s) 383, 1457
BsuTUI ATCGAT 2 cut(s) 1190, 1402
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 4 cut(s) 603, 670, 1210, 1279
BveI ACCTGC 1 cut(s) 846
Cac8I GCNNGC 9 cut(s) 152, 206, 603, 609, 679, 727, 731, 876, 1438
CfoI GCGC 2 cut(s) 27, 607
Cfr10I RCCGGY 1 cut(s) 725
Cfr13I GGNCC 2 cut(s) 381, 382
ClaI ATCGAT 2 cut(s) 1190, 1402
CseI GACGC 2 cut(s) 505, 1385
CsiI ACCWGGT 1 cut(s) 946
Csp6I GTAC 2 cut(s) 76, 848
CspCI CAANNNNNGTGG 2 cut(s) 79, 114
CviAII CATG 4 cut(s) 568, 730, 1229, 1393
CviQI GTAC 2 cut(s) 76, 848
DdeI CTNAG 9 cut(s) 371, 703, 735, 755, 1035, 1059, 1269, 1327, 1335
DpnI GATC 7 cut(s) 276, 294, 530, 789, 917, 942, 1121
DpnII GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
DraI TTTAAA 1 cut(s) 1140
DraIII CACNNNGTG 1 cut(s) 758
Eam1104I CTCTTC 3 cut(s) 92, 414, 653
EarI CTCTTC 3 cut(s) 92, 414, 653
Ecl136II GAGCTC 1 cut(s) 1066
Eco24I GRGCYC 2 cut(s) 385, 1068
Eco31I GGTCTC 1 cut(s) 1226
Eco53kI GAGCTC 1 cut(s) 1066
Eco57I CTGAAG 2 cut(s) 438, 447
Eco81I CCTNAGG 1 cut(s) 1327
Eco88I CYCGRG 1 cut(s) 309
EcoICRI GAGCTC 1 cut(s) 1066
EcoO109I RGGNCCY 2 cut(s) 381, 382
EcoRI GAATTC 2 cut(s) 134, 315
EcoRII CCWGG 3 cut(s) 918, 946, 1112
EcoT38I GRGCYC 2 cut(s) 385, 1068
FaeI CATG 4 cut(s) 571, 733, 1232, 1396
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FatI CATG 4 cut(s) 567, 729, 1228, 1392
FauI CCCGC 1 cut(s) 594
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 6 cut(s) 14, 148, 324, 612, 1368, 1371
FokI GGATG 4 cut(s) 610, 677, 1217, 1286
FriOI GRGCYC 2 cut(s) 385, 1068
Fsp4HI GCNGC 6 cut(s) 14, 148, 324, 612, 1368, 1371
FspBI CTAG 2 cut(s) 608, 1049
GlaI GCGC 2 cut(s) 26, 606
GluI GCNGC 6 cut(s) 14, 148, 324, 612, 1368, 1371
GsaI CCCAGC 1 cut(s) 536
GsuI CTGGAG 3 cut(s) 458, 1319, 1371
HaeII RGCGCY 1 cut(s) 608
HaeIII GGCC 2 cut(s) 383, 1457
HapII CCGG 2 cut(s) 726, 831
HgaI GACGC 2 cut(s) 505, 1385
HhaI GCGC 2 cut(s) 27, 607
Hin1II CATG 4 cut(s) 571, 733, 1232, 1396
Hin6I GCGC 2 cut(s) 25, 605
HinP1I GCGC 2 cut(s) 25, 605
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 191
HinfI GANTC 9 cut(s) 156, 343, 353, 575, 977, 1169, 1322, 1346, 1384
HpaI GTTAAC 1 cut(s) 931
HpaII CCGG 2 cut(s) 726, 831
Hpy166II GTNNAC 2 cut(s) 931, 1129
Hpy188I TCNGA 5 cut(s) 106, 123, 235, 909, 1020
Hpy188III TCNNGA 7 cut(s) 142, 187, 290, 340, 350, 595, 1298
Hpy8I GTNNAC 2 cut(s) 931, 1129
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 8 cut(s) 442, 470, 547, 733, 1048, 1274, 1283, 1306
HpyCH4III ACNGT 4 cut(s) 98, 268, 395, 401
HpyCH4IV ACGT 3 cut(s) 60, 78, 692
HpyCH4V TGCA 9 cut(s) 13, 561, 752, 893, 953, 1106, 1148, 1184, 1286
HpyF10VI GCNNNNNNNGC 4 cut(s) 22, 33, 611, 749
HpyF3I CTNAG 9 cut(s) 371, 703, 735, 755, 1035, 1059, 1269, 1327, 1335
HpySE526I ACGT 3 cut(s) 60, 78, 692
Hsp92II CATG 4 cut(s) 571, 733, 1232, 1396
HspAI GCGC 2 cut(s) 25, 605
KroI GCCGGC 1 cut(s) 725
KroNI GCCGGC 1 cut(s) 727
Ksp22I TGATCA 1 cut(s) 274
KspAI GTTAAC 1 cut(s) 931
Kzo9I GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 5 cut(s) 107, 1025, 1063, 1091, 1252
Lsp1109I GCAGC 4 cut(s) 25, 310, 598, 1357
LweI GCATC 2 cut(s) 588, 712
MabI ACCWGGT 1 cut(s) 946
MaeI CTAG 2 cut(s) 608, 1049
MaeII ACGT 3 cut(s) 60, 78, 692
MaeIII GTNAC 3 cut(s) 37, 374, 395
MalI GATC 7 cut(s) 276, 294, 530, 789, 917, 942, 1121
MboI GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
MboII GAAGA 8 cut(s) 79, 151, 338, 341, 431, 454, 670, 1321
MflI RGATCY 4 cut(s) 528, 787, 940, 1119
MhlI GDGCHC 3 cut(s) 385, 1068, 1257
MluCI AATT 7 cut(s) 134, 315, 407, 761, 775, 803, 1353
MlyI GAGTC 4 cut(s) 165, 1178, 1331, 1378
MroNI GCCGGC 1 cut(s) 725
MroXI GAANNNNTTC 2 cut(s) 962, 1293
MseI TTAA 6 cut(s) 110, 225, 456, 930, 1139, 1352
MslI CAYNNNNRTG 1 cut(s) 1463
MspA1I CMGCKG 1 cut(s) 1370
MspCI CTTAAG 1 cut(s) 224
MspI CCGG 2 cut(s) 726, 831
MspR9I CCNGG 4 cut(s) 832, 920, 948, 1114
Mva1269I GAATGC 1 cut(s) 1150
MvaI CCWGG 3 cut(s) 920, 948, 1114
MwoI GCNNNNNNNGC 4 cut(s) 22, 33, 611, 749
NaeI GCCGGC 1 cut(s) 727
NciI CCSGG 1 cut(s) 832
NdeII GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
NgoMIV GCCGGC 1 cut(s) 725
NheI GCTAGC 1 cut(s) 607
NlaIII CATG 4 cut(s) 571, 733, 1232, 1396
NlaIV GGNNCC 5 cut(s) 103, 382, 383, 836, 1093
NmuCI GTSAC 1 cut(s) 37
NspI RCATGY 1 cut(s) 733
PaeI GCATGC 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 309
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 102
PctI GAATGC 1 cut(s) 1150
PdiI GCCGGC 1 cut(s) 727
PdmI GAANNNNTTC 2 cut(s) 962, 1293
PfeI GAWTC 5 cut(s) 343, 353, 575, 977, 1346
PflMI CCANNNNNTGG 2 cut(s) 684, 925
PkrI GCNGC 6 cut(s) 15, 149, 325, 613, 1369, 1372
PleI GAGTC 4 cut(s) 164, 1177, 1330, 1378
PpsI GAGTC 4 cut(s) 164, 1177, 1330, 1378
Ppu21I YACGTR 1 cut(s) 61
PshBI ATTAAT 1 cut(s) 1352
PsiI TTATAA 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 1068
Psp6I CCWGG 3 cut(s) 918, 946, 1112
PspFI CCCAGC 1 cut(s) 532
PspGI CCWGG 3 cut(s) 918, 946, 1112
PspN4I GGNNCC 5 cut(s) 103, 382, 383, 836, 1093
PspOMI GGGCCC 1 cut(s) 381
PspPI GGNCC 2 cut(s) 381, 382
PspXI VCTCGAGB 1 cut(s) 309
PsrI GAACNNNNNNTAC 2 cut(s) 999, 1031
PsuI RGATCY 4 cut(s) 528, 787, 940, 1119
RsaI GTAC 2 cut(s) 77, 849
RsaNI GTAC 2 cut(s) 76, 848
RseI CAYNNNNRTG 1 cut(s) 1463
SacI GAGCTC 1 cut(s) 1068
SapI GCTCTTC 1 cut(s) 92
SaqAI TTAA 6 cut(s) 110, 225, 456, 930, 1139, 1352
SatI GCNGC 6 cut(s) 14, 148, 324, 612, 1368, 1371
Sau3AI GATC 7 cut(s) 274, 292, 528, 787, 915, 940, 1119
Sau96I GGNCC 2 cut(s) 381, 382
SchI GAGTC 4 cut(s) 165, 1178, 1331, 1378
ScrFI CCNGG 4 cut(s) 832, 920, 948, 1114
SduI GDGCHC 3 cut(s) 385, 1068, 1257
SexAI ACCWGGT 1 cut(s) 946
SfaNI GCATC 2 cut(s) 588, 712
Sfr274I CTCGAG 1 cut(s) 309
SlaI CTCGAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 1463
SmlI CTYRAG 7 cut(s) 185, 224, 309, 868, 934, 1067, 1451
SmoI CTYRAG 7 cut(s) 185, 224, 309, 868, 934, 1067, 1451
SphI GCATGC 1 cut(s) 733
Sse9I AATT 7 cut(s) 134, 315, 407, 761, 775, 803, 1353
SsiI CCGC 4 cut(s) 148, 326, 601, 1368
SspMI CTAG 2 cut(s) 608, 1049
SstI GAGCTC 1 cut(s) 1068
StyD4I CCNGG 4 cut(s) 830, 918, 946, 1112
TaaI ACNGT 4 cut(s) 98, 268, 395, 401
TaiI ACGT 3 cut(s) 63, 81, 695
TaqI TCGA 8 cut(s) 53, 291, 310, 573, 618, 826, 1190, 1402
TasI AATT 7 cut(s) 134, 315, 407, 761, 775, 803, 1353
TatI WGTACW 1 cut(s) 847
TauI GCSGC 2 cut(s) 150, 1370
TfiI GAWTC 5 cut(s) 343, 353, 575, 977, 1346
Tru1I TTAA 6 cut(s) 110, 225, 456, 930, 1139, 1352
Tru9I TTAA 6 cut(s) 110, 225, 456, 930, 1139, 1352
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 4 cut(s) 13, 323, 611, 1370
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 7 cut(s) 127, 147, 272, 461, 566, 567, 671
TspGWI ACGGA 1 cut(s) 1334
Van91I CCANNNNNTGG 2 cut(s) 684, 925
Vha464I CTTAAG 1 cut(s) 224
VspI ATTAAT 1 cut(s) 1352
XapI RAATTY 3 cut(s) 134, 315, 775
XceI RCATGY 1 cut(s) 733
XhoI CTCGAG 1 cut(s) 309
XmnI GAANNNNTTC 2 cut(s) 962, 1293
XspI CTAG 2 cut(s) 608, 1049
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.