Rorug04G0193300

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
33706521 .. 33707268
748 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0193300.1

Sequence Viewer

Length: 540 bp
ATGGAGGGAAGTTCTAGCAGTGATGAGTTGTCCAAGATCAGCCTGAGGCCATTGGCTCTTTCGGACATCGATGATTTCATGGTCTGGGCCACTGATGAAAAAGTGCCTCGCTTCTGCACTTGGGAGCCTTACACCAGCAAAGAAGATGGCATTAAATTCATCAAGGAACAGGTTCTCCCACACCCCTGGTTCAGGGCAATCTGCCTAGACAACAAGCCAATTGGCGCCATTTCGGTGTCCTCAAAATCGGGGAATGATCGTTGTAGAGGTGAACTCGGCTATGTTTTGGGGTCCAAGTACTGGGGGAAAGGGATTGCAACACAAGCTGTGAAAATGGTGGCTGATACTATATTTAAAGAATGGACTCATTTGGAGAGACTTGAAGCTCTTGTTGATGTGAACAATGTGCGATCGCAGAGGGTTCTGGAGAAGGCCGGGTTCCTGAAGGAAGGTGTTCTCAGAAAATATGAAGTTTTGAAGGGAAGAACTTGGGATATAGTGATGTATAGTCTTCTTTCTACAGATCGATGTCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

179

Amino Acids

20.37

Weight (kDa)

7.63

Isoelectric Point (pI)

12.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acetyltransf_3 PF13302 13 - 147 4.8e-26 Acetyltransferase (GNAT) domain
Acetyltransf_1 PF00583 41 - 147 2.2e-12 Acetyltransferase (GNAT) family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 224
AccB7I CCANNNNNTGG 1 cut(s) 300
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 464
AcyI GRCGYC 1 cut(s) 225
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 192, 300
AgsI TTSAA 2 cut(s) 383, 478
AjnI CCWGG 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 159, 191
AluBI AGCT 2 cut(s) 326, 386
AluI AGCT 2 cut(s) 326, 386
Alw26I GTCTC 1 cut(s) 370
AoxI GGCC 3 cut(s) 47, 87, 432
ApoI RAATTY 1 cut(s) 155
AsiSI GCGATCGC 1 cut(s) 413
Asp700I GAANNNNTTC 2 cut(s) 171, 453
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 87, 291
AsuC2I CCSGG 1 cut(s) 436
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 291
AxyI CCTNAGG 1 cut(s) 44
BanI GGYRCC 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 503
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 187
BcnI CCSGG 1 cut(s) 436
BcoDI GTCTC 1 cut(s) 370
BfaI CTAG 2 cut(s) 15, 206
BfmI CTRYAG 1 cut(s) 519
BfoI RGCGCY 1 cut(s) 228
BmcAI AGTACT 1 cut(s) 299
Bme1390I CCNGG 2 cut(s) 187, 436
Bme18I GGWCC 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 87, 291
BmiI GGNNCC 4 cut(s) 126, 226, 292, 440
BmrFI CCNGG 2 cut(s) 187, 436
BmrI ACTGGG 1 cut(s) 310
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 503
BplI GAGNNNNNCTC 2 cut(s) 258, 290
BpmI CTGGAG 1 cut(s) 446
BpuMI CCSGG 1 cut(s) 436
Bsa29I ATCGAT 2 cut(s) 69, 526
BsaHI GRCGYC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 185
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 192, 300
Bse1I ACTGG 1 cut(s) 305
Bse21I CCTNAGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 187
BseCI ATCGAT 2 cut(s) 69, 526
BseDI CCNNGG 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 192, 300
BseMII CTCAG 2 cut(s) 35, 472
BseNI ACTGG 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 100
Bsh1285I CGRYCG 1 cut(s) 413
BshFI GGCC 3 cut(s) 49, 89, 434
BshNI GGYRCC 1 cut(s) 224
BshVI ATCGAT 2 cut(s) 69, 526
BsiEI CGRYCG 1 cut(s) 413
BsiSI CCGG 1 cut(s) 435
BslI CCNNNNNNNGG 2 cut(s) 192, 300
BsmAI GTCTC 1 cut(s) 370
BsnI GGCC 3 cut(s) 49, 89, 434
Bsp143I GATC 4 cut(s) 36, 256, 410, 523
BspANI GGCC 3 cut(s) 49, 89, 434
BspCNI CTCAG 2 cut(s) 36, 471
BspDI ATCGAT 2 cut(s) 69, 526
BspLI GGNNCC 4 cut(s) 126, 226, 292, 440
BspT107I GGYRCC 1 cut(s) 224
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 1 cut(s) 185
BssMI GATC 4 cut(s) 36, 256, 410, 523
BssNI GRCGYC 1 cut(s) 225
Bst2UI CCWGG 1 cut(s) 187
BstACI GRCGYC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 44, 458
BstENI CCTNNNNNAGG 1 cut(s) 190
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 4 cut(s) 39, 259, 413, 526
BstMAI GTCTC 1 cut(s) 370
BstMBI GATC 4 cut(s) 36, 256, 410, 523
BstMCI CGRYCG 1 cut(s) 413
BstMWI GCNNNNNNNGC 1 cut(s) 323
BstNI CCWGG 1 cut(s) 187
BstSCI CCNGG 2 cut(s) 185, 434
BstSFI CTRYAG 1 cut(s) 519
BstV2I GAAGAC 1 cut(s) 503
BstXI CCANNNNNNTGG 1 cut(s) 186
Bsu15I ATCGAT 2 cut(s) 69, 526
Bsu36I CCTNAGG 1 cut(s) 44
BsuRI GGCC 3 cut(s) 49, 89, 434
BsuTUI ATCGAT 2 cut(s) 69, 526
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 90
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 87, 291
ClaI ATCGAT 2 cut(s) 69, 526
Csp6I GTAC 1 cut(s) 298
CviAII CATG 1 cut(s) 79
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 2 cut(s) 44, 458
DinI GGCGCC 1 cut(s) 226
DpnI GATC 4 cut(s) 38, 258, 412, 525
DpnII GATC 4 cut(s) 36, 256, 410, 523
DraI TTTAAA 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 291
Eco57I CTGAAG 1 cut(s) 464
Eco81I CCTNAGG 1 cut(s) 44
EcoNI CCTNNNNNAGG 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 185
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
FaeI CATG 1 cut(s) 82
FaiI YATR 6 cut(s) 80, 282, 350, 468, 497, 507
FatI CATG 1 cut(s) 78
FspBI CTAG 2 cut(s) 15, 206
GlaI GCGC 1 cut(s) 226
GsuI CTGGAG 1 cut(s) 446
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 3 cut(s) 49, 89, 434
HapII CCGG 1 cut(s) 435
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 225
Hin1II CATG 1 cut(s) 82
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 1 cut(s) 364
HpaII CCGG 1 cut(s) 435
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 2 cut(s) 272, 400
Hpy188I TCNGA 2 cut(s) 64, 461
Hpy188III TCNNGA 2 cut(s) 425, 442
Hpy8I GTNNAC 2 cut(s) 272, 400
HpyAV CCTTC 4 cut(s) 424, 439, 443, 472
HpyCH4V TGCA 2 cut(s) 117, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 44, 458
Hsp92I GRCGYC 1 cut(s) 225
Hsp92II CATG 1 cut(s) 82
HspAI GCGC 1 cut(s) 225
KasI GGCGCC 1 cut(s) 224
Kzo9I GATC 4 cut(s) 36, 256, 410, 523
LmnI GCTCC 1 cut(s) 124
MaeI CTAG 2 cut(s) 15, 206
MalI GATC 4 cut(s) 38, 258, 412, 525
MboI GATC 4 cut(s) 36, 256, 410, 523
MboII GAAGA 3 cut(s) 155, 495, 503
MfeI CAATTG 1 cut(s) 219
MluCI AATT 2 cut(s) 155, 219
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 1 cut(s) 358
MnlI CCTC 5 cut(s) 39, 117, 250, 260, 411
MroXI GAANNNNTTC 2 cut(s) 171, 453
MseI TTAA 2 cut(s) 153, 354
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 1 cut(s) 435
MspR9I CCNGG 2 cut(s) 187, 436
MunI CAATTG 1 cut(s) 219
MvaI CCWGG 1 cut(s) 187
MwoI GCNNNNNNNGC 1 cut(s) 323
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 1 cut(s) 436
NdeII GATC 4 cut(s) 36, 256, 410, 523
NlaIII CATG 1 cut(s) 82
NlaIV GGNNCC 4 cut(s) 126, 226, 292, 440
NmeAIII GCCGAG 1 cut(s) 255
PdmI GAANNNNTTC 2 cut(s) 171, 453
PflMI CCANNNNNTGG 1 cut(s) 300
Ple19I CGATCG 1 cut(s) 413
PleI GAGTC 1 cut(s) 358
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 1 cut(s) 358
Psp6I CCWGG 1 cut(s) 185
PspGI CCWGG 1 cut(s) 185
PspN4I GGNNCC 4 cut(s) 126, 226, 292, 440
PspPI GGNCC 2 cut(s) 87, 291
PvuI CGATCG 1 cut(s) 413
RgaI GCGATCGC 1 cut(s) 413
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 233
SaqAI TTAA 2 cut(s) 153, 354
Sau3AI GATC 4 cut(s) 36, 256, 410, 523
Sau96I GGNCC 2 cut(s) 87, 291
ScaI AGTACT 1 cut(s) 299
SchI GAGTC 1 cut(s) 358
ScrFI CCNGG 2 cut(s) 187, 436
SetI ASST 5 cut(s) 174, 271, 328, 388, 454
SfaAI GCGATCGC 1 cut(s) 413
SfcI CTRYAG 1 cut(s) 519
SfoI GGCGCC 1 cut(s) 226
SgfI GCGATCGC 1 cut(s) 413
SinI GGWCC 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 155, 219
SspDI GGCGCC 1 cut(s) 224
SspMI CTAG 2 cut(s) 15, 206
StyD4I CCNGG 2 cut(s) 185, 434
TaqI TCGA 2 cut(s) 69, 526
TasI AATT 2 cut(s) 155, 219
TatI WGTACW 1 cut(s) 297
Tru1I TTAA 2 cut(s) 153, 354
Tru9I TTAA 2 cut(s) 153, 354
TscAI CASTG 2 cut(s) 25, 97
TspDTI ATGAA 4 cut(s) 67, 111, 148, 483
TspRI CASTG 2 cut(s) 25, 97
Van91I CCANNNNNTGG 1 cut(s) 300
VpaK11BI GGWCC 1 cut(s) 291
XagI CCTNNNNNAGG 1 cut(s) 190
XapI RAATTY 1 cut(s) 155
XmnI GAANNNNTTC 2 cut(s) 171, 453
XspI CTAG 2 cut(s) 15, 206
ZrmI AGTACT 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.