RchiOBHm_Chr4g0410081

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000091
Physical Location & Seq
Forward (+)
33744298 .. 33744779
482 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38105

Sequence Viewer

Length: 435 bp
ATGGGTGTCTTCACTTATGAATCTGAGTTCACCTCTGTCATTCCACCAGCTAGGTTGTTCAAGGCCTTTGTCCTTGACGCCGACAACCTCATCCCCAAGATTGCTCCCCAAGCAGTTAAGAGTGCCGAGATTCTTGAAGGTGATGGAGGTGTTGGAACTATCAAGAAGATCAACCTCGGTGAAGGAAGTGAATACAGCTATTACAGCATGATTGAAGGAGATGCTATCTCAGACAAAATTGAGAAGATCTCCTATGAGACTAAGTTGGCGGCATCTTCCGATGGAGGCTCCATCATCAAGAGCACCAGCAACTACCACACCAAGGGTGACGTGGAGATCAAGGAAGAGCATGTTAAGGCTGGCAAAGAAAGGGCCGCCGGTTTGTTCAAGATTATTGAGAGCCACCTTCTAGCGAACCCTGATGGTTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

144

Amino Acids

15.55

Weight (kDa)

5.08

Isoelectric Point (pI)

25.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bet_v_1 PF00407 1 - 64 1.8e-07 Pathogenesis-related protein Bet v 1 family
Bet_v_1 PF00407 68 - 139 1.5e-06 Pathogenesis-related protein Bet v 1 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 269, 375
AcyI GRCGYC 1 cut(s) 78
AfiI CCNNNNNNNGG 1 cut(s) 322
AgsI TTSAA 4 cut(s) 61, 137, 215, 388
AjiI CACGTC 1 cut(s) 331
AluBI AGCT 2 cut(s) 50, 198
AluI AGCT 2 cut(s) 50, 198
Alw21I GWGCWC 1 cut(s) 305
Alw26I GTCTC 1 cut(s) 251
AoxI GGCC 2 cut(s) 63, 372
AspS9I GGNCC 1 cut(s) 372
AsuHPI GGTGA 4 cut(s) 22, 152, 191, 338
Bbv12I GWGCWC 1 cut(s) 305
BccI CCATC 4 cut(s) 137, 275, 299, 416
BcoDI GTCTC 1 cut(s) 251
BfaI CTAG 2 cut(s) 51, 410
BglII AGATCT 1 cut(s) 246
BisI GCNGC 2 cut(s) 270, 375
BlsI GCNGC 2 cut(s) 271, 376
BmgBI CACGTC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 372
BmiI GGNNCC 1 cut(s) 289
BmsI GCATC 2 cut(s) 211, 281
BplI GAGNNNNNCTC 4 cut(s) 17, 49, 233, 265
BsaHI GRCGYC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 175, 321
Bsc4I CCNNNNNNNGG 1 cut(s) 322
Bse118I RCCGGY 1 cut(s) 377
BseDI CCNNGG 2 cut(s) 175, 321
BseGI GGATG 1 cut(s) 90
BseLI CCNNNNNNNGG 1 cut(s) 322
BseMII CTCAG 2 cut(s) 15, 243
BshFI GGCC 2 cut(s) 65, 374
BsiHKAI GWGCWC 1 cut(s) 305
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 322
BsmAI GTCTC 1 cut(s) 251
BsnI GGCC 2 cut(s) 65, 374
Bsp1286I GDGCHC 1 cut(s) 305
Bsp143I GATC 3 cut(s) 168, 246, 336
BspACI CCGC 2 cut(s) 269, 375
BspANI GGCC 2 cut(s) 65, 374
BspCNI CTCAG 2 cut(s) 16, 242
BspLI GGNNCC 1 cut(s) 289
BspQI GCTCTTC 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 2 cut(s) 175, 321
BssMI GATC 3 cut(s) 168, 246, 336
BssNI GRCGYC 1 cut(s) 78
BssT1I CCWWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 339
BstACI GRCGYC 1 cut(s) 78
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 3 cut(s) 24, 229, 261
BstF5I GGATG 1 cut(s) 90
BstKTI GATC 3 cut(s) 171, 249, 339
BstMAI GTCTC 1 cut(s) 251
BstMBI GATC 3 cut(s) 168, 246, 336
BstMWI GCNNNNNNNGC 2 cut(s) 110, 204
BstNSI RCATGY 1 cut(s) 353
BstX2I RGATCY 1 cut(s) 246
BstYI RGATCY 1 cut(s) 246
BsuRI GGCC 2 cut(s) 65, 374
BtrI CACGTC 1 cut(s) 331
BtsCI GGATG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 377
Cfr13I GGNCC 1 cut(s) 372
CseI GACGC 1 cut(s) 86
CviAII CATG 2 cut(s) 208, 350
CviJI RGCY 7 cut(s) 50, 65, 198, 288, 359, 374, 402
CviKI_1 RGCY 7 cut(s) 50, 65, 198, 288, 359, 374, 402
DdeI CTNAG 3 cut(s) 24, 229, 261
DpnI GATC 3 cut(s) 170, 248, 338
DpnII GATC 3 cut(s) 168, 246, 336
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 321
Eco147I AGGCCT 1 cut(s) 65
EcoT14I CCWWGG 1 cut(s) 321
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 2 cut(s) 211, 353
FaiI YATR 4 cut(s) 18, 209, 255, 351
FatI CATG 2 cut(s) 207, 349
Fnu4HI GCNGC 2 cut(s) 270, 375
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 2 cut(s) 270, 375
FspBI CTAG 2 cut(s) 51, 410
GluI GCNGC 2 cut(s) 270, 375
HaeIII GGCC 2 cut(s) 65, 374
HapII CCGG 1 cut(s) 378
HgaI GACGC 1 cut(s) 86
Hin1I GRCGYC 1 cut(s) 78
Hin1II CATG 2 cut(s) 211, 353
HinfI GANTC 2 cut(s) 20, 130
HpaII CCGG 1 cut(s) 378
HphI GGTGA 4 cut(s) 22, 152, 191, 338
Hpy166II GTNNAC 1 cut(s) 30
Hpy188I TCNGA 3 cut(s) 25, 232, 280
Hpy188III TCNNGA 4 cut(s) 134, 163, 298, 388
Hpy8I GTNNAC 1 cut(s) 30
HpyAV CCTTC 4 cut(s) 131, 176, 209, 416
HpyCH4IV ACGT 1 cut(s) 330
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 204
HpyF3I CTNAG 3 cut(s) 24, 229, 261
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 78
Hsp92II CATG 2 cut(s) 211, 353
Kzo9I GATC 3 cut(s) 168, 246, 336
LguI GCTCTTC 1 cut(s) 339
LmnI GCTCC 2 cut(s) 109, 293
LpnPI CCDG 4 cut(s) 60, 319, 345, 391
LweI GCATC 2 cut(s) 211, 281
MaeI CTAG 2 cut(s) 51, 410
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 326, 425
MalI GATC 3 cut(s) 170, 248, 338
MboI GATC 3 cut(s) 168, 246, 336
MboII GAAGA 4 cut(s) 178, 256, 267, 356
MflI RGATCY 1 cut(s) 246
MhlI GDGCHC 1 cut(s) 305
MluCI AATT 1 cut(s) 237
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 43, 98, 140, 185, 278
MseI TTAA 2 cut(s) 117, 354
MspI CCGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 110, 204
NdeII GATC 3 cut(s) 168, 246, 336
NlaIII CATG 2 cut(s) 211, 353
NlaIV GGNNCC 1 cut(s) 289
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 326
NspI RCATGY 1 cut(s) 353
PceI AGGCCT 1 cut(s) 65
PciSI GCTCTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 20, 130
PkrI GCNGC 2 cut(s) 271, 376
PspN4I GGNNCC 1 cut(s) 289
PspPI GGNCC 1 cut(s) 372
PsuI RGATCY 1 cut(s) 246
SapI GCTCTTC 1 cut(s) 339
SaqAI TTAA 2 cut(s) 117, 354
SatI GCNGC 2 cut(s) 270, 375
Sau3AI GATC 3 cut(s) 168, 246, 336
Sau96I GGNCC 1 cut(s) 372
SduI GDGCHC 1 cut(s) 305
SfaNI GCATC 2 cut(s) 211, 281
Sse9I AATT 1 cut(s) 237
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 2 cut(s) 269, 375
SspMI CTAG 2 cut(s) 51, 410
StuI AGGCCT 1 cut(s) 65
StyI CCWWGG 1 cut(s) 321
TaiI ACGT 1 cut(s) 333
TasI AATT 1 cut(s) 237
TauI GCSGC 2 cut(s) 272, 377
TfiI GAWTC 2 cut(s) 20, 130
Tru1I TTAA 2 cut(s) 117, 354
Tru9I TTAA 2 cut(s) 117, 354
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 33
XceI RCATGY 1 cut(s) 353
XcmI CCANNNNNNNNNTGG 1 cut(s) 328
XspI CTAG 2 cut(s) 51, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.