Rorug04G0191800

Major allergen Pru

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
33480594 .. 33483644
3051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0191800.1

Sequence Viewer

Length: 783 bp
ATGTGTCTCAGTCGCGGTATCAAGGAGGTGTTGCCACCGCTTGAGTCCCATAAATCAGCTCTACAATCAATTAGAGGAGTTGTGAGTTTGAATTGTGCTCAGCAAGAACATGAGGATGATCATCTCTTTCGAAACAAATCATTGGATACTGTTGTGCAGGAGAATGAATGTGAATGTGTATTGAACACTGAGCCATCAATATCAGAATTTTCGATCCAGTATTGCCCTTCTTCTCCCTTAAATAGAAGTCATGAGACTAATTTAAGTCATGAAGTTGCTTCCAGTTCCATTTTCATATGTTCAACAGATCAACCTTCAGCTACAATACCAAGCTCACAAAACAAGAATGGTTTTAGTCCCCATGTTGCTTCCAGTTCCAGTGTCGTAGTTTCAACAGATCAACTTTCAACTTCAATACAAACTACAACTACGTTGACTTCTATTAGGAAGCTGAGTCGTAAGGAAAGACGACGTAATGGTAAGCAGAAGAAGCGGACGATGGCTGATATTTTAGATGTAGCTAAGCCATGTACAGCAGAGGATCTTCTTAGGATTAAAAGATTGTGCTGTGTTTCAAGCAACCCTCTTGAGCTGGGGGGTGAAGGAACGAAACGTATCATTGATGATGAGAATAATTGTGAATCTGTCCTAACCAAGGATTGCTCAAGTGAAAAACTTGAAAGAGATTGTGAAGCAGCTAATCTCAGTATGCAATCCAGACAAAGATTGGTGGTGAAGTTCAATTTTAGCGGACGTGAATCCAATGTCCAAAGCAAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

260

Amino Acids

28.81

Weight (kDa)

6.98

Isoelectric Point (pI)

57.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 15
AciI CCGC 4 cut(s) 15, 38, 493, 750
AclWI GGATC 2 cut(s) 208, 549
AcsI RAATTY 1 cut(s) 206
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 532
AfiI CCNNNNNNNGG 1 cut(s) 655
AgsI TTSAA 9 cut(s) 91, 184, 303, 393, 408, 414, 576, 680, 742
AjiI CACGTC 1 cut(s) 755
AluBI AGCT 7 cut(s) 59, 320, 333, 451, 521, 592, 698
AluI AGCT 7 cut(s) 59, 320, 333, 451, 521, 592, 698
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 11, 248
AlwI GGATC 2 cut(s) 208, 549
ApeKI GCWGC 1 cut(s) 695
ApoI RAATTY 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 611, 745
AsuII TTCGAA 1 cut(s) 130
BaeI ACNNNNGTAYC 2 cut(s) 138, 171
Bbv12I GWGCWC 1 cut(s) 100
BbvI GCAGC 1 cut(s) 707
BccI CCATC 2 cut(s) 202, 493
BciVI GTATCC 1 cut(s) 139
BclI TGATCA 1 cut(s) 118
BcoDI GTCTC 2 cut(s) 11, 248
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 1 cut(s) 696
BlpI GCTNAGC 2 cut(s) 99, 522
BlsI GCNGC 1 cut(s) 697
BmgBI CACGTC 1 cut(s) 755
Bpu1102I GCTNAGC 2 cut(s) 99, 522
Bpu14I TTCGAA 1 cut(s) 130
BpuEI CTTGAG 3 cut(s) 62, 608, 649
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 654
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 4 cut(s) 217, 282, 372, 378
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 654
BseGI GGATG 1 cut(s) 121
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 655
BseMII CTCAG 5 cut(s) 22, 113, 180, 443, 718
BseNI ACTGG 4 cut(s) 217, 282, 372, 378
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 1 cut(s) 707
BseYI CCCAGC 1 cut(s) 592
BsgI GTGCAG 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 15
BsiHKAI GWGCWC 1 cut(s) 100
BslFI GGGAC 2 cut(s) 31, 342
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 2 cut(s) 11, 248
BsmFI GGGAC 2 cut(s) 31, 342
Bsp119I TTCGAA 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 100
Bsp1407I TGTACA 1 cut(s) 530
Bsp143I GATC 5 cut(s) 118, 213, 307, 397, 541
Bsp1720I GCTNAGC 2 cut(s) 99, 522
BspACI CCGC 4 cut(s) 15, 38, 493, 750
BspCNI CTCAG 5 cut(s) 21, 112, 181, 444, 717
BspFNI CGCG 1 cut(s) 15
BspHI TCATGA 2 cut(s) 250, 268
BspPI GGATC 2 cut(s) 208, 549
BspT104I TTCGAA 1 cut(s) 130
BsrGI TGTACA 1 cut(s) 530
BsrI ACTGG 4 cut(s) 217, 282, 372, 378
BssECI CCNNGG 1 cut(s) 654
BssMI GATC 5 cut(s) 118, 213, 307, 397, 541
BssT1I CCWWGG 1 cut(s) 654
Bst4CI ACNGT 1 cut(s) 151
BstAUI TGTACA 1 cut(s) 530
BstBI TTCGAA 1 cut(s) 130
BstDEI CTNAG 7 cut(s) 8, 99, 189, 452, 522, 548, 704
BstENI CCTNNNNNAGG 1 cut(s) 653
BstF5I GGATG 1 cut(s) 121
BstFNI CGCG 1 cut(s) 15
BstKTI GATC 5 cut(s) 121, 216, 310, 400, 544
BstMAI GTCTC 2 cut(s) 11, 248
BstMBI GATC 5 cut(s) 118, 213, 307, 397, 541
BstMWI GCNNNNNNNGC 1 cut(s) 490
BstUI CGCG 1 cut(s) 15
BstV1I GCAGC 1 cut(s) 707
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuI GTATCC 1 cut(s) 139
BtrI CACGTC 1 cut(s) 755
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 186, 385
CciI TCATGA 2 cut(s) 250, 268
Csp6I GTAC 1 cut(s) 531
CviAII CATG 5 cut(s) 110, 251, 269, 362, 528
CviQI GTAC 1 cut(s) 531
DdeI CTNAG 7 cut(s) 8, 99, 189, 452, 522, 548, 704
DpnI GATC 5 cut(s) 120, 215, 309, 399, 543
DpnII GATC 5 cut(s) 118, 213, 307, 397, 541
Eco130I CCWWGG 1 cut(s) 654
Eco57I CTGAAG 1 cut(s) 300
EcoNI CCTNNNNNAGG 1 cut(s) 653
EcoT14I CCWWGG 1 cut(s) 654
ErhI CCWWGG 1 cut(s) 654
FaeI CATG 5 cut(s) 113, 254, 272, 365, 531
FaiI YATR 9 cut(s) 51, 111, 252, 270, 296, 298, 363, 529, 710
FaqI GGGAC 2 cut(s) 31, 342
FatI CATG 5 cut(s) 109, 250, 268, 361, 527
FauNDI CATATG 1 cut(s) 296
FbaI TGATCA 1 cut(s) 118
Fnu4HI GCNGC 1 cut(s) 696
FokI GGATG 1 cut(s) 128
Fsp4HI GCNGC 1 cut(s) 696
GluI GCNGC 1 cut(s) 696
GsaI CCCAGC 1 cut(s) 596
Hin1II CATG 5 cut(s) 113, 254, 272, 365, 531
HincII GTYRAC 1 cut(s) 435
HindII GTYRAC 1 cut(s) 435
HinfI GANTC 4 cut(s) 44, 454, 641, 758
HphI GGTGA 2 cut(s) 611, 745
Hpy166II GTNNAC 1 cut(s) 435
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 4 cut(s) 251, 269, 587, 717
Hpy8I GTNNAC 1 cut(s) 435
Hpy99I CGWCG 1 cut(s) 474
HpyAV CCTTC 3 cut(s) 237, 324, 596
HpyCH4III ACNGT 1 cut(s) 151
HpyCH4IV ACGT 4 cut(s) 431, 472, 613, 754
HpyCH4V TGCA 2 cut(s) 157, 712
HpyF10VI GCNNNNNNNGC 1 cut(s) 490
HpyF3I CTNAG 7 cut(s) 8, 99, 189, 452, 522, 548, 704
HpySE526I ACGT 4 cut(s) 431, 472, 613, 754
Hsp92II CATG 5 cut(s) 113, 254, 272, 365, 531
Ksp22I TGATCA 1 cut(s) 118
Kzo9I GATC 5 cut(s) 118, 213, 307, 397, 541
LpnPI CCDG 7 cut(s) 143, 230, 295, 385, 391, 578, 730
Lsp1109I GCAGC 1 cut(s) 707
MaeII ACGT 4 cut(s) 431, 472, 613, 754
MalI GATC 5 cut(s) 120, 215, 309, 399, 543
MboI GATC 5 cut(s) 118, 213, 307, 397, 541
MboII GAAGA 3 cut(s) 222, 499, 536
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 1 cut(s) 100
MluCI AATT 6 cut(s) 69, 91, 206, 259, 634, 742
MlyI GAGTC 2 cut(s) 53, 463
MnlI CCTC 5 cut(s) 19, 68, 106, 532, 594
MseI TTAA 3 cut(s) 239, 263, 555
MslI CAYNNNNRTG 1 cut(s) 114
MvnI CGCG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 490
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 118, 213, 307, 397, 541
NlaIII CATG 5 cut(s) 113, 254, 272, 365, 531
NspV TTCGAA 1 cut(s) 130
PagI TCATGA 2 cut(s) 250, 268
PfeI GAWTC 2 cut(s) 641, 758
PkrI GCNGC 1 cut(s) 697
PleI GAGTC 2 cut(s) 52, 462
PpsI GAGTC 2 cut(s) 52, 462
PspFI CCCAGC 1 cut(s) 592
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 1 cut(s) 532
RsaNI GTAC 1 cut(s) 531
RseI CAYNNNNRTG 1 cut(s) 114
SaqAI TTAA 3 cut(s) 239, 263, 555
SatI GCNGC 1 cut(s) 696
Sau3AI GATC 5 cut(s) 118, 213, 307, 397, 541
SchI GAGTC 2 cut(s) 53, 463
SduI GDGCHC 1 cut(s) 100
SfuI TTCGAA 1 cut(s) 130
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 3 cut(s) 41, 587, 664
SmoI CTYRAG 3 cut(s) 41, 587, 664
Sse9I AATT 6 cut(s) 69, 91, 206, 259, 634, 742
SsiI CCGC 4 cut(s) 15, 38, 493, 750
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 1 cut(s) 151
TaiI ACGT 4 cut(s) 434, 475, 616, 757
TaqI TCGA 2 cut(s) 130, 212
TasI AATT 6 cut(s) 69, 91, 206, 259, 634, 742
TatI WGTACW 1 cut(s) 530
TfiI GAWTC 2 cut(s) 641, 758
Tru1I TTAA 3 cut(s) 239, 263, 555
Tru9I TTAA 3 cut(s) 239, 263, 555
TscAI CASTG 2 cut(s) 193, 385
TseI GCWGC 1 cut(s) 695
TspDTI ATGAA 3 cut(s) 180, 283, 285
TspRI CASTG 2 cut(s) 193, 385
XagI CCTNNNNNAGG 1 cut(s) 653
XapI RAATTY 1 cut(s) 206
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.