Prupe.1G128500_v2.0.a1

Major allergen Pru

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000091
Physical Location & Seq
Forward (+)
10035684 .. 10036913
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G128500.1

Sequence Viewer

Length: 465 bp
ATGACTGAGTTCACCTCTGTCATTGCTCCACCTAGGTTGTTCAAAGCCCTTGTTCTAGATGCTGACAACCTCGTCCCAAAGATTGCTCCACAAGCAGTTAAAAGTGCTGAAATTGTTGAAGGAGATGGAGGTGTTGGAACCATCAAGAAGACTAGCTTTGGTGAAGGAAGTGAATACAGCTATGTGAAGCACCAGGTTGATGCGCTTGACAAAGATAACTTTGTGTACAGCTACAGTTTGATTGAAGGAGATGCTCTTTCAGACAAAATTGAGAAAATCTCTTATGAGATTAAGTTGGTGGCATCTGCAGATGGAGGTTCCATCATAAAAAACACCAGCAACTACCACATCAAGGGAGATGTTGAGATCAAGGAAGAGCATGTTAAAGCTGGCAAAGAAAGGGCCCATGCTTTGTTCAAGGTTATTGAGACCTATCTTGTGGCCAACCCCGATGCCTACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Bet_v_1

Protein Analysis

155

Amino Acids

16.81

Weight (kDa)

5.22

Isoelectric Point (pI)

18.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000091)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g18830 FvH4_4g18850 FvH4_4g18851 FvH4_4g18990 FvH4_4g19000 FvH4_4g19010 FvH4_4g19020 FvH4_4g19040 FvH4_4g19050 FvH4_4g19060 FvH4_4g19080 FvH4_4g19120 FvH4_4g19170 FvH4_4g19700 FvH4_4g19710 FvH4_5g00780
malus_domestica MD13G1160600.v1.1 MD13G1160700.v1.1 MD13G1160900.v1.1 MD13G1161000.v1.1 MD13G1161100.v1.1 MD13G1161200.v1.1 MD13G1161300.v1.1 MD13G1161400.v1.1 MD16G1159900.v1.1 MD16G1160000.v1.1 MD16G1160100.v1.1 MD16G1160300.v1.1 MD16G1160400.v1.1 MD16G1160500.v1.1 MD16G1160700.v1.1 MD16G1161100.v1.1 MD16G1161200.v1.1 MD16G1161400.v1.1 MD16G1161500.v1.1
prunus_persica Prupe.1G126900_v2.0.a1 Prupe.1G126900_v2.0.a1 Prupe.1G127100_v2.0.a1 Prupe.1G127200_v2.0.a1 Prupe.1G127300_v2.0.a1 Prupe.1G127400_v2.0.a1 Prupe.1G127500_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127600_v2.0.a1 Prupe.1G127700_v2.0.a1 Prupe.1G127800_v2.0.a1 Prupe.1G127900_v2.0.a1 Prupe.1G128100_v2.0.a1 Prupe.1G128200_v2.0.a1 Prupe.1G128300_v2.0.a1 Prupe.1G128500_v2.0.a1 Prupe.1G128600_v2.0.a1 Prupe.1G128700_v2.0.a1 Prupe.6G094400_v2.0.a1
pyrus_communis pycom06g07350 pycom08g13110 pycom08g13120 pycom13g13660 pycom13g13680 pycom13g13700 pycom13g13710 pycom13g13730 pycom13g13740 pycom13g13750 pycom13g13760 pycom16g13470 pycom16g13480 pycom16g13540 pycom16g13580 pycom16g13600 pycom16g13650 pycom16g13690
rosa_chinensis RchiOBHm_Chr4g0410071 RchiOBHm_Chr4g0410081 RchiOBHm_Chr4g0410091 RchiOBHm_Chr4g0410251 RchiOBHm_Chr4g0410281 RchiOBHm_Chr4g0410291 RchiOBHm_Chr4g0423641 RchiOBHm_Chr4g0423661 RchiOBHm_Chr4g0423691 RchiOBHm_Chr4g0423701 RchiOBHm_Chr4g0423711 RchiOBHm_Chr4g0423721 RchiOBHm_Chr4g0423881 RchiOBHm_Chr4g0423891 RchiOBHm_Chr4g0423901 RchiOBHm_Chr4g0423911 RchiOBHm_Chr4g0423921 RchiOBHm_Chr4g0423931 RchiOBHm_Chr4g0423941 RchiOBHm_Chr4g0423961 RchiOBHm_Chr4g0423971 RchiOBHm_Chr4g0423991 RchiOBHm_Chr4g0424011 RchiOBHm_Chr4g0424021 RchiOBHm_Chr4g0424031 RchiOBHm_Chr4g0424041 RchiOBHm_Chr4g0424121 RchiOBHm_Chr4g0424131 RchiOBHm_Chr4g0425171 RchiOBHm_Chr4g0425181 RchiOBHm_Chr7g0201401
rosa_laevigata RLG00000003678 RLG00000007393 RLG00000007394 RLG00000007502 RLG00000007503 RLG00000007508 RLG00000007509 RLG00000007510 RLG00000007511 RLG00000007512 RLG00000007514 RLG00000007515 RLG00000007516 RLG00000007517 RLG00000007518 RLG00000007520 RLG00000007521 RLG00000007523 RLG00000007535 RLG00000007536 RLG00000007537 RLG00000007538 RLG00000007539 RLG00000008440 RLG00000008441 RLG00000008491 RLG00000008504
rosa_multiflora Rmu_co8215346.1_g000001 Rmu_sc0000365.1_g000047 Rmu_sc0000365.1_g000054 Rmu_sc0000365.1_g000055 Rmu_sc0000464.1_g000004 Rmu_sc0000464.1_g000005 Rmu_sc0000464.1_g000006 Rmu_sc0000464.1_g000007 Rmu_sc0000464.1_g000009 Rmu_sc0000464.1_g000012 Rmu_sc0000464.1_g000013 Rmu_sc0000464.1_g000015 Rmu_sc0000554.1_g000007 Rmu_sc0001469.1_g000009 Rmu_sc0002111.1_g000036 Rmu_sc0002260.1_g000046 Rmu_sc0002260.1_g000047 Rmu_sc0002260.1_g000064 Rmu_sc0002260.1_g000067 Rmu_sc0002260.1_g000068 Rmu_sc0002260.1_g000069 Rmu_sc0002260.1_g000075 Rmu_sc0002260.1_g000078 Rmu_sc0002260.1_g000079 Rmu_sc0002260.1_g000080 Rmu_sc0002260.1_g000088 Rmu_sc0002260.1_g000090 Rmu_sc0002260.1_g000093 Rmu_sc0002260.1_g000094 Rmu_sc0002260.1_g000096 Rmu_sc0004705.1_g000030 Rmu_sc0006329.1_g000002 Rmu_sc0008373.1_g000005 Rmu_sc0008373.1_g000006 Rmu_sc0008373.1_g000007 Rmu_sc0008373.1_g000009 Rmu_sc0008373.1_g000010 Rmu_sc0013971.1_g000005 Rmu_sc0028704.1_g000001 Rmu_ssc0000420.1_g000042 Rmu_ssc0000420.1_g000043
rosa_roxburghii Rroxscaffold_1G00039420 Rroxscaffold_3G00255320 Rroxscaffold_5G00354650 Rroxscaffold_5G00354670 Rroxscaffold_5G00354680 Rroxscaffold_5G00354770 Rroxscaffold_5G00354780 Rroxscaffold_5G00354840 Rroxscaffold_5G00354850 Rroxscaffold_5G00354880 Rroxscaffold_5G00355060 Rroxscaffold_5G00365850 Rroxscaffold_5G00365860 Rroxscaffold_5G00365880 Rroxscaffold_5G00365980 Rroxscaffold_5G00365990 Rroxscaffold_5G00366000 Rroxscaffold_5G00366010 Rroxscaffold_5G00366030 Rroxscaffold_5G00366040 Rroxscaffold_5G00366110 Rroxscaffold_5G00366120
rosa_rugosa Rorug04G0100900 Rorug04G0100900 Rorug04G0101000 Rorug04G0101000 Rorug04G0101100 Rorug04G0101600 Rorug04G0101700 Rorug04G0101700 Rorug04G0101900 Rorug04G0189300 Rorug04G0189400 Rorug04G0189500 Rorug04G0189500 Rorug04G0189600 Rorug04G0191600 Rorug04G0191800 Rorug04G0191800 Rorug04G0191900 Rorug04G0192000 Rorug04G0192100 Rorug04G0192200 Rorug04G0192300 Rorug04G0192500 Rorug04G0192500 Rorug04G0192600 Rorug04G0192700 Rorug04G0192700 Rorug04G0192700 Rorug04G0193200 Rorug04G0193300 Rorug04G0201800 Rorug04G0201800 Rorug07G0063300.1
rosa_samantha Rh4CG170500 Rh4CG171600 Rh4CG171900 Rh4CG262200 Rh4CG262400 Rh4CG262500 Rh4CG262600 Rh4CG262700 Rh4CG262800 Rh4CG262900 Rh4CG263000 Rh4CG264700 Rh4CG264800 Rh4CG264900 Rh4CG265000 Rh4CG265100 Rh4CG265200 Rh4CG265300 Rh4CG265500 Rh4CG265600 Rh4CG265700 Rh4CG265800 Rh4CG265900 Rh4CG266100 Rh4CG266200 Rh4CG266800 Rh4CG267200 Rh4CG275400 Rh4CG275500 Rh7CG201600
rosa_wichuraiana Rw4G013200 Rw4G013210 Rw4G013220 Rw4G013300 Rw4G021330 Rw4G021340 Rw4G021350 Rw4G021360 Rw4G021370 Rw4G021380 Rw4G021510 Rw4G021530 Rw4G021540 Rw4G021560 Rw4G021570 Rw4G021580 Rw4G021590 Rw4G021600 Rw4G021610 Rw4G021620 Rw4G021630 Rw4G021650 Rw4G021660 Rw4G022390 Rw7G016700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 441
AfaI GTAC 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 352
AgsI TTSAA 4 cut(s) 43, 119, 245, 418
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 4 cut(s) 156, 180, 231, 389
AluI AGCT 4 cut(s) 156, 180, 231, 389
Alw26I GTCTC 1 cut(s) 422
AoxI GGCC 2 cut(s) 402, 441
ApaI GGGCCC 1 cut(s) 406
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 402, 403
AsuHPI GGTGA 2 cut(s) 4, 173
AvrII CCTAGG 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 406
BalI TGGCCA 1 cut(s) 443
BanII GRGCYC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 155
BccI CCATC 4 cut(s) 119, 149, 305, 329
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 422
BfaI CTAG 3 cut(s) 33, 56, 153
BfmI CTRYAG 2 cut(s) 232, 306
BlnI CCTAGG 1 cut(s) 32
Bme1390I CCNGG 1 cut(s) 194
BmgT120I GGNCC 2 cut(s) 402, 403
BmiI GGNNCC 3 cut(s) 139, 319, 404
BmrFI CCNGG 1 cut(s) 194
BmsI GCATC 5 cut(s) 49, 190, 241, 311, 442
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 3 cut(s) 31, 263, 295
BsaI GGTCTC 1 cut(s) 422
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse3DI GCAATG 1 cut(s) 21
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 32
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 1 cut(s) 21
BseSI GKGCMC 1 cut(s) 406
BshFI GGCC 2 cut(s) 404, 443
BslFI GGGAC 1 cut(s) 59
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 422
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 404, 443
Bso31I GGTCTC 1 cut(s) 422
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 366
BspANI GGCC 2 cut(s) 404, 443
BspLI GGNNCC 3 cut(s) 139, 319, 404
BspMAI CTGCAG 1 cut(s) 310
BspQI GCTCTTC 1 cut(s) 369
BspTNI GGTCTC 1 cut(s) 422
BsrDI GCAATG 1 cut(s) 21
BsrGI TGTACA 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 1 cut(s) 366
BssT1I CCWWGG 1 cut(s) 32
Bst2UI CCWGG 1 cut(s) 194
Bst4CI ACNGT 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 369
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 6
BstHHI GCGC 1 cut(s) 205
BstKTI GATC 1 cut(s) 369
BstMAI GTCTC 1 cut(s) 422
BstMBI GATC 1 cut(s) 366
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstNI CCWGG 1 cut(s) 194
BstNSI RCATGY 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 232, 306
BstSLI GKGCMC 1 cut(s) 406
BstV2I GAAGAC 1 cut(s) 155
BsuRI GGCC 2 cut(s) 404, 443
Cac8I GCNNGC 1 cut(s) 391
CfoI GCGC 1 cut(s) 205
Cfr13I GGNCC 2 cut(s) 402, 403
CsiI ACCWGGT 1 cut(s) 192
Csp6I GTAC 1 cut(s) 226
CspCI CAANNNNNGTGG 2 cut(s) 18, 53
CviAII CATG 2 cut(s) 380, 407
CviJI RGCY 7 cut(s) 47, 156, 180, 231, 389, 404, 443
CviKI_1 RGCY 7 cut(s) 47, 156, 180, 231, 389, 404, 443
CviQI GTAC 1 cut(s) 226
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 368
DpnII GATC 1 cut(s) 366
DrdI GACNNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 71
EaeI YGGCCR 1 cut(s) 441
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 422
EcoO109I RGGNCCY 1 cut(s) 402
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 32
EcoT38I GRGCYC 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 32
FaeI CATG 2 cut(s) 383, 410
FaiI YATR 5 cut(s) 183, 285, 326, 381, 408
FalI AAGNNNNNCTT 2 cut(s) 140, 172
FaqI GGGAC 1 cut(s) 59
FatI CATG 2 cut(s) 379, 406
FriOI GRGCYC 1 cut(s) 406
FspBI CTAG 3 cut(s) 33, 56, 153
GlaI GCGC 1 cut(s) 204
HaeIII GGCC 2 cut(s) 404, 443
HhaI GCGC 1 cut(s) 205
Hin1II CATG 2 cut(s) 383, 410
Hin6I GCGC 1 cut(s) 203
HinP1I GCGC 1 cut(s) 203
HphI GGTGA 2 cut(s) 4, 173
Hpy166II GTNNAC 2 cut(s) 12, 226
Hpy188I TCNGA 1 cut(s) 262
Hpy188III TCNNGA 2 cut(s) 56, 145
Hpy8I GTNNAC 2 cut(s) 12, 226
HpyAV CCTTC 3 cut(s) 113, 158, 239
HpyCH4III ACNGT 1 cut(s) 236
HpyCH4V TGCA 1 cut(s) 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 2 cut(s) 383, 410
HspAI GCGC 1 cut(s) 203
Kzo9I GATC 1 cut(s) 366
LguI GCTCTTC 1 cut(s) 369
LmnI GCTCC 2 cut(s) 31, 91
LpnPI CCDG 4 cut(s) 179, 206, 349, 375
LweI GCATC 5 cut(s) 49, 190, 241, 311, 442
MabI ACCWGGT 1 cut(s) 192
MaeI CTAG 3 cut(s) 33, 56, 153
MalI GATC 1 cut(s) 368
MboI GATC 1 cut(s) 366
MboII GAAGA 2 cut(s) 160, 386
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 443
MluCI AATT 2 cut(s) 111, 267
MluNI TGGCCA 1 cut(s) 443
MmeI TCCRAC 1 cut(s) 115
MnlI CCTC 4 cut(s) 25, 80, 122, 308
Mox20I TGGCCA 1 cut(s) 443
MscI TGGCCA 1 cut(s) 443
MseI TTAA 3 cut(s) 99, 291, 384
Msp20I TGGCCA 1 cut(s) 443
MspR9I CCNGG 1 cut(s) 194
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 366
NlaIII CATG 2 cut(s) 383, 410
NlaIV GGNNCC 3 cut(s) 139, 319, 404
NspI RCATGY 1 cut(s) 383
PciSI GCTCTTC 1 cut(s) 369
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 3 cut(s) 139, 319, 404
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 2 cut(s) 402, 403
PstI CTGCAG 1 cut(s) 310
RsaI GTAC 1 cut(s) 227
RsaNI GTAC 1 cut(s) 226
SapI GCTCTTC 1 cut(s) 369
SaqAI TTAA 3 cut(s) 99, 291, 384
Sau3AI GATC 1 cut(s) 366
Sau96I GGNCC 2 cut(s) 402, 403
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 1 cut(s) 406
SexAI ACCWGGT 1 cut(s) 192
SfaNI GCATC 5 cut(s) 49, 190, 241, 311, 442
SfcI CTRYAG 2 cut(s) 232, 306
Sse9I AATT 2 cut(s) 111, 267
SspMI CTAG 3 cut(s) 33, 56, 153
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 32
TaaI ACNGT 1 cut(s) 236
TasI AATT 2 cut(s) 111, 267
TatI WGTACW 1 cut(s) 225
Tru1I TTAA 3 cut(s) 99, 291, 384
Tru9I TTAA 3 cut(s) 99, 291, 384
XbaI TCTAGA 1 cut(s) 55
XceI RCATGY 1 cut(s) 383
XmaJI CCTAGG 1 cut(s) 32
XspI CTAG 3 cut(s) 33, 56, 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.